ISfinder Mirror Site

ISPosp7

Family IS1380
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_007950	ND	Polaromonas sp.	Polaromonas sp. JS666 plasmid 2

DNA section

IS Length : 1612 bp

Ends

IR Length : 12/14

IRL : CCTGAATATTTCACCTATATGAGTCGGCAGTCCCGCCCGAAGGCGCGTTG
IRR : CCGCATATTTCACGCTTTTTCCTCTCATAGCCTGGTATCGAGGTTTTTCA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
ATTCGAGGGA	GCTAG	GGGTTTTGG	5

DNA sequence

CCTGAATATTTCACCTATATGAGTCGGCAGTCCCGCCCGAAGGCGCGTTGTCATTGGTATCTGACGCCAACCACAACATGGGACTGCCAATGCCAAACTG
TACCGAAGAAATCGGAACGAGCAAGATTGAATTTGGCCAGCTCGGTCGCCGAGTGGTGGAGGGTCGATTTGACGGCGGCAGCATGACCTCTGATGGCGGG
GTGATGCTGCTGGGGGCCACCGACCGCAAGCTGGGCCTGATGGAGGCGGCGGCGCGTTGCATCGCCGATCCGCGCAGCCCGTTGCTGATCAAACACGGCG
TGGCCGACATGCTGCGCCAGCGCGTGTATGGGCTGGCACTGGGCTGGGAAGATTTGAACGACCACGGCGCGCTGCGGGACGACGTGGCGATGCAAACGGC
CGTCGGCGTCGACCGCGAAGTCGCCAGCGCCCCGACGCTGTGCCGGCTGGAGAAGTGGGCGGATCGGGCCACCGCCTGGCGGCTACACCAGGTGCTGGTC
GAGCAATTCATCGCCAGCTTCAAGACTGCTCCCGAGGAACTGGTGCTGGACTTCGACGCCACCGACAATCCGCTGTACGGCCAGCAGGAAGGCCGCTTCT
TCCATGGCTACTACGACTGCTACTGCTATTTGCCGCTGTACGTGTTCTGCGGCCAGCAGCTGCTGTGCGCCTACCTGCGGCCCAGTCGCATCGATGGGGC
CAAACACGCTGGCGCCATCTTCAAGCTGCTGGTCACGCGGCTGCGCCAGCAGTGGCCCCAGGTGCGTATCGTCTTTCGAGGCGACTCGGGCTTTTGCAGG
CAACGCATCATCAACTACTGCGAGCGGGCCGGGGTGCACTACATCGTTGGCCTGGCGCGCAATGCGCGGCTTGAGCAGATCACCGAATTTCTCGAACTGT
CCATGAAGGATGACTACCAGAGCAGCGGAGTCAAGCAACGCGAGGTGGGCGAGTTCATGTATGCCGCGCAGAGCTGGGCGCGCGAGCGCCGGGTGATCAC
GCGGCTGGAGTGCGGCGCACAGGGCACCAACCCGCGCTACGTGGTGACCAATCTCTCGGGCGGCGCCCAGGAGCTGTACGACGATCTGTACTGCCAGCGC
GGCGAGGCCGAGAACCGGATCAAGGAGGCACAGGTTGGGCTGTTTGCCACGCGCACGAGCTGCCAGCACTTGCAGGGCAATCAGCTGCGGGTGTTGCTGG
CGGCGTTGGGCTACGTGCTGATCGAGCGGCTGCGCGCGCTGGCCCTGGCCGACACGGCCCTGGCCTGTGCCCAGGTCGATACGCTGCGTATCAAGCTGCT
CAAGGTGGCCGCGGTGGTCACACGCAACACCCGGCGTATCCGCCTGTACCTGGCCTCCAACTGGCCCAGCGCCGACATCTTCGCGCATGCCATGCGCCAG
CTTCGCTCTCCGTAGCGTTCAGCCCAGTGCCTGGCCGGCGCGTTGACACAAAACGGCCCGCAACCCACGCCGGGGTGGGGGCAGGTGCGCCTTGGCGCCG
CGCAAAGCAACCAACAAATGCTTGTCCGGACCTCTTCGACCTCTGCGATGACCTCATCGCACTGAAAAACCTCGATACCAGGCTATGAGAGGAAAAAGCG
TGAAATATGCGG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1326 bp	441 aa	90	1415	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPNCTEEIGTSKIEFGQLGRRVVEGRFDGGSMTSDGGVMLLGATDRKLGLMEAAARCIADPRSPLLIKHGVADMLRQRVYGLALGWEDLNDHGALRDDVA
MQTAVGVDREVASAPTLCRLEKWADRATAWRLHQVLVEQFIASFKTAPEELVLDFDATDNPLYGQQEGRFFHGYYDCYCYLPLYVFCGQQLLCAYLRPSR
IDGAKHAGAIFKLLVTRLRQQWPQVRIVFRGDSGFCRQRIINYCERAGVHYIVGLARNARLEQITEFLELSMKDDYQSSGVKQREVGEFMYAAQSWARER
RVITRLECGAQGTNPRYVVTNLSGGAQELYDDLYCQRGEAENRIKEAQVGLFATRTSCQHLQGNQLRVLLAALGYVLIERLRALALADTALACAQVDTLR
IKLLKVAAVVTRNTRRIRLYLASNWPSADIFAHAMRQLRSP

Blast result :

Comments

ISPosp7 is 66% aa similar to ISThsp13.

References

1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I. and Richardson,P. (2006) Direct submission GenBank.