ISGpr4
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NW_002475344 | ND | Gamma proteobacterium | Gamma proteobacterium HTCC5015 |
DNA section
IS Length : 1681 bp
Ends
IR Length : 13
IRL : CCTAAATTCTGCAGAATTTAACAATGAAAGGAGGAAAAGGTAAACTACTT
IRR : CCTAAATTCTGCAATCTGTGTTTTTTCGTAGCTCAAACACCTTAGATGAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGTTCTGAAAAAA | TTAAA | AGATCTGGCTTG | 5 |
DNA sequence
CCTAAATTCTGCAGAATTTAACAATGAAAGGAGGAAAAGGTAAACTACTTCAATTAGTTACGACCAAATAACAATTAAAGTAGAGTCACCTTTTCCATGA
GTAAGAATACTAAGAAATCTGCCCGAAAACCAGCCCCAAAAATCCGCTATCAGTCCTCAGGCAAAGGGCTCACCAGCCAAGCTGGGGTCATCCCTGCGGT
TCATTTTCTAAATCAACTCGGATTCAATGACGTTTGCGATAAGCATATCCACTTTCAGCGTGGTGACAATGCCACCTATAGTCTCACCGACTCCGTTTTC
ATGACATTGTTGGGCATGATTGCGGGAGCCAATTCCCTTTTAAAAGTGGTTGCTGTCTGGTCCGATCAAGTGTTGCGCGATGTTAGCGGTTGGTTGTCTG
TGCCGGATGACAGCACGCTGGGGCGAATTTTCCGGCAAGGTAAACAGAAGCATGTGGCGCAACTGGAAGAAGTGAATCACCGACTACGTCATCGAGTATG
GGAGCGTTGCCTAAAAAGTGGGGCGATGCAACCCGGTGATTTTTACCGTTCATGGGTTGATGTCGACTCTACCGTGAAAACGGTCTTTGGTCGACAGGAA
GGAGCGGCAAAAGGCTACAATGCTGCGAAGAAAGGAGCCCTTTCCTATCATCCGCTGGTCGCCTTTAGTAGTCACACGAAGGAGATTCTACAAGCCTGGT
TGCGAACCGGAAGCGCTTACACCAGTAATGGTATCGTCGAGTTTATGAAACAATTAGCCGTGCAGATGCCTCCGCGAATGCGCATGCTGTTCCGAGGAGA
TTCCGGTTTCTTCTCTGGCGAGTTGATGGACTGGCTGGAGCAAGGTGGCCACGGCTATCTCATCAAGGTGAAGCTGAAAGGACTGAGCGCTTTGCTTGAT
AAACAAACTTGGCAGGCGGTTTCAAATTGCCCGGGGTGGGAGCAGTGTGAGTTCACTCATGCCTGTGGTAAGTGGTCACGGTCCCGACGATTCATTGCGG
TTAGGCGTCTTGCAAAAGTGAAAAAAGAAGGACCACAACAGTCTCTGATTATCGAGCCGGTTTATGACTATTTCTGTTATGTCACCACCGAGCGATTAAC
GCCTTGGCAAGCACACAAAACCTACGGTCAGCGCGCGACCTGTGAAACCTGGCTGGATGAAGCGAAGAATCAGATGGGCCTGGCACACTTGAAAAGCCAC
GACTTTGTCGCTAGTTCACTCATGTTTCAAAGCGCTGTGCTTGCCTACAACACCATTCGGTGGATGGCACTTATCAGCAACCATCGCACACTAAGGCGTT
GGGAAATCCAGACGATACGCGCATTTCTGGTTCGGACTGCAGGACAGCTGCTTACTGGAAGTAATCAACTGAAGGTAAAAATACCCGATAAGCATCTCTA
TCCCAGTGAATGGGATGCTTGGCTGAAGTTATCATTTATTAGCGAAGCCTAACCATAAAATTTCCGCCAAAACGATAAAAATAAGTGGCTTTCAAACAGG
GCCAAGCGCTCCTATTGCCTACTGAATACCAAAATCGGAAAATAGGTCGCCATTTAACCAAACAACGCAATGATTACTGCCAAGCTAATCTCAATCCTTG
TCCGAATATCAGAGTGAATGACTTTCAATCGGTCATCTAAGGTGTTTGAGCTACGAAAAAACACAGATTGCAGAATTTAGG
GTAAGAATACTAAGAAATCTGCCCGAAAACCAGCCCCAAAAATCCGCTATCAGTCCTCAGGCAAAGGGCTCACCAGCCAAGCTGGGGTCATCCCTGCGGT
TCATTTTCTAAATCAACTCGGATTCAATGACGTTTGCGATAAGCATATCCACTTTCAGCGTGGTGACAATGCCACCTATAGTCTCACCGACTCCGTTTTC
ATGACATTGTTGGGCATGATTGCGGGAGCCAATTCCCTTTTAAAAGTGGTTGCTGTCTGGTCCGATCAAGTGTTGCGCGATGTTAGCGGTTGGTTGTCTG
