ISBco2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAWV01000001 ND Bacillus coagulans
Bacillus coagulans 36D1
DNA section
IS Length : 1574 bp

Ends


IR Length : 16/19

IRL : CCCAGATTACGAAAGTAAAATAGTAATTTAAAATAAAAAAGTGCCCCATC
IRR : CCCAAATTACGAAAGTGCAGCGATTTGATAGCTAAAATCCACACACGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTACATCATTTCATTTATT0

DNA sequence

CCCAGATTACGAAAGTAAAATAGTAATTTAAAATAAAAAAGTGCCCCATCCTTTGGTATAATTGATTTTGAAAAAAAACAATAACCAAGAAAGGGGGCAC
CTTTAAGGTGAATTATATCATTCCTGTCTCAAGAATTAAATATGAATTTAATTTAAAGAATAGTACAAAATTTAGTGGCATCCTCCCATTTCTGCAATTT
CTGGAACGGATGAAAACCCAGCAGACTTTCCGGGGGTTTGATTGCTTAAAGAAAGACAATGCCAAATTTCCTCTAAGTAAAATATTTGTATATCTGATTG
CGGGCTGGATGGCAGATTGCTCCCGTATGTTTCATTTTCAATCACTCCAGAATGACCCTTTGATTCGTGCTTTCTTAGGAGGAAAATGCCCGCATTATAC
GCTTTTAAGCAAGGATCTATTAAGGTTGGAGAAAATCGAGGATGCTGCCATAGAATTCAAAGAACGGGTGATGGACATCATCGAACCATGGCTGGATTCC
GATCTCATTCTTGACTTTGATTCAAGTGTCGAAACGGTTTATGGAAACCAGGAGGGAGCGAAAATCGGGGTGAACCCCCATAAGCCGGGCAGAAAAAGCT
ACCACCCCCTTCTCGTTTTTGAAGGAAAATCCCATCTTTGCTTAAACGGTGTGCTAAGACCGGGAAACGTCCATTCAGCTGACAACGGAATTGAATTTGC
CGAGGAAACCTATCGATTGCTTTCCGCTCAGTACCTTATCCGGTACGCCCGTTTTGACAAGGGATTTGGCGGAGAAAATTTTTACAGTTATTGGGAGCAG
CAGAAGATTAACTACGCCGGCAAACTGAAATGGACATCAAGATTGAAAAAGTATGTTGAAAACGACAATTCTCCGTGGATCCGGTATGTTGATGATGAGC
TGATTGTTATAGAGGGAAAAACAGTCTACTACCAAGCAACTTCCTGGGAAAAGCCAAGAAGAGTTGCGGTCATCCGAAAAGCTGACAAGTATGAGGAAGA
CCAGCTTCAATTGTTTGATTTTCTCTGGGATTATGAAGCCATTGTGACAACGATGGACTGGGAACCTATGGATATTTGGAGATTTTACAATCAGAGAGCC
TGTCTGGAAAACTATATCAAAGAGTCTAAATATGGTTTTTCGATGGACAAGATTCCAACAGATTCTTTCGGGGCAAATCATATGGATCTTCTGATTAAAT
TACTGGCGTACAATTTATTCGAGATCTTTAAAAAGGACCATTGCCCGGCTGCGTTCAAGTCCTATACCATCAGGCGGTTTCGAAGAGAGTTTATTTATTC
GGCCGGCGTGCTGACGTCTCACAGCCGGAGGGTCTCATTGAACATTTGTGAGACATATGCCCACAAATGGGCATTCCGGAAAATGATTCAAAGTGTGCGC
ATGATTGATTGAGAGACAGGAACTGAATACTGGAAATTAAAAAGCCCGCAAAGGTGGGGAGGGGGAAAGTATACCTTCAACCACCTGAAATTATAGATTT
GGATTCCATATTTTACATTTACTTCCACGTGTGTGGATTTTAGCTATCAAATCGCTGCACTTTCGTAATTTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa1081412+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYIIPVSRIKYEFNLKNSTKFSGILPFLQFLERMKIQQTFRGFDCLKKDNAKFPLSKIFVYLIAGWMADCSRMFHFQSLQNDPLIRAFLGGKCPHYTLL
SKDLLRLEKIEDAAIEFKERVMDIIEPWLDSDLILDFDSSVETVYGNQEGAKIGVNPHKPGRKSYHPLLVFEGKSHLCLNGVLRPGNVHSADNGIEFAEE
TYRLLSAQYLIRYSRFDKGFGGEKFYSYWEQQKINYAGKLKWTSRLKKYVENDNSPWIRYVDDELIVIEGKTVYYQATSWEKPRRVAVIRKADKYEEDQL
QLFDFLWDYEAIVTTMDWEPMDIWRFYNQRACLENYIKESKYGFSMDKIPTDSFGANHMDLLIKLLAYNLFEIFKKDHCPAAFRSYTIRRFRREFIYSAG
VLTSHSRRVSLNICETYAHKWAFRKMIQSVRMID

 

Blast result :
Comments
ISBco2 is 43% aa similar to ISDre2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission