ISCph7
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010831 | ND | Chlorobium phaeobacteroides | Chlorobium phaeobacteroides BS1 |
DNA section
IS Length : 1778 bp
Ends
IR Length : 13
IRL : CCTGAATAATTCACATGGGTAATAAAAAAGGGATGCATAATCGCCACAAA
IRR : CCTGAATAATTCATGAGACTGCAAAAGAGAGGCCTCTCGAGCCAAAAGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTCTTGGTA | GTAA | ATGTAAAAAG | 4 |
| TTTTTTGCTG | CTAT | ATGCTGAGAT | 4 |
| CACTCAGAAC | TTAG | ATCAATAAAA | 4 |
| ATAGCGAAAT | GTAA | ATCAGGAAAA | 4 |
| GACAAGCCGC | CTAA | AGGTCTTTTG | 4 |
| AGATACTAC | ATAA | GAGGATATAA | 4 |
| GATTAGCGAT | ATGA | ATCGATTTTA | 4 |
| AACCGGGAGT | CTAT | ATTGTTGAAG | 4 |
| GTAGTTGTAT | TTAG | AAGTTGCTTC | 4 |
| AGCTTCTTAT | GTAGATTATG | 0 |
DNA sequence
CCTGAATAATTCACATGGGTAATAAAAAAGGGATGCATAATCGCCACAAAGTGTTATTTTATTGATGCTTAGACAACAAATAATTACTTGACAACCATGC
AACTCCCTTTCGCTAATATACACACTGAACAGCCCACCCAACAAGCGCTATTTCCTGATTGTTTCGAAGTATCCGTTGCCCCGGTCAAGGGCAAAAAAGT
GGTTCTTGATTTCCAGGGCGGCAACACCACCAGCGATGCCGGTGTCCTGCTGTTGAAGGAAGTCGAGTCCATGACCAGGATCGTTCCGAAGCTTGCCGAT
TGCATTGCCGATTCGCGTCGGACCTCGTCTGTCATGCATGTGATCCATGACCTGATCGCCCAGCGGGTCTACCAGATCGCCTGCGGCTATGAGGACGGCA
ACGACAGCAATTCCCTGCGGAAGGATCCCGCTCTCAAGATGGCCCTCAACCGTCTTCCTGAAAGCGGCGATGACCTTGCCAGCCAGCCGACCTTCAGCAG
ACTCGAAAACATGGTTACCCGTCCGGAGCTCTATCGTATGGCTGTCGGGTTCCTCGATCATTTCCTTGACTCCTACACCGAGGCGCCGCGGGTCATCGTC
CTGGACTTTGACGATACCGAGGATGTCGTTCACGGCAAACAGCAGCTGGCGCTTTTCAACGGCTATCACCAGGAGACCTGCTACCAGCCTCTCCATGTTT
TCGAGGGGTTGACTGGCAAGCTGATCGCCTCGATCCTTCGCCCTGGCAGGCGTCCTACCGGCAAGGAGATTGTGTCATACGTGAAGCGTATTATCCGCCA
TATCCGGAGCCGGTGGCCGGAAACGATCATCGTCTACCGCGGCGACAGCCATTACGGCGTGCCAGAAGTCTACTCCTTCCTTGCTTCAAAGCGGAACTGC
TACAGCGTGACCGGCCTCGGCGGTAATGACGTGCTGCTCCGCTCCGTCAAGGACATTATTGAGGAGGTCAAGAAGCATGGAGCCGGATACCGCCGTTACC
ATACCTTCCAGTATCAGGCACGGAGCTGGAATGGGAGCCGCAGAGTGGTCGCCAAGGTCGAGATGACCGAAAAGGGGTTGAACGTGCGCTTCATCAGCAC
CGACATACAGGAGGCAAAGGCCAAGACTCTGTACGAGCAAATTTACAGCGCTCGTGGCAACGATGAACTCTACATCAAGGCGCATAAAACGTTCATGAAG
AGCGACCGGACCTCGTGCCATCGCTTTCTTGCCAACCAGTTCAGGGTCTTCCTGCATTCGGCGGCCTATGTCCTGGTCCACGCCTTCCAGACCAACCTGC
TCCGGGGCACCGCCCTTGCCACGGCGACTTTCGAAACGATCCGCTTGAAGCTGCTGAAAATCGGGGCGAAAGTCATCGAGATGAAGACACGCATCAAGGT
GCATCTGCCGACCTCATATCCGTACAAACCGATACTGAACAAGTGCCTCACCATCCTTGAGCACCTGCGATCAGTCCCATGGCCATCAACAGCAATTCCG
TAATGCTGTAACGTTTCCAGAAGGGGGAGGTGACAAGCAAACAGAGCTACAGGAAGGGCGTAAATGTCGTGACGTCAAGGGATGACTATGGCCTCATGGT
ATCTGAGACCAGTTTCTTACAGGGATAAGTCGCTTTTCCGGCATCAGTAAATTCCCGATAAGGGGTGAACGTATGACGCGAAGACACGGCAGGTCGGGAT
CTCAGGTTGGCTTCGCCTTTGGCAGACCCACTTTTGGCTCGAGAGGCCTCTCTTTTGCAGTCTCATGAATTATTCAGG
AACTCCCTTTCGCTAATATACACACTGAACAGCCCACCCAACAAGCGCTATTTCCTGATTGTTTCGAAGTATCCGTTGCCCCGGTCAAGGGCAAAAAAGT
GGTTCTTGATTTCCAGGGCGGCAACACCACCAGCGATGCCGGTGTCCTGCTGTTGAAGGAAGTCGAGTCCATGACCAGGATCGTTCCGAAGCTTGCCGAT
