ISApr10
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Alpha proteobacterium | Alpha proteobacterium BAL199 |
DNA section
IS Length : 1366 bp
Ends
IR Length : 12/18
IRL : GGGGTGTCGAATCCGCGAAGGAGAGCAACGCCATGAAGAAAGCTACCAGA
IRR : GGGGATGTCCCTCGCCGTGTTGAAATTTGCTCGGCAGGCGCTGTTGGTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGCCATTAGGCTC | GGGTGAAGGCAAC | 0 | |
| GCAGGAGCGCTTC | GTCCGGGCGCACG | 0 |
DNA sequence
GGGGTGTCGAATCCGCGAAGGAGAGCAACGCCATGAAGAAAGCTACCAGATCTGCCGGCGTGGTGCCGGCGGCAATCGTCGATGAGGCTTGGCAGGAAGT
CGGAGCCAGCTTCGATCGTTTCTGCCTGACGGCGGGCCTGGCGACTTTGGCGACGATGATGGATGAGGAGGCGGCCGAGCTGTGCGGCCCGCGCTACGGC
CGGGCTGCTGGGCGAGACGGGTATCGCTGGGGCAAGACCAAGGGGAAGGTCGGCTTCCACGGCGGCAAGGTCGAGATCGATCGTCCTCGCGTTCGTGCTC
GCGACGGCGGCGAGCTGGCGCTGCCGAGCTGGGAGGCGGCGCAGTCGGAAGACCTGCTCGGCAAGTGGGCGCTGAACCTGATGCTGATCAACGTCTCGAC
CCGCAAGTTCGGCCGCGCCGTCCGCCTGCCGGGCGGCGACATCCCGGCGGCCCCCGGGTCGGGAGTGTCGAAGTCGGCGGTGTCGCGGCGGTTCGTGGCG
CTGTCGGCGGAACGCATGAAGGAATGGATGGCCGCCGACTTGTCCGCCCTGGACCTGCTGGCGATCCAGATCGACGGCATCCACATCGAGGAAGACCTGA
TGCTGCTGGCCGCCGTCGGCATCGACGGCATCGGCGACAAGCATCCGCTCGGCGTGATCGAGGGGGCCAGCGAGAACGCCGCCGTGGCCCAGGCGCTGCT
CGACAACCTGGTCGGCCGCGGCCTCGATCCCGCGGTCTGCCGACTGTTCATCATCGACGGCGCCAAGGCGCTGTCGAAGGCGATTCGCAACACCTTCGGC
CGCGACACCCCGATCCAGCGCTGCCAGGTCCACAAGGCCCGCAACATCGCAGAGCGCCTGCCCAAGTCCTTGCAGGCCGGCGTCCGCAAGGCGCTGCGTC
AGGCCTGGGAACTGGACGACGCCGACAAGGCCGAGAAGCTGATCCGCAACCTCGCCCGTCGCCTGGAGCGCGACGCCCCGGGCGTGTCGGCCAGCATCCT
GGAGGGCCTCGACGAGATCCTCACCGTCACCCGCCTCGGTCTGCCAGTCGAACTACGCCGGTCGCTCGCCTGCACCAACATCATCGAGAACATGAACGGA
ACCGTCCGCCGGGTCTGCCGCAACGTCAAACGCTGGCAGGACGCGGCCATGGCGCTGCGCTGGACCGCCGCTGCCATGCTCGAGGCCGCCAAGGGCTTCC
GCCGCCTCAAGGCCCACAAGCAACTCCCGAGCCTGCGCCGAGCCCTGGCGGCCCACCAGGACAGGAACGCGATCAACCACGACCTTGAACAGCAGGCGGT
CGCCGCATAGCATCGTCAACCAACAGCGCCTGCCGAGCAAATTTCAACACGGCGAGGGACATCCCC
CGGAGCCAGCTTCGATCGTTTCTGCCTGACGGCGGGCCTGGCGACTTTGGCGACGATGATGGATGAGGAGGCGGCCGAGCTGTGCGGCCCGCGCTACGGC
CGGGCTGCTGGGCGAGACGGGTATCGCTGGGGCAAGACCAAGGGGAAGGTCGGCTTCCACGGCGGCAAGGTCGAGATCGATCGTCCTCGCGTTCGTGCTC
GCGACGGCGGCGAGCTGGCGCTGCCGAGCTGGGAGGCGGCGCAGTCGGAAGACCTGCTCGGCAAGTGGGCGCTGAACCTGATGCTGATCAACGTCTCGAC
CCGCAAGTTCGGCCGCGCCGTCCGCCTGCCGGGCGGCGACATCCCGGCGGCCCCCGGGTCGGGAGTGTCGAAGTCGGCGGTGTCGCGGCGGTTCGTGGCG
CTGTCGGCGGAACGCATGAAGGAATGGATGGCCGCCGACTTGTCCGCCCTGGACCTGCTGGCGATCCAGATCGACGGCATCCACATCGAGGAAGACCTGA
TGCTGCTGGCCGCCGTCGGCATCGACGGCATCGGCGACAAGCATCCGCTCGGCGTGATCGAGGGGGCCAGCGAGAACGCCGCCGTGGCCCAGGCGCTGCT
CGACAACCTGGTCGGCCGCGGCCTCGATCCCGCGGTCTGCCGACTGTTCATCATCGACGGCGCCAAGGCGCTGTCGAAGGCGATTCGCAACACCTTCGGC
CGCGACACCCCGATCCAGCGCTGCCAGGTCCACAAGGCCCGCAACATCGCAGAGCGCCTGCCCAAGTCCTTGCAGGCCGGCGTCCGCAAGGCGCTGCGTC
AGGCCTGGGAACTGGACGACGCCGACAAGGCCGAGAAGCTGATCCGCAACCTCGCCCGTCGCCTGGAGCGCGACGCCCCGGGCGTGTCGGCCAGCATCCT
GGAGGGCCTCGACGAGATCCTCACCGTCACCCGCCTCGGTCTGCCAGTCGAACTACGCCGGTCGCTCGCCTGCACCAACATCATCGAGAACATGAACGGA
ACCGTCCGCCGGGTCTGCCGCAACGTCAAACGCTGGCAGGACGCGGCCATGGCGCTGCGCTGGACCGCCGCTGCCATGCTCGAGGCCGCCAAGGGCTTCC
GCCGCCTCAAGGCCCACAAGCAACTCCCGAGCCTGCGCCGAGCCCTGGCGGCCCACCAGGACAGGAACGCGATCAACCACGACCTTGAACAGCAGGCGGT
CGCCGCATAGCATCGTCAACCAACAGCGCCTGCCGAGCAAATTTCAACACGGCGAGGGACATCCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1278 bp | 425 aa | 33 | 1310 | + | No |
Chemistry : DDE
ORF sequence :
MKKATRSAGVVPAAIVDEAWQEVGASFDRFCLTAGLATLATMMDEEAAELCGPRYGRAAGRDGYRWGKTKGKVGFHGGKVEIDRPRVRARDGGELALPSW
EAAQSEDLLGKWALNLMLINVSTRKFGRAVRLPGGDIPAAPGSGVSKSAVSRRFVALSAERMKEWMAADLSALDLLAIQIDGIHIEEDLMLLAAVGIDGI
GDKHPLGVIEGASENAAVAQALLDNLVGRGLDPAVCRLFIIDGAKALSKAIRNTFGRDTPIQRCQVHKARNIAERLPKSLQAGVRKALRQAWELDDADKA
EKLIRNLARRLERDAPGVSASILEGLDEILTVTRLGLPVELRRSLACTNIIENMNGTVRRVCRNVKRWQDAAMALRWTAAAMLEAAKGFRRLKAHKQLPS
LRRALAAHQDRNAINHDLEQQAVAA
EAAQSEDLLGKWALNLMLINVSTRKFGRAVRLPGGDIPAAPGSGVSKSAVSRRFVALSAERMKEWMAADLSALDLLAIQIDGIHIEEDLMLLAAVGIDGI
GDKHPLGVIEGASENAAVAQALLDNLVGRGLDPAVCRLFIIDGAKALSKAIRNTFGRDTPIQRCQVHKARNIAERLPKSLQAGVRKALRQAWELDDADKA
EKLIRNLARRLERDAPGVSASILEGLDEILTVTRLGLPVELRRSLACTNIIENMNGTVRRVCRNVKRWQDAAMALRWTAAAMLEAAKGFRRLKAHKQLPS
LRRALAAHQDRNAINHDLEQQAVAA
Blast result :
Comments
ISApr10 is 55% aa similar to IS931.
Genome in progress : Accession number : NZ_ABHC01000016.
Genome in progress : Accession number : NZ_ABHC01000016.
References
1] ISfinder annotation (2009)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.