ISAar13

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1416 bp

Ends


IR Length : 22/24

IRL : GGCTCTTCAAGTTTTAGCGTGGTGAGCCCGAAAAATAAGTAAGGCCCGCA
IRR : GGCTCTTCGAGTTTAAGCGTGGTGCAGGATGCTCAGCACGGCCGTAGCCC

Insertion site


Left flankDirect repeatRight flankDR Length
TTAGCCCACAGTTAAAGCAGTTTGCTGG8
ATGATTCCATGTCATAGGCCAGTCGGGA8
CCGGGAGGCGATATTATTTCGATGAATA8
AGAAATATTGCTCAAAAGTTGTTGGATT8
TTTTAACGGTGATAAACCGCCAATTGAA8
ACGAATCTCTATCAAAGGACCTAGTTCG8
TGATCAAAGCACTATATTGA0

DNA sequence

GGCTCTTCAAGTTTTAGCGTGGTGAGCCCGAAAAATAAGTAAGGCCCGCAGTCCTCTGCGAAAATGGATGTTGTCTAGACAAACCATCAGCAAGGAACTA
CGAGCCGTGTTTAAGGATACCGGTGGAAACGACGCTGCGTCGATTCTTCTCAACCTCACTGACTACCGCGTCATCGACGCAACCCAAGAACCAGCCGGAC
GACAAGTCCTTATCGAGCCCAAAGCCACAGAGGCAGCCTGTCCAACTTGTGGGGTGATCACCACCCGCATCCACGCCAGACCAGTGCACCGGGTCAAAGA
CCTCCCAACCGGTGGCAACGACATTAAGGTCCTGGTGCGCAAACGCCGGATGGCCTGCCAAGAGACCGCCTGCGAACGCCGCTCGTTCGTGCAAACCACC
GAACAGCTACCGTTGAGGGCCAGAATCACTACCAGGCTCTCTCAAAAGCTCGTGGACGAGATGAGCTGCGAACTGCGAGCCGTGTCCAGGGTCGCTTCTG
CGTACCAAGTTTCCTGGCCAACCGTGATGGCAAGAGCGAACATGGTCGGTGAGCTTGTAGGCAACGTGGACCGCATGTTCATCCGCCGCCTCGGTATTGA
TGAGCACCGTTTTCGTAAGGTCCGCTACGCACGCGGCCGCACCGGGAAAGTGGTCCGTATTGAGCCGTGGTCTATTGTCTTCACCGACCTGGATACCGGA
AAAATTCTAGATATTGTGGACGGACGACGCTGTGCAGCGGTGAAGAAGTGGTTGAAGTCCCGGCCACGGTACTGGCGTCAACGAGTACAGTACGTGGCCA
TTGACATGTCTGCTGAGTTCCGCAAAGCGGTGCGGGAGAACCTGCCGAAAGCAAAGATCAGCGTGGACCATTTTCATGTCATTCAGCGGGCGAATCTCAT
GATTACTCAGGTGCGCCGGCGTCGCTCCCACGAGGTGCTCCAGCGCCGAGGAAGGGCCGCTGATCCGGCCTACAAGTATCGGAAACTGTTGACCTGCAAT
TTGGAGAACTTGTCGATTAGGCAAGTTGAGCGGCTGAAGTTGATCCTTGAAGCAGATCCTGAGCTGGGCGTGATTTATGGGATTAAGGAACACGTGCGGG
AGCTGTTGAAAACCAGGGATATCCATGATTTTCAATCGAGGTGGGCGGTGCTGGAGAAATCGGTGAAGACAACGAAAATGGTGGAAGCGAAGTCGTTGTT
CCGGACGCTGACTGCGTGGAGGCGCGAGTTGCTGGTGTTCATTCGTACGCGGTTGACGAATGCTCGGAGCGAGGCGGCGAACCTGACGGCGAAGAACTTG
AAACGGATCGGTCGGGGTTATCGGAATCATGGTCATTACCGGGTCAGGATATTGTTATACACGGCGGGGCTACGGCCGTGCTGAGCATCCTGCACCACGC
TTAAACTCGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp425 aa1071384+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VFKDTGGNDAASILLNLTDYRVIDATQEPAGRQVLIEPKATEAACPTCGVITTRIHARPVHRVKDLPTGGNDIKVLVRKRRMACQETACERRSFVQTTEQ
LPLRARITTRLSQKLVDEMSCELRAVSRVASAYQVSWPTVMARANMVGELVGNVDRMFIRRLGIDEHRFRKVRYARGRTGKVVRIEPWSIVFTDLDTGKI
LDIVDGRRCAAVKKWLKSRPRYWRQRVQYVAIDMSAEFRKAVRENLPKAKISVDHFHVIQRANLMITQVRRRRSHEVLQRRGRAADPAYKYRKLLTCNLE
NLSIRQVERLKLILEADPELGVIYGIKEHVRELLKTRDIHDFQSRWAVLEKSVKTTKMVEAKSLFRTLTAWRRELLVFIRTRLTNARSEAANLTAKNLKR
IGRGYRNHGHYRVRILLYTAGLRPC

 

Blast result :
Comments
ISAar13 is 51% aa similar to IS204.
References
1] ISfinder annotation (2009).