ISAar16

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1396 bp

Ends


Left end : TGTGAGTCTTGTAGTGGCTGGTCTGGGATCAGCTGGCAGGGTAGATGCCAGGCTTCCCTCCGACGTGGGCATGACTCAAAGTAAGGCTGACCCCTGAGGT
Right end : ATCCGTAGATGCATCAAGCGGTTTTTGGCACGCCGAATATACAAGATTCTGGAATCTGCGGAAGTGCTACCGCTGACGGCTTGACAGATATAGAAGAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAGTAAGGCTCGCAGTCCC0
GAAGTAAGGCTCGCAGTCCC0
GAAGTAAGGCTCGCAGTCCC0

DNA sequence

TGTGAGTCTTGTAGTGGCTGGTCTGGGATCAGCTGGCAGGGTAGATGCCAGGCTTCCCTCCGACGTGGGCATGACTCAAAGTAAGGCTGACCCCTGAGGT
GTCGTTTGCGAGAATTGTCTGTCTACGTTGTTGGGCGGCCGGCGCCAACCCGGCCCACCTCGGTAGCCTGATCAGAAGAATGTCCACCTATCAGGGTGTG
ACCCATCACAGTGTTGCTCCAACGGTGACTTCCTTCCCGGACTGGTACCGGCCGCACGGCCGAAGATCCTGTCCGTGAAAAGAAGAAAGTACCAAGCCGT
ATGACTATCCTCCCGCAGACCGTTGCCAAGACCTACTCCTATATCATCGGAGTGGATACCCACGCCCGTAAGCATGTCTATTCCATCATCACCTATACCG
GCGAACACGTGGAAACCAGGGATTTTCCCGCCACCAGTTCCAGCATCAAACGCGCTATCGCTTGGGTCGGCAGGCGCACCGGAGCCGATGCCAGCACCCT
GTGGATAATTGAAGGGACAGCCTCCTACGGTGCCGTAGTCACCGGTGCGGTCACCGATGCCGGCTACACGGTCGCCGAAGCACCTAGCGGCTACCAGAAA
GCCGGGCGCGGCGTGGGTAAGACTGATCCGTTGGATGCCCAGCGCATGGCTGCCGCCGCGCTACCCATCGAGGTGCAGAAGCTGCGTGTTCCGCGACTCA
ATGACGGTGCCCGCGCTGCTTTGCGCGTGCTGGTGACGGCCCGTGACATGCTGGCTGTGGAGCGTACGAAATACGTCAACGCGCTCACCGCACTGCTGCG
TGTGACCTCGCTTGGCATCGATGCCCGCAAACCCTTGAGCAGCACTCAGTTCCTCGAGGTAGCGGGGTGGCGGAGCCGGGAGGAAACCATCGAATCGCAG
GTTGCCCGTGCCGAAGCCGTGCGGTTGGCCCGACGCGTCGGTGAACTGGACACGCATATCAAGGAAAACACGACTCAGATGACTGAGCTGGTCAAGCTCA
GCGAAGGCAAGGAACTACTTGAGCTCACCGGTATCGGTCCGGTGGTGGCGGCGGTCTGCGTGGCCGCGTGGTCCCATCAGGGCAGGTTGCGTTCGGAGGC
TGCATTCGCTTCTCTTGCGGGCGTGAATCCCATCCCTGCATCTTCAGGGAACACGGTGCGCCACCGGCTCAATCGTCGAGGTGACCGGCGGTTGAACAAG
GCCCTGCATACCGCTGCGATGGTACGGATGACCCATGACGAGGAGACCCGGGCCTACGTGGTCAAACGCACGGCGGAAGGCAAGACGTTGAAAGAGATCC
GTAGATGCATCAAGCGGTTTTTGGCACGCCGAATATACAAGATTCTGGAATCTGCGGAAGTGCTACCGCTGACGGCTTGACAGATATAGAAGAGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1080 bp359 aa3011380+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTILPQTVAKTYSYIIGVDTHARKHVYSIITYTGEHVETRDFPATSSSIKRAIAWVGRRTGADASTLWIIEGTASYGAVVTGAVTDAGYTVAEAPSGYQK
AGRGVGKTDPLDAQRMAAAALPIEVQKLRVPRLNDGARAALRVLVTARDMLAVERTKYVNALTALLRVTSLGIDARKPLSSTQFLEVAGWRSREETIESQ
VARAEAVRLARRVGELDTHIKENTTQMTELVKLSEGKELLELTGIGPVVAAVCVAAWSHQGRLRSEAAFASLAGVNPIPASSGNTVRHRLNRRGDRRLNK
ALHTAAMVRMTHDEETRAYVVKRTAEGKTLKEIRRCIKRFLARRIYKILESAEVLPLTA

 

Blast result :
Comments
ISAar16 is 50% aa similar to ISLxx2.
There are 3 copies of ISAar16.
References
1] ISfinder annotation (2009).