ISNha3
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007964 | ND | Nitrobacter hamburgensis | Nitrobacter hamburgensis X14 Nitrobacter hamburgensis X14 plasmid 3 |
DNA section
IS Length : 1631 bp
Ends
IR Length : 22/23
IRL : CCCGTCTTATTCGTGAGAGTGCGCCTGAGAGGCTGGCGAGCGTGGTGTAA
IRR : CCCGTCCTATTCGTGAGAGTGCGGTTTTTTGGTTCGATTGATGTGACTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGAGAACTC | CTAG | TGGATCGCGT | 4 |
| CTTGAAGGCG | CTAG | AGGTGGCCCG | 4 |
| ATATCGGTGT | TTAG | AGCATGATCC | 4 |
DNA sequence
CCCGTCTTATTCGTGAGAGTGCGCCTGAGAGGCTGGCGAGCGTGGTGTAAAGCGCTGATGCGGCGTAGGATTCGGTTGCGAAGCCAACCCCATGACCTTC
AATCGCGAACGCCACGCCCGCCATGACCGATGATACGATTCTGCCATTCTCGTTTCCAGCCGTTCACGCCAAGAAAGTCACAGCTGCCTTCGATGGCGGT
CGCTTGACATCGAACGGGGGCGTGATGCTTCTGGCGACGGCCGAGCGACGTCTCGGTTTGGCCGACAAGTTGGCCCGGGTGTTCCCGGACCGGCGCGACC
CGACGCGGGTCGTGCACAGCCTTGTCGATATGTTTCGCGCTCGCATGTTCGCGATCTGCTGCGGCTACGAGGACGCCGACGACCTCGATCATCTGCGGTC
CGATCCGGCATTCAAGCTGGCCTGCGGACGGCTGCCGGACAGCGGTCGCGATCTGTGTTCCCAACCGACGCTGTCGCGCCTGGAGAATGCTCCGCGCCTG
CGCGACGTGATCCGGCTGACCTACACTTTGGTCGACGCATGGATGGATAGCTACCCGCGCGAGCCGGCATCCGTCACGCTCGACATCGATGATACCTGCG
ATGTCGTCCACGGTCATCAGCAGCTCTCGCTGTTCAACGCTCATTATGACGAACGCTGCTTCTTGCCGATCCACGTCTACGACACGGAGAAGAGCCGGCC
CGTGGCGGTCGTGCTGCGGCCGGGCAAGACGCCGGGCGGCGTCGAGGTGCGCGCCCATCTGCGCCGCCTGGTACGGCACATCCGCACGCGATGGCACAAC
ACGCGAATTACGGTCCGTGGCGACGGGCACTATGCCCGGCCGGAGGCGATGACGTGGTGCGAGAACAACGGCATCGACTACATCTTCGGCCTGTCCGGCA
CCAAGCCGCTCGCCAGAAAAGTCGACGAGGTCGCTGACGACATCCGCACCCGACGCGCCATCGAGAACCTGGCTGTTCTGCGCGGCTATACCGAGACGCG
CCACAAGGCCAAGTCCTGGGATCGCGAACGGCGCACCGTCGCCCGTATTGAGGCGACGATGCTCGGCCTCGACATCCGCTTCGTCGTCACCAGCCTCGAT
GCCGGCTCGGCCGAGTGGATCTACGACAGCCTGTATTGCGCGCGCGGCCAGGCCGAGAACCTGATCAAGCTGCATAAGACGCAGCTCGCCTCCGATCGCA
CCAGTTGCCGTTCGGCGCTCGCCAACCAGGTCCGTCTCGTGCTCCATACCGCCGCTTATTGGCTGATGCTGACCGTGCGCGACGCCATTCCCAAAGCCCG
CGAATTGGCCACTGCCGAGTTCGCGACGCTGCGTCTTCGTCTCTTGAAAATCGCAGCCAGGGTCGTCGAGACCGCGAGCCGCATTCGCCTCGCGTTCGCC
GCGGCATGTCCCGAAGCCGACCTCTTCCGCAGCTTGCCGGGCTCGCTGCTGCCACACGGTCCTTGACCGCCGGGGCGTGCGCCCCCTTCGCCCAACCCAT
CCCTCAAACGCGTTGCAAAGTACCGGTCGTCAGGCGGTGAAAAGCCGAAGGCAATCCTATGCGCCTCGTCCGAGGAGATGTGCAGTCACATCAATCGAAC
CAAAAAACCGCACTCTCACGAATAGGACGGG
AATCGCGAACGCCACGCCCGCCATGACCGATGATACGATTCTGCCATTCTCGTTTCCAGCCGTTCACGCCAAGAAAGTCACAGCTGCCTTCGATGGCGGT
CGCTTGACATCGAACGGGGGCGTGATGCTTCTGGCGACGGCCGAGCGACGTCTCGGTTTGGCCGACAAGTTGGCCCGGGTGTTCCCGGACCGGCGCGACC
CGACGCGGGTCGTGCACAGCCTTGTCGATATGTTTCGCGCTCGCATGTTCGCGATCTGCTGCGGCTACGAGGACGCCGACGACCTCGATCATCTGCGGTC