TGCATTGCCGATTCGCGTCGGACCTCGTCTGTCATGCATGTGATCCATGACCTGATCGCCCAGCGGGTCTACCAGATCGCCTGCGGCTATGAGGACGGCA
ACGACAGCAATTCCCTGCGGAAGGATCCCGCTCTCAAGATGGCCCTCAACCGTCTTCCTGAAAGCGGCGATGACCTTGCCAGCCAGCCGACCTTCAGCAG
ACTCGAAAACATGGTTACCCGTCCGGAGCTCTATCGTATGGCTGTCGGGTTCCTCGATCATTTCCTTGACTCCTACACCGAGGCGCCGCGGGTCATCGTC
CTGGACTTTGACGATACCGAGGATGTCGTTCACGGCAAACAGCAGCTGGCGCTTTTCAACGGCTATCACCAGGAGACCTGCTACCAGCCTCTCCATGTTT
TCGAGGGGTTGACTGGCAAGCTGATCGCCTCGATCCTTCGCCCTGGCAGGCGTCCTACCGGCAAGGAGATTGTGTCATACGTGAAGCGTATTATCCGCCA
TATCCGGAGCCGGTGGCCGGAAACGATCATCGTCTACCGCGGCGACAGCCATTACGGCGTGCCAGAAGTCTACTCCTTCCTTGCTTCAAAGCGGAACTGC
TACAGCGTGACCGGCCTCGGCGGTAATGACGTGCTGCTCCGCTCCGTCAAGGACATTATTGAGGAGGTCAAGAAGCATGGAGCCGGATACCGCCGTTACC
ATACCTTCCAGTATCAGGCACGGAGCTGGAATGGGAGCCGCAGAGTGGTCGCCAAGGTCGAGATGACCGAAAAGGGGTTGAACGTGCGCTTCATCAGCAC
CGACATACAGGAGGCAAAGGCCAAGACTCTGTACGAGCAAATTTACAGCGCTCGTGGCAACGATGAACTCTACATCAAGGCGCATAAAACGTTCATGAAG
AGCGACCGGACCTCGTGCCATCGCTTTCTTGCCAACCAGTTCAGGGTCTTCCTGCATTCGGCGGCCTATGTCCTGGTCCACGCCTTCCAGACCAACCTGC
TCCGGGGCACCGCCCTTGCCACGGCGACTTTCGAAACGATCCGCTTGAAGCTGCTGAAAATCGGGGCGAAAGTCATCGAGATGAAGACACGCATCAAGGT
GCATCTGCCGACCTCATATCCGTACAAACCGATACTGAACAAGTGCCTCACCATCCTTGAGCACCTGCGATCAGTCCCATGGCCATCAACAGCAATTCCG
TAATGCTGTAACGTTTCCAGAAGGGGGAGGTGACAAGCAAACAGAGCTACAGGAAGGGCGTAAATGTCGTGACGTCAAGGGATGACTATGGCCTCATGGT
ATCTGAGACCAGTTTCTTACAGGGATAAGTCGCTTTTCCGGCATCAGTAAATTCCCGATAAGGGGTGAACGTATGACGCGAAGACACGGCAGGTCGGGAT
CTCAGGTTGGCTTCGCCTTTGGCAGACCCACTTTTGGCTCGAGAGGCCTCTCTTTTGCAGTCTCATGAATTATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1407 bp | 468 aa | 97 | 1503 | + | No |
Chemistry : DDE
ORF sequence :
MQLPFANIHTEQPTQQALFPDCFEVSVAPVKGKKVVLDFQGGNTTSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHVIHDLIAQRVYQIACGYED
GNDSNSLRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLH
VFEGLTGKLIASILRPGRRPTGKEIVSYVKRIIRHIRSRWPETIIVYRGDSHYGVPEVYSFLASKRNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRR
YHTFQYQARSWNGSRRVVAKVEMTEKGLNVRFISTDIQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTN
LLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCLTILEHLRSVPWPSTAIP
GNDSNSLRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLH
VFEGLTGKLIASILRPGRRPTGKEIVSYVKRIIRHIRSRWPETIIVYRGDSHYGVPEVYSFLASKRNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRR
YHTFQYQARSWNGSRRVVAKVEMTEKGLNVRFISTDIQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTN
LLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCLTILEHLRSVPWPSTAIP
Blast result :
Comments
ISCph7 is 97% aa similar to ISCph6.
References
1] ISfinder annotation ( 2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. ( 2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Li,T., Liu,Z., Zhao,F., Overmann,J., Bryant,D.A. and Richardson,P. ( 2008) Direct submission GenBank.