ISSsu5
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009442 | ND | Streptococcus suis | Streptococcus suis 05ZYH33 |
DNA section
IS Length : 1683 bp
Ends
IR Length : 27/34
IRL : CCCTGAATAATTCATACTTTTTAATTGAAACCGTCTGAAACTGCCTAACG
IRR : CCCTGAATAATTCATAGCTCTAAATTTAACCTGTTTTTTTGAACAAATTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AACGAAAGATGTTTA | TATCATTTCTTG | 0 |
DNA sequence
CCCTGAATAATTCATACTTTTTAATTGAAACCGTCTGAAACTGCCTAACGGCAGTCTGATAATTACTTTTTTAGTTTCACCCCTTAAGTGATGAAAAAAG
AACCCCATTCTGCTATGGTAAAGGTGACGAAACCAACCATAAGAAAGGAGTTCTTCTCATGACTAGCTTACACAAAAATCAAGTTAAATTCAATTCAAAT
ATCACTATTTCACATACCGGTGGTCGTCTATCAAGTGATTCGGGGTTAGTCCTGGTTAAAGAATTAATGAATACCTTCGGCTTTTCGCACTTAGCTAAAC
AATGGCTCCATATTACAGATCATCGGGCTTATTTTACCCATGATAACTTAGCGATATTGGAACAGCTTATTATGCAATTAATTGCTGGTTACTCGGCAGA
CTCATCAGCTAATCTATTAAGACGGGATCCTGTCTTTCAAGCTGTACTCGGTAAAAAACAGTTGGCATCACAATCCTCAATCTCACGGTTTCTGGATCGT
TTCACCGAGGAGAACATCGATCAACTCCAAGCATTAAATCAGTCATTGATTGATAAAGCACGTTTAATTCGCAATGACACCGAGTTAATCATTGATGTCG
ATTCCACACATTCGGATACCTTTGGACGCCAAGAACAAACAGATTATAATGCCCATTATCAAACCTACGGCTATCACCCATTAGTTGCCTTTGATGGACT
GACCGGAGATTTCTTAAAAGCTGAACTGCGTTCAGGCAATCAGTACACATCTAAAGGTGTAAAAGCCTTTATCAACCCGCTTTTACACCACTACAAGAGC
ACGTTACCTCATACCGAGATATTGGTTCGGGGTGACAGCGGCTTCGCCACACCAGAGGTGTATGAGTCTTGTGAAGCAACTGAAAGCCAGTACGTTATCC
GATTAAAGAGCAATCGGAGGTTAAGTCAGTTAGCTGAACATTCTGTTCTTTACGGGGACAATCAAGAATGGGAAGAGCGAGAAGTGCAGTATTTTTCACT
ACCTTATCAAGCACAATCCTGGTCGAAACCTCGTCGTGTCTGTATACGCTCCGTCCGTGAAGGAGGAGAATTGCTATTTCATCATGCGTTTATTGTGACT
AATCTATCCGACAATGTCTCGCCTGAAGTCATATTTTCTCTTTACGGCAAGCGAGGAACAATGGAAAATTTCATCAAAGAAGCGAAAGGTGGCTTTTACT
TCGATAAAACAGATAGCCCGCGTTTCTTAGAAAATCATGTCAGAATGATGATCAGTGTCCTTGCATACAACCTCGTTAATTTTTTAAAAAGCATTGGTTT
TGATAAAGTGAACCAGGGCATGACGATTCATTCCATCCGGCTGATATTGCTTAAAGTAGCCGGTAAACTTGTTCAGACTGGGAGACAGGTCTATCTCAAA
CTGTCAAGTTATCATGTGTATCAAACTGAATTTTATAAGGTTTTTGAACGCCTGCGGCGATCCAAACAATGGATTTAGACTAGTTATCACACAAATTTTT
TAACCGATTCTTTTTCAAGGGATTCGTCTGCCCTTAAATAGACAAATAATTTTTATTATGATCTTCTTCCGTAGGCATCCTGTTCGAAAACACATTATTT
TGGAAGAAAGTATCTGCCTAATTTAAAAATTGGCAATTTGTTCAAAAAAACAGGTTAAATTTAGAGCTATGAATTATTCAGGG
AACCCCATTCTGCTATGGTAAAGGTGACGAAACCAACCATAAGAAAGGAGTTCTTCTCATGACTAGCTTACACAAAAATCAAGTTAAATTCAATTCAAAT
ATCACTATTTCACATACCGGTGGTCGTCTATCAAGTGATTCGGGGTTAGTCCTGGTTAAAGAATTAATGAATACCTTCGGCTTTTCGCACTTAGCTAAAC
AATGGCTCCATATTACAGATCATCGGGCTTATTTTACCCATGATAACTTAGCGATATTGGAACAGCTTATTATGCAATTAATTGCTGGTTACTCGGCAGA