TGCCGGATGACAGCACGCTGGGGCGAATTTTCCGGCAAGGTAAACAGAAGCATGTGGCGCAACTGGAAGAAGTGAATCACCGACTACGTCATCGAGTATG
GGAGCGTTGCCTAAAAAGTGGGGCGATGCAACCCGGTGATTTTTACCGTTCATGGGTTGATGTCGACTCTACCGTGAAAACGGTCTTTGGTCGACAGGAA
GGAGCGGCAAAAGGCTACAATGCTGCGAAGAAAGGAGCCCTTTCCTATCATCCGCTGGTCGCCTTTAGTAGTCACACGAAGGAGATTCTACAAGCCTGGT
TGCGAACCGGAAGCGCTTACACCAGTAATGGTATCGTCGAGTTTATGAAACAATTAGCCGTGCAGATGCCTCCGCGAATGCGCATGCTGTTCCGAGGAGA
TTCCGGTTTCTTCTCTGGCGAGTTGATGGACTGGCTGGAGCAAGGTGGCCACGGCTATCTCATCAAGGTGAAGCTGAAAGGACTGAGCGCTTTGCTTGAT
AAACAAACTTGGCAGGCGGTTTCAAATTGCCCGGGGTGGGAGCAGTGTGAGTTCACTCATGCCTGTGGTAAGTGGTCACGGTCCCGACGATTCATTGCGG
TTAGGCGTCTTGCAAAAGTGAAAAAAGAAGGACCACAACAGTCTCTGATTATCGAGCCGGTTTATGACTATTTCTGTTATGTCACCACCGAGCGATTAAC
GCCTTGGCAAGCACACAAAACCTACGGTCAGCGCGCGACCTGTGAAACCTGGCTGGATGAAGCGAAGAATCAGATGGGCCTGGCACACTTGAAAAGCCAC
GACTTTGTCGCTAGTTCACTCATGTTTCAAAGCGCTGTGCTTGCCTACAACACCATTCGGTGGATGGCACTTATCAGCAACCATCGCACACTAAGGCGTT
GGGAAATCCAGACGATACGCGCATTTCTGGTTCGGACTGCAGGACAGCTGCTTACTGGAAGTAATCAACTGAAGGTAAAAATACCCGATAAGCATCTCTA
TCCCAGTGAATGGGATGCTTGGCTGAAGTTATCATTTATTAGCGAAGCCTAACCATAAAATTTCCGCCAAAACGATAAAAATAAGTGGCTTTCAAACAGG
GCCAAGCGCTCCTATTGCCTACTGAATACCAAAATCGGAAAATAGGTCGCCATTTAACCAAACAACGCAATGATTACTGCCAAGCTAATCTCAATCCTTG
TCCGAATATCAGAGTGAATGACTTTCAATCGGTCATCTAAGGTGTTTGAGCTACGAAAAAACACAGATTGCAGAATTTAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1356 bp | 451 aa | 97 | 1452 | + | No |
Chemistry : DDE
ORF sequence :
MSKNTKKSARKPAPKIRYQSSGKGLTSQAGVIPAVHFLNQLGFNDVCDKHIHFQRGDNATYSLTDSVFMTLLGMIAGANSLLKVVAVWSDQVLRDVSGWL
SVPDDSTLGRIFRQGKQKHVAQLEEVNHRLRHRVWERCLKSGAMQPGDFYRSWVDVDSTVKTVFGRQEGAAKGYNAAKKGALSYHPLVAFSSHTKEILQA
WLRTGSAYTSNGIVEFMKQLAVQMPPRMRMLFRGDSGFFSGELMDWLEQGGHGYLIKVKLKGLSALLDKQTWQAVSNCPGWEQCEFTHACGKWSRSRRFI
AVRRLAKVKKEGPQQSLIIEPVYDYFCYVTTERLTPWQAHKTYGQRATCETWLDEAKNQMGLAHLKSHDFVASSLMFQSAVLAYNTIRWMALISNHRTLR
RWEIQTIRAFLVRTAGQLLTGSNQLKVKIPDKHLYPSEWDAWLKLSFISEA
SVPDDSTLGRIFRQGKQKHVAQLEEVNHRLRHRVWERCLKSGAMQPGDFYRSWVDVDSTVKTVFGRQEGAAKGYNAAKKGALSYHPLVAFSSHTKEILQA
WLRTGSAYTSNGIVEFMKQLAVQMPPRMRMLFRGDSGFFSGELMDWLEQGGHGYLIKVKLKGLSALLDKQTWQAVSNCPGWEQCEFTHACGKWSRSRRFI
AVRRLAKVKKEGPQQSLIIEPVYDYFCYVTTERLTPWQAHKTYGQRATCETWLDEAKNQMGLAHLKSHDFVASSLMFQSAVLAYNTIRWMALISNHRTLR
RWEIQTIRAFLVRTAGQLLTGSNQLKVKIPDKHLYPSEWDAWLKLSFISEA
Blast result :
Comments
ISGpr4 is 46% aa similar to ISEcp1.
References
1] ISfinder annotation (2009)
2] Lily,E., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Lily,E., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.