ISAar10

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1602 bp

Ends


IR Length : 14/20

IRL : CCCGGGTATTTCATGAAGGCCGGTAGTCATTAACTGACTTAAAAGATGAA
IRR : CCCAAATTTTTCATGAGGACTCTGACGGCCGCCGAATTCCGATACCCAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGTGTGCTCTAACGCTAACTAT4

DNA sequence

CCCGGGTATTTCATGAAGGCCGGTAGTCATTAACTGACTTAAAAGATGAAAAGGTGACCTGAACTGGGAAAATGGGAGTGTCTAAGCTTCCAAAATACCC
GTTCAAAGGATCACCTTTTCAATGAACCATTCTACCCACGTTTTCCCTGCCTTCTCGACCCAACTCACCGGCCAGGCCCTGGTCTCTCATGCAGGGTTGT
CGGTGCTGACCAGTTTCCTGAATGCCTTGGACTTCCGCAGCCTCTGCGAGAACCGGTTCAGCCAGTTCGTGCCAGCCACCGCAACCCACCGTCCAGGCAA
GATCCTCGGAGCACTGGCTCTATCGTTGGCGGCCGGCGGTGAACAAGCCACAGATATTGACCAGCTACGCACCGCACCAGAACTCTTCGGCTCCGTAGCT
TCTGATGCCACGGTCAGCCGATTCATGGGCCGGATCAAAGAACAGCCAGAAGCTTTCTCCTACGGGTTCGCCACCATGACCCGCAACCTGCGATCCAAAG
TCTGGGCGGCAGCCGGAGCACGGAACCCCGCCCGGCTGGCCACGCCAGCCAACCCGCTGACCATCGACATCGACGCCTCCCTGGTGCAGGTCCATTCCGA
AAAAGAATCCAGCGCAGGAACGTATAAAGGCGGATACGGGTTCTCGCCGATGATCGCGATGGCCGACTACGGCAAAGCCAATGGAACCGGCGAAGTCCTC
GCGGTCCAGTTGCACCCGGGAAACCGGGGCGCGAATTCCGCCAAATCCCACATCGACGTACTCAACCAAGCGCTGGCGCAGCTGCCTGATGATTTCTACG
ACGAGCACGGAAACCTGTATCGAGAGAAGATCCTGGTCCGTACCGACAGTGCTGGGTCCTCCCGGGAGTTCTTGCACTACCTGGATTCGTTGGGGATCCA
ATTCTCCACCTCGTACTCGCTACCGGTCATCAAGGAGCGGTTCATCCGGTGGATCGATGAGAAGAAATACTGGGAACCAGCGCTGACCGCTGACGGGCAG
GAACGTGATGACGCGTGGGTGATCGACGCGAGCAAGGTGATCGAGCTGAAGGACTACCCTCCAGGAACCCGGATCTATTTGCGGGCCGAGCCGTTGCATC
CCGGCGCGAAAGCGACCTTGTTCGATACGGACGGGAATAGGGTGACTGCGTTCTTGACCAATAGCCCGCGGTTCAACGTGGCGTTCCTCGATGCCCGGCA
TCGTGCGCGTGGCCGGTGCGAAAACAGGATCAAAACCCTGAAGAGCGCAGGGTTGGGCAAGCTGCCGTATTGGTCTTTTGCCGCGAACCAAGCATGGGCT
GATCTGGCGATGTTCGCACTGAATCTGGTGTCGTGGCTGCAGCTGGCCGTGCTACCCGGTGGTCATGACGCTTCGGTGTGGGATTTGAAGCGATGGCGGC
ACGGATTGCTGGCCGCCTGAACTGGTGATTGTCCTGTTGTTTCTTTGGTTGCGAATGGTCATCACAATCCAGGCAAGTGGAGCCTGGCCCCCAGCGCCGG
TGCGTCAAGGCGCTATTTGGCATGGGCGGAATCAGTAACGGCCGCCGGGAATCCTGGGTATCGGAATTCGGCGGCCGTCAGAGTCCTCATGAAAAATTTG
GG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1299 bp432 aa1221420+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNHSTHVFPAFSTQLTGQALVSHAGLSVLTSFLNALDFRSLCENRFSQFVPATATHRPGKILGALALSLAAGGEQATDIDQLRTAPELFGSVASDATVSR
FMGRIKEQPEAFSYGFATMTRNLRSKVWAAAGARNPARLATPANPLTIDIDASLVQVHSEKESSAGTYKGGYGFSPMIAMADYGKANGTGEVLAVQLHPG
NRGANSAKSHIDVLNQALAQLPDDFYDEHGNLYREKILVRTDSAGSSREFLHYLDSLGIQFSTSYSLPVIKERFIRWIDEKKYWEPALTADGQERDDAWV
IDASKVIELKDYPPGTRIYLRAEPLHPGAKATLFDTDGNRVTAFLTNSPRFNVAFLDARHRARGRCENRIKTLKSAGLGKLPYWSFAANQAWADLAMFAL
NLVSWLQLAVLPGGHDASVWDLKRWRHGLLAA

 

Blast result :
Comments
ISAar10 is 95% aa similar to ISAar9.
References
1] ISfinder annotation (2009).