CGATCCGGCATTCAAGCTGGCCTGCGGACGGCTGCCGGACAGCGGTCGCGATCTGTGTTCCCAACCGACGCTGTCGCGCCTGGAGAATGCTCCGCGCCTG
CGCGACGTGATCCGGCTGACCTACACTTTGGTCGACGCATGGATGGATAGCTACCCGCGCGAGCCGGCATCCGTCACGCTCGACATCGATGATACCTGCG
ATGTCGTCCACGGTCATCAGCAGCTCTCGCTGTTCAACGCTCATTATGACGAACGCTGCTTCTTGCCGATCCACGTCTACGACACGGAGAAGAGCCGGCC
CGTGGCGGTCGTGCTGCGGCCGGGCAAGACGCCGGGCGGCGTCGAGGTGCGCGCCCATCTGCGCCGCCTGGTACGGCACATCCGCACGCGATGGCACAAC
ACGCGAATTACGGTCCGTGGCGACGGGCACTATGCCCGGCCGGAGGCGATGACGTGGTGCGAGAACAACGGCATCGACTACATCTTCGGCCTGTCCGGCA
CCAAGCCGCTCGCCAGAAAAGTCGACGAGGTCGCTGACGACATCCGCACCCGACGCGCCATCGAGAACCTGGCTGTTCTGCGCGGCTATACCGAGACGCG
CCACAAGGCCAAGTCCTGGGATCGCGAACGGCGCACCGTCGCCCGTATTGAGGCGACGATGCTCGGCCTCGACATCCGCTTCGTCGTCACCAGCCTCGAT
GCCGGCTCGGCCGAGTGGATCTACGACAGCCTGTATTGCGCGCGCGGCCAGGCCGAGAACCTGATCAAGCTGCATAAGACGCAGCTCGCCTCCGATCGCA
CCAGTTGCCGTTCGGCGCTCGCCAACCAGGTCCGTCTCGTGCTCCATACCGCCGCTTATTGGCTGATGCTGACCGTGCGCGACGCCATTCCCAAAGCCCG
CGAATTGGCCACTGCCGAGTTCGCGACGCTGCGTCTTCGTCTCTTGAAAATCGCAGCCAGGGTCGTCGAGACCGCGAGCCGCATTCGCCTCGCGTTCGCC
GCGGCATGTCCCGAAGCCGACCTCTTCCGCAGCTTGCCGGGCTCGCTGCTGCCACACGGTCCTTGACCGCCGGGGCGTGCGCCCCCTTCGCCCAACCCAT
CCCTCAAACGCGTTGCAAAGTACCGGTCGTCAGGCGGTGAAAAGCCGAAGGCAATCCTATGCGCCTCGTCCGAGGAGATGTGCAGTCACATCAATCGAAC
CAAAAAACCGCACTCTCACGAATAGGACGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1344 bp | 447 aa | 123 | 1466 | + | No |
Chemistry : DDE
ORF sequence :
MTDDTILPFSFPAVHAKKVTAAFDGGRLTSNGGVMLLATAERRLGLADKLARVFPDRRDPTRVVHSLVDMFRARMFAICCGYEDADDLDHLRSDPAFKLA
CGRLPDSGRDLCSQPTLSRLENAPRLRDVIRLTYTLVDAWMDSYPREPASVTLDIDDTCDVVHGHQQLSLFNAHYDERCFLPIHVYDTEKSRPVAVVLRP
GKTPGGVEVRAHLRRLVRHIRTRWHNTRITVRGDGHYARPEAMTWCENNGIDYIFGLSGTKPLARKVDEVADDIRTRRAIENLAVLRGYTETRHKAKSWD
RERRTVARIEATMLGLDIRFVVTSLDAGSAEWIYDSLYCARGQAENLIKLHKTQLASDRTSCRSALANQVRLVLHTAAYWLMLTVRDAIPKARELATAEF
ATLRLRLLKIAARVVETASRIRLAFAAACPEADLFRSLPGSLLPHGP
CGRLPDSGRDLCSQPTLSRLENAPRLRDVIRLTYTLVDAWMDSYPREPASVTLDIDDTCDVVHGHQQLSLFNAHYDERCFLPIHVYDTEKSRPVAVVLRP
GKTPGGVEVRAHLRRLVRHIRTRWHNTRITVRGDGHYARPEAMTWCENNGIDYIFGLSGTKPLARKVDEVADDIRTRRAIENLAVLRGYTETRHKAKSWD
RERRTVARIEATMLGLDIRFVVTSLDAGSAEWIYDSLYCARGQAENLIKLHKTQLASDRTSCRSALANQVRLVLHTAAYWLMLTVRDAIPKARELATAEF
ATLRLRLLKIAARVVETASRIRLAFAAACPEADLFRSLPGSLLPHGP
Blast result :
Comments
ISNha3 is 81% aa similar to ISMesp2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L., Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L., Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P. (2006) Direct submission GenBank.