ISApr9
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABHC01000016 | ND | Alpha proteobacterium | Alpha proteobacterium BAL199 |
DNA section
IS Length : 1668 bp
Ends
IR Length : 14/15
IRL : CCCACATTCCCCAAGTAATCCGCTGATTTCGCTGTCCTGATGTTGATAAT
IRR : CCGACATTCCCCAAGCGGCGTGCCGACTGACGTGAAGATCGCCTGAATCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATGTATTCAG | CTAAGAGCCG | 0 |
DNA sequence
CCCACATTCCCCAAGTAATCCGCTGATTTCGCTGTCCTGATGTTGATAATTTCTATATGAATCATGGTGTTGACGGCTGGGAGGGGCGGGCTTCATGGAT
CACCCAGAGGGTGCGGGTTCGAAGCGGGCAGATCGGGTCGAGTTCGACCGCCGGGTTCATGTGGAGTTCCGGGGTGCGCAGCTCAGTTCCGACGGTGGTC
TTCTGGTGATGCGCGAGCTGGATGACGCGCTCGGGTTGTCCGATCTGGCGGCAACGGCGCTGCGCGACACCCGGCGCGGCAAGAACACGGTCCATCGTCT
CGACGGGCTTTTCCGGCAATCGGTGTTCGGTCGACTGGCCGGATACGAAGATGTCAACGATGCAGATCGACTGGCGCTTGATCCGGTCATGCGCCAAATC
GTGGGTGGCCGAGCGGTCGATGCGCAAGCGGCTTCGGCTTCGCAGATGGGGCGGTTCGAGACCGAGACACTGGCCCTGGCCGAGAACCGTACCGCGCTGG
CCGACCTGAACGGGCAATGGATCGACCGGTTTCACGACCGCAACGGGTTGAAGTACATCGTGCTGGACATGGACAGCTCGGTCAGCCCCACCCATGGCGA
TCAGGAