ISBco2
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAWV01000001 | ND | Bacillus coagulans | Bacillus coagulans 36D1 |
DNA section
IS Length : 1574 bp
Ends
IR Length : 16/19
IRL : CCCAGATTACGAAAGTAAAATAGTAATTTAAAATAAAAAAGTGCCCCATC
IRR : CCCAAATTACGAAAGTGCAGCGATTTGATAGCTAAAATCCACACACGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTACATCAT | TTCATTTATT | 0 |
DNA sequence
CCCAGATTACGAAAGTAAAATAGTAATTTAAAATAAAAAAGTGCCCCATCCTTTGGTATAATTGATTTTGAAAAAAAACAATAACCAAGAAAGGGGGCAC
CTTTAAGGTGAATTATATCATTCCTGTCTCAAGAATTAAATATGAATTTAATTTAAAGAATAGTACAAAATTTAGTGGCATCCTCCCATTTCTGCAATTT
CTGGAACGGATGAAAACCCAGCAGACTTTCCGGGGGTTTGATTGCTTAAAGAAAGACAATGCCAAATTTCCTCTAAGTAAAATATTTGTATATCTGATTG
CGGGCTGGATGGCAGATTGCTCCCGTATGTTTCATTTTCAATCACTCCAGAATGACCCTTTGATTCGTGCTTTCTTAGGAGGAAAATGCCCGCATTATAC
GCTTTTAAGCAAGGATCTATTAAGGTTGGAGAAAATCGAGGATGCTGCCATAGAATTCAAAGAACGGGTGATGGACATCATCGAACCATGGCTGGATTCC
GATCTCATTCTTGACTTTGATTCAAGTGTCGAAACGGTTTATGGAAACCAGGAGGGAGCGAAAATCGGGGTGAACCCCCATAAGCCGGGCAGAAAAAGCT
ACCACCCCCTTCTCGTTTTTGAAGGAAAATCCCATCTTTGCTTAAACGGTGTGCTAAGACCGGGAAACGTCCATTCAGCTGACAACGGAATTGAATTTGC
CGAGGAAACCTATCGATTGCTTTCCGCTCAGTACCTTATCCGGTACGCCCGTTTTGACAAGGGATTTGGCGGAGAAAATTTTTACAGTTATTGGGAGCAG
CAGAAGATTAACTACGCCGGCAAACTGAAATGGACATCAAGATTGAAAAAGTATGTTGAAAACGACAATTCTCCGTGGATCCGGTATGTTGATGATGAGC
TGATTGTTATAGAGGGAAAAACAGTCTACTACCAAGCAACTTCCTGGGAAAAGCCAAGAAGAGTTGCGGTCATCCGAAAAGCTGACAAGTATGAGGAAGA
CCAGCTTCAATTGTTTGATTTTCTCTGGGATTATGAAGCCATTGTGACAACGATGGACTGGGAACCTATGGATATTTGGAGATTTTACAATCAGAGAGCC
TGTCTGGAAAACTATATCAAAGAGTCTAAATATGGTTTTTCGATGGACAAGATTCCAACAGATTCTTTCGGGGCAAATCATATGGATCTTCTGATTAAAT
TACTGGCGTACAATTTATTCGAGATCTTTAAAAAGGACCATTGCCCGGCTGCGTTCAAGTCCTATACCATCAGGCGGTTTCGAAGAGAGTTTATTTATTC
GGCCGGCGTGCTGACGTCTCACAGCCGGAGGGTCTCATTGAACATTTGTGAGACATATGCCCACAAATGGGCATTCCGGAAAATGATTCAAAGTGTGCGC
ATGATTGATTGAGAGACAGGAACTGAATACTGGAAATTAAAAAGCCCGCAAAGGTGGGGAGGGGGAAAGTATACCTTCAACCACCTGAAATTATAGATTT
GGATTCCATATTTTACATTTACTTCCACGTGTGTGGATTTTAGCTATCAAATCGCTGCACTTTCGTAATTTGGG
CTTTAAGGTGAATTATATCATTCCTGTCTCAAGAATTAAATATGAATTTAATTTAAAGAATAGTACAAAATTTAGTGGCATCCTCCCATTTCTGCAATTT
CTGGAACGGATGAAAACCCAGCAGACTTTCCGGGGGTTTGATTGCTTAAAGAAAGACAATGCCAAATTTCCTCTAAGTAAAATATTTGTATATCTGATTG
CGGGCTGGATGGCAGATTGCTCCCGTATGTTTCATTTTCAATCACTCCAGAATGACCCTTTGATTCGTGCTTTCTTAGGAGGAAAATGCCCGCATTATAC
