ISfinder Mirror Site

ISAcma49

Family ISL3
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_009925	ND	Acaryochloris marina	Acaryochloris marina MBIC11017 plasmid pREB3

DNA section

IS Length : 1588 bp

Ends

IR Length : 11

IRL : GGTACGCACTCATGACGACCTGCCACCATCGTTCAATCTGGGCATAATCC
IRR : GGTACGCACTCAGTTCCTCAATCGACTGGTGGCATTTAGCGATCACATCG

Insertion site

Left flank	Direct repeat	Right flank	DR Length
ACTCACCATCA		CCACTATTCTC	0

DNA sequence

GGTACGCACTCATGACGACCTGCCACCATCGTTCAATCTGGGCATAATCCGTGACCCGAAAATCGGCCCAGAACTCATTCTTGCTTTGCTTGAGACCATA
TTCGACCCAGTTTCACCTCGGGATCTAGTCCACTTTTGGTGATGCCAATTATGCGGTAGAGGATAGAGGGGTAAACCCTTTCCAGGTATGGTTATGGAAC
TCCTCCAACAATTCCTCCCATGCCAAGACACCCTCCATTTGGATAGTTGGGATCTTGACTCCATAAACCTTCAGATAACATTCCACATTTCTTCAACTCA
AGTTTTGGCTTGTTGTCCAGTCTGTCATCAGACCGCTCACCGGTTTCACAGTCGCTATGAGCGGACATTGAGAGACCTTCCCGGTGTGGATTTCTGCTTA
ACTATCCTGCTTCAGGTCTGTAAGTTTTTCTGCCTTAATGAGACCTGCAAATGTCGCATCTTTACTGAACGTATGCCTCAAGTGGCACTCCCTTGGGCTC
GACGAACCGTCCGTTTTGCAGAACACCTGAGTAAGATCGGCCTAGCCCTCGGCGGTGAAGCCGCAGCTCGTTTAAGTTATCTGATTAATTATGAAAGTAG
TCGTAATACGACGTTGCGGGCCGTATTCAAACTTTCCCTACCGCCAGTGACAACTCCCAAAATATTAGGGGTGGATGATTTTGCATTCCGTAGGGGCCAA
CAATATGGCACCATTCTGGTGGATCTCGAAAAGCACCAACCTCTTGTCCTATTGCCAGATCGCGAGGCCGGCACGCTAGCAGATTGGTTACGGGAACATC
CAGGTGTCGAAATCGTTTCTCGTGATCGCTCGAAGACATACAAATCAGCCATAACCGCAGGTGCGCCTGATGCGATTCAGGTCGCTGATCGCTTTCACCT
GCTACAAAATTTAGAAGCAGTGCTAGAAAAAGTGTTTAACTCCAGCTCACAGGCTATCAAGACCGCAGAGTACATGCTGCTGAAATCCAAAATGACTGAG
CATCAAGAAAAAGAGTCGAAATCGTTACCTATAGATCCGCCTGTTGATCCAAGTTCACGCAAAGCTCAAAATCGAGCTAGACGATTGGCCAAATATGAAC
AGACTCTTGCTTTACGGCAACAAGGATACAAGATCAAAGATATTGCCCATCATCTGGGTATTGGGAAACGCACCGTTTATACCTATTTAGCGGCTGATAC
CTTTCCTGAATATAAGGTGATTTCCTGAAAAGAAGCCCCGTACTAAATTGGATGGATTAGGATGTCCCACTTGGGTAACTGAGGATGTCTCTCCAATCGT
TTCTCAATGCCTTTCATTGCTTGTTTAGTAAGCGAAATTCCTGTTTCATAAATCTTCTGTGTCACAGTTACAACGGGGTGATTCCCCTTCCAAGTCATGG
TGCTAGCCCATCCCAACAGGGTATCAACATCGGTTAATAAGGTTCCGTTCCAGTGTTGCTCCACAATCCCCCAACATCGCTCAATGGGGTTGTACTTGCT
GTGATAAGGCGGATAGTACAGGAGTTGAATAGCGGTGCCGATGTGATCGCTAAATGCCACCAGTCGATTGAGGAACTGAGTGCGTACC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1035 bp	344 aa	194	1228	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MELLQQFLPCQDTLHLDSWDLDSINLQITFHISSTQVLACCPVCHQTAHRFHSRYERTLRDLPGVDFCLTILLQVCKFFCLNETCKCRIFTERMPQVALP
WARRTVRFAEHLSKIGLALGGEAAARLSYLINYESSRNTTLRAVFKLSLPPVTTPKILGVDDFAFRRGQQYGTILVDLEKHQPLVLLPDREAGTLADWLR
EHPGVEIVSRDRSKTYKSAITAGAPDAIQVADRFHLLQNLEAVLEKVFNSSSQAIKTAEYMLLKSKMTEHQEKESKSLPIDPPVDPSSRKAQNRARRLAK
YEQTLALRQQGYKIKDIAHHLGIGKRTVYTYLAADTFPEYKVIS

Blast result :

Comments

ISAcma49 is 87% aa similar to ISAcma23.

References

1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)