CTCATCAGCTAATCTATTAAGACGGGATCCTGTCTTTCAAGCTGTACTCGGTAAAAAACAGTTGGCATCACAATCCTCAATCTCACGGTTTCTGGATCGT
TTCACCGAGGAGAACATCGATCAACTCCAAGCATTAAATCAGTCATTGATTGATAAAGCACGTTTAATTCGCAATGACACCGAGTTAATCATTGATGTCG
ATTCCACACATTCGGATACCTTTGGACGCCAAGAACAAACAGATTATAATGCCCATTATCAAACCTACGGCTATCACCCATTAGTTGCCTTTGATGGACT
GACCGGAGATTTCTTAAAAGCTGAACTGCGTTCAGGCAATCAGTACACATCTAAAGGTGTAAAAGCCTTTATCAACCCGCTTTTACACCACTACAAGAGC
ACGTTACCTCATACCGAGATATTGGTTCGGGGTGACAGCGGCTTCGCCACACCAGAGGTGTATGAGTCTTGTGAAGCAACTGAAAGCCAGTACGTTATCC
GATTAAAGAGCAATCGGAGGTTAAGTCAGTTAGCTGAACATTCTGTTCTTTACGGGGACAATCAAGAATGGGAAGAGCGAGAAGTGCAGTATTTTTCACT
ACCTTATCAAGCACAATCCTGGTCGAAACCTCGTCGTGTCTGTATACGCTCCGTCCGTGAAGGAGGAGAATTGCTATTTCATCATGCGTTTATTGTGACT
AATCTATCCGACAATGTCTCGCCTGAAGTCATATTTTCTCTTTACGGCAAGCGAGGAACAATGGAAAATTTCATCAAAGAAGCGAAAGGTGGCTTTTACT
TCGATAAAACAGATAGCCCGCGTTTCTTAGAAAATCATGTCAGAATGATGATCAGTGTCCTTGCATACAACCTCGTTAATTTTTTAAAAAGCATTGGTTT
TGATAAAGTGAACCAGGGCATGACGATTCATTCCATCCGGCTGATATTGCTTAAAGTAGCCGGTAAACTTGTTCAGACTGGGAGACAGGTCTATCTCAAA
CTGTCAAGTTATCATGTGTATCAAACTGAATTTTATAAGGTTTTTGAACGCCTGCGGCGATCCAAACAATGGATTTAGACTAGTTATCACACAAATTTTT
TAACCGATTCTTTTTCAAGGGATTCGTCTGCCCTTAAATAGACAAATAATTTTTATTATGATCTTCTTCCGTAGGCATCCTGTTCGAAAACACATTATTT
TGGAAGAAAGTATCTGCCTAATTTAAAAATTGGCAATTTGTTCAAAAAAACAGGTTAAATTTAGAGCTATGAATTATTCAGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1320 bp | 439 aa | 159 | 1478 | + | No |
Chemistry : DDE
ORF sequence :
MTSLHKNQVKFNSNITISHTGGRLSSDSGLVLVKELMNTFGFSHLAKQWLHITDHRAYFTHDNLAILEQLIMQLIAGYSADSSANLLRRDPVFQAVLGKK
QLASQSSISRFLDRFTEENIDQLQALNQSLIDKARLIRNDTELIIDVDSTHSDTFGRQEQTDYNAHYQTYGYHPLVAFDGLTGDFLKAELRSGNQYTSKG
VKAFINPLLHHYKSTLPHTEILVRGDSGFATPEVYESCEATESQYVIRLKSNRRLSQLAEHSVLYGDNQEWEEREVQYFSLPYQAQSWSKPRRVCIRSVR
EGGELLFHHAFIVTNLSDNVSPEVIFSLYGKRGTMENFIKEAKGGFYFDKTDSPRFLENHVRMMISVLAYNLVNFLKSIGFDKVNQGMTIHSIRLILLKV
AGKLVQTGRQVYLKLSSYHVYQTEFYKVFERLRRSKQWI
QLASQSSISRFLDRFTEENIDQLQALNQSLIDKARLIRNDTELIIDVDSTHSDTFGRQEQTDYNAHYQTYGYHPLVAFDGLTGDFLKAELRSGNQYTSKG
VKAFINPLLHHYKSTLPHTEILVRGDSGFATPEVYESCEATESQYVIRLKSNRRLSQLAEHSVLYGDNQEWEEREVQYFSLPYQAQSWSKPRRVCIRSVR
EGGELLFHHAFIVTNLSDNVSPEVIFSLYGKRGTMENFIKEAKGGFYFDKTDSPRFLENHVRMMISVLAYNLVNFLKSIGFDKVNQGMTIHSIRLILLKV
AGKLVQTGRQVYLKLSSYHVYQTEFYKVFERLRRSKQWI
Blast result :
Comments
ISSsu5 is 55% aa similar to ISSpn5.
References
1] ISfinder annotation (2009)
2] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2, E315
2] Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. (2007) PLoS ONE 2, E315