GCTTTTAAGCAAGGATCTATTAAGGTTGGAGAAAATCGAGGATGCTGCCATAGAATTCAAAGAACGGGTGATGGACATCATCGAACCATGGCTGGATTCC
GATCTCATTCTTGACTTTGATTCAAGTGTCGAAACGGTTTATGGAAACCAGGAGGGAGCGAAAATCGGGGTGAACCCCCATAAGCCGGGCAGAAAAAGCT
ACCACCCCCTTCTCGTTTTTGAAGGAAAATCCCATCTTTGCTTAAACGGTGTGCTAAGACCGGGAAACGTCCATTCAGCTGACAACGGAATTGAATTTGC
CGAGGAAACCTATCGATTGCTTTCCGCTCAGTACCTTATCCGGTACGCCCGTTTTGACAAGGGATTTGGCGGAGAAAATTTTTACAGTTATTGGGAGCAG
CAGAAGATTAACTACGCCGGCAAACTGAAATGGACATCAAGATTGAAAAAGTATGTTGAAAACGACAATTCTCCGTGGATCCGGTATGTTGATGATGAGC
TGATTGTTATAGAGGGAAAAACAGTCTACTACCAAGCAACTTCCTGGGAAAAGCCAAGAAGAGTTGCGGTCATCCGAAAAGCTGACAAGTATGAGGAAGA
CCAGCTTCAATTGTTTGATTTTCTCTGGGATTATGAAGCCATTGTGACAACGATGGACTGGGAACCTATGGATATTTGGAGATTTTACAATCAGAGAGCC
TGTCTGGAAAACTATATCAAAGAGTCTAAATATGGTTTTTCGATGGACAAGATTCCAACAGATTCTTTCGGGGCAAATCATATGGATCTTCTGATTAAAT
TACTGGCGTACAATTTATTCGAGATCTTTAAAAAGGACCATTGCCCGGCTGCGTTCAAGTCCTATACCATCAGGCGGTTTCGAAGAGAGTTTATTTATTC
GGCCGGCGTGCTGACGTCTCACAGCCGGAGGGTCTCATTGAACATTTGTGAGACATATGCCCACAAATGGGCATTCCGGAAAATGATTCAAAGTGTGCGC
ATGATTGATTGAGAGACAGGAACTGAATACTGGAAATTAAAAAGCCCGCAAAGGTGGGGAGGGGGAAAGTATACCTTCAACCACCTGAAATTATAGATTT
GGATTCCATATTTTACATTTACTTCCACGTGTGTGGATTTTAGCTATCAAATCGCTGCACTTTCGTAATTTGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 108 | 1412 | + | No |
Chemistry : DDE
ORF sequence :
MNYIIPVSRIKYEFNLKNSTKFSGILPFLQFLERMKIQQTFRGFDCLKKDNAKFPLSKIFVYLIAGWMADCSRMFHFQSLQNDPLIRAFLGGKCPHYTLL
SKDLLRLEKIEDAAIEFKERVMDIIEPWLDSDLILDFDSSVETVYGNQEGAKIGVNPHKPGRKSYHPLLVFEGKSHLCLNGVLRPGNVHSADNGIEFAEE
TYRLLSAQYLIRYSRFDKGFGGEKFYSYWEQQKINYAGKLKWTSRLKKYVENDNSPWIRYVDDELIVIEGKTVYYQATSWEKPRRVAVIRKADKYEEDQL
QLFDFLWDYEAIVTTMDWEPMDIWRFYNQRACLENYIKESKYGFSMDKIPTDSFGANHMDLLIKLLAYNLFEIFKKDHCPAAFRSYTIRRFRREFIYSAG
VLTSHSRRVSLNICETYAHKWAFRKMIQSVRMID
SKDLLRLEKIEDAAIEFKERVMDIIEPWLDSDLILDFDSSVETVYGNQEGAKIGVNPHKPGRKSYHPLLVFEGKSHLCLNGVLRPGNVHSADNGIEFAEE
TYRLLSAQYLIRYSRFDKGFGGEKFYSYWEQQKINYAGKLKWTSRLKKYVENDNSPWIRYVDDELIVIEGKTVYYQATSWEKPRRVAVIRKADKYEEDQL
QLFDFLWDYEAIVTTMDWEPMDIWRFYNQRACLENYIKESKYGFSMDKIPTDSFGANHMDLLIKLLAYNLFEIFKKDHCPAAFRSYTIRRFRREFIYSAG
VLTSHSRRVSLNICETYAHKWAFRKMIQSVRMID
Blast result :
Comments
ISBco2 is 43% aa similar to ISDre2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission