ISAar12

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1736 bp

Ends


IR Length : 15/22

IRL : CCCAAGTATTTCATGACGGGGCCAGTAATTAAGCGTCATTAACGAGGAAA
IRR : CCCAGATCTTTCATGGAAGCGCAGAACCCCACCGGAACCGGCACCCCACC

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGCCTGCGTTAGTGGGTTATGT4

DNA sequence

CCCAAGTATTTCATGACGGGGCCAGTAATTAAGCGTCATTAACGAGGAAAAAGCGATCCTGAACTGGGAAAATAAAGGTGTCTAAGCCATATTCTCAGCA
GTTCAAAGGATCACTCTCTCGGTGAACAACAATACCGGCCTTTACCCCTACGTACCAACCATGACCACGAACCAAGCCCTGGTCTCCCACGCAGGGCTTA
CCACCCTGAGCGACCTGCTCAACGCGCTGGGTTTCCGCAAGCTCTGCGATAACAGGCTCTCGCAATTCGTTCCTGCTTTAGCCGTTCACCGGCCCGGGAA
GATGATCGCAGATTTGTCCCTCATGCTCGCCGCCGGCGGCGAGCAAGTCAGCGATACCGACCAGCTACGGACCACTCAAGGCCTCTTCGGTCCGGTTGCC
TCTGACCCGACGTTCAGCCGGTTCTTCAGCAGAATCAGTAAACATCCCGGGGCTTTTGACTACGCATTCGCGACCATGCACCGGCAAGTGCGGGCCAAAC
TATGGGCAGCAGCAGGCAAACGCAACCCCGCAATACGGGCATCCCGAACCAATCCTCTGACCATCGACATCGACGCGTCCCTAGTCAACGTTCATTCAGA
CAAAGAAGGTGCCAAAGGCAACTATAAAGGCGGGTACGGCTACTCACCGATGATCGCCATGGCCGACTACGGAAAAACCAACGGCACCGGTGAAGTCCTC
GCCGTACGCTTGCGCCCAGGAAATAAGGCAGCAAACTCAGCGAAGGACCATATCAGCATCCTGACCGAAGCACTGGAACAACTACCAGACGAATTCTATG
ACGAACAGACAACGTTGATCGGTGAGAAGATCATGGTCCGCACCGATAGCGCTGGCGCCACCCGAGAATTCTTGAAGCATGTTGATTCTTTGGGTCTGCA
ATTTTCCACCTCATATACGTTGCCCGTGGTCAAGGAACGCTTCGTGCGGTGGATCAATCAGAAAAAGTACTGGGAGCCAGCGCTCACCGCGGACGGTGAA
CACCGTAATAACGCGTGGGTGATTGATGCTTCCAAGGTCATTGAACTAAACGATTACCCGCCAGGAACCAGAATTTATCTTCGTGCTGAGCCGTTGCATC
CGGGGGCGAAAGCAAGCCTGTTCGACACTGATGGGAATCGAGTGACCGCGTTTCTGACGAACTCTCCACGCTACGATCCCGCTTTCTTGGATGCCCGTCA
TCGCGCCCGTGGGCGTTGTGAAAACAGGATCAAGTCGCTGAAAGCCGCAGGGCTGGGCAAACTGCCATTCGCTTCGTTCGCGGCGAATCAAGCGTGGGCT
AACTTGGCCATGTTTGCGTTGAATCTGACGTTGTGGCTGCAGTTGGTGGTACTGCCTGCGGGGCATCAGGCCGGGAGCTGGGATTTGAAACGGTGGCGGT
ACCGGGTGTGGTCTATGGCCGGGAAGCTGACTAAGAGCGGTCGCCAACCCCGGTTGCTGATCAATGATCAAACGCCGGAAGCTCGATTAGTCACGTTACT
CAAGGAACAAATCAACGGATTGCGTCAGCGTTGGGGCGTCGGTTCACTGCGAACCTGAGTGTTCAAGTACTAGTCATTAGTGTTTTCAAGTGGGAGGGAC
AATATTTCGGTGTGTGGTGGCCGGCGCTGGCGTCAGCGATATGGCGCTCTTTGTCGTACTAGAAATCAAGAACCCCACTGGATACTGGTGGGGTGCCGGT
TCCGGTGGGGTTCTGCGCTTCCATGAAAGATCTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1398 bp465 aa1611558+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTNQALVSHAGLTTLSDLLNALGFRKLCDNRLSQFVPALAVHRPGKMIADLSLMLAAGGEQVSDTDQLRTTQGLFGPVASDPTFSRFFSRISKHPGAFD
YAFATMHRQVRAKLWAAAGKRNPAIRASRTNPLTIDIDASLVNVHSDKEGAKGNYKGGYGYSPMIAMADYGKTNGTGEVLAVRLRPGNKAANSAKDHISI
LTEALEQLPDEFYDEQTTLIGEKIMVRTDSAGATREFLKHVDSLGLQFSTSYTLPVVKERFVRWINQKKYWEPALTADGEHRNNAWVIDASKVIELNDYP
PGTRIYLRAEPLHPGAKASLFDTDGNRVTAFLTNSPRYDPAFLDARHRARGRCENRIKSLKAAGLGKLPFASFAANQAWANLAMFALNLTLWLQLVVLPA
GHQAGSWDLKRWRYRVWSMAGKLTKSGRQPRLLINDQTPEARLVTLLKEQINGLRQRWGVGSLRT

 

Blast result :
Comments
ISAar12 is 83% aa similar to ISAar9.
References
1] ISfinder annotation (2009).