IS1Sa
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB001339 | ND | Synechocystis sp. | Synechocystis sp. PCC6803 |
DNA section
IS Length : 802 bp
Ends
IR Length : 16/22
IRL : GAGAATTTCAAATAGATAATGACGTAGGATGATAGGGAATATTGGGTAAT
IRR : GAGAGTCTCAAGAAAGTAATGAAAGGCGCCAGTTGCGTAATAGTTCTATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGAATTTCAAATAGATAATGACGTAGGATGATAGGGAATATTGGGTAATGAGCTTTTGCAAAGATGTCTACACACTGTCACTGTCCTCAATGTGGTCAT
GGGAATGTCGTCAAAAATGGCTTTGTCAAGGGGAAGCAACGATTCAAATGTAAGAGGTGCCAATATAAATTTACCAATCTCTCCAAGGAACGGGGTAAAC
TTCTCTGGATGAAACTAGAAGCGGTCTTATTGTACATGGGTGGTATGTCAATGAATGCCACAGCAAAACTCTTGGGAGTTTCCACTCAGTCACTGCTCAA
CTGGATTAGGGATTTTGGCGAAGCAAACTACGAGAAACCGGCTCCAGACTCAGCGATCGTAGTGGAATTAGACGAACTGTGGCATTTTCTTCAGGCCAAA
AAAACAAGTTATGGCTCTGGAAGGCATATGACCGTGTTACTGGGAGACTCATCGACTGGGAACTGGGAAATCGTGATAGTCAAACCCTGAGTCGTTTGCT
GGAGAGACTGGCAAAGTGGAAAGTGACAGTGTCCTGTACCGATGACTGGAGGCCCTATCAACAACTGCTGGATGAACATCCTGATGCGTTTCATGGGATT
AGCAAAAGAGAAACAGTAGGAATTGAGAGAAACAACTCAGATAATCGCCATTGGCTTGCTAGATTTCATCGCCCCACGAAAGTTATCTCCAGGTCAGCCC
ACATGGTTAATATCACCATGGCAATATTTGCCAAATTCAGGGTCAATGGTAACATAGAACTATTACGCAACTGGCGCCTTTCATTACTTTCTTGAGACTC
TC
GGGAATGTCGTCAAAAATGGCTTTGTCAAGGGGAAGCAACGATTCAAATGTAAGAGGTGCCAATATAAATTTACCAATCTCTCCAAGGAACGGGGTAAAC
TTCTCTGGATGAAACTAGAAGCGGTCTTATTGTACATGGGTGGTATGTCAATGAATGCCACAGCAAAACTCTTGGGAGTTTCCACTCAGTCACTGCTCAA
CTGGATTAGGGATTTTGGCGAAGCAAACTACGAGAAACCGGCTCCAGACTCAGCGATCGTAGTGGAATTAGACGAACTGTGGCATTTTCTTCAGGCCAAA
AAAACAAGTTATGGCTCTGGAAGGCATATGACCGTGTTACTGGGAGACTCATCGACTGGGAACTGGGAAATCGTGATAGTCAAACCCTGAGTCGTTTGCT
GGAGAGACTGGCAAAGTGGAAAGTGACAGTGTCCTGTACCGATGACTGGAGGCCCTATCAACAACTGCTGGATGAACATCCTGATGCGTTTCATGGGATT
AGCAAAAGAGAAACAGTAGGAATTGAGAGAAACAACTCAGATAATCGCCATTGGCTTGCTAGATTTCATCGCCCCACGAAAGTTATCTCCAGGTCAGCCC
ACATGGTTAATATCACCATGGCAATATTTGCCAAATTCAGGGTCAATGGTAACATAGAACTATTACGCAACTGGCGCCTTTCATTACTTTCTTGAGACTC
TC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
426 bp | 141 aa | 65 | 490 | + | No |
Description : First part of the transposase
ORF sequence :
MSTHCHCPQCGHGNVVKNGFVKGKQRFKCKRCQYKFTNLSKERGKLLWMKLEAVLLYMGGMSMNATAKLLGVSTQSLLNWIRDFGEANYEKPAPDSAIVV
ELDELWHFLQAKKTSYGSGRHMTVLLGDSSTGNWEIVIVKPDA
ELDELWHFLQAKKTSYGSGRHMTVLLGDSSTGNWEIVIVKPDA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
486 bp | 161 aa | 310 | 795 | + | No |
Description : Second part of the transposase
ORF sequence :
GFWRSKLRETGSRLSDRSGIRRTVAFSSGQKNKLWLWKAYDRVTGRLIDWELGNRDSQTLSRLLERLAKWKVTVSCTDDWRPYQQLLDEHPDAFHGISKR
ETVGIERNNSDNRHWLARFHRPTKVISRSAHMVNITMAIFAKFRVNGNIELLRNWRLSLLS
ETVGIERNNSDNRHWLARFHRPTKVISRSAHMVNITMAIFAKFRVNGNIELLRNWRLSLLS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
731 bp | 243 aa | 65 | 795 | + | Yes |
Chemistry : DDE
ORF sequence :
MSTHCHCPQCGHGNVVKNGFVKGKQRFKCKRCQYKFTNLSKERGKLLWMKLEAVLLYMGGMSMNATAKLLGVSTQSLLNWIRDFGEANYEKPAPDSAIVV
ELDELWHFLQAKKNKLWLWKAYDRVTGRLIDWELGNRDSQTLSRLLERLAKWKVTVYCTDDWRPYQQLLDEHPDAFHGISKRETVGIESKNSDNRHWFAR
FHRPTKVVFRSPYMVDITMAIFAEFRVNGNIELLRNWRLSLLS
ELDELWHFLQAKKNKLWLWKAYDRVTGRLIDWELGNRDSQTLSRLLERLAKWKVTVYCTDDWRPYQQLLDEHPDAFHGISKRETVGIESKNSDNRHWFAR
FHRPTKVVFRSPYMVDITMAIFAEFRVNGNIELLRNWRLSLLS
Blast result :
Comments
See Synechocystis sp. Genome (cf. genome section in ISDatabase).
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
IS1Sa is 57% aa similar to ISCaa1.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
IS1Sa is 57% aa similar to ISCaa1.
References
1] Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto,S., Kimura,T., Hosouchi,T., Matsuno,A., Muraki,A., Nakazaki,N., Naruo,K., Okumura,S., Shimpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S.(1996) DNA Res. 3 (3), 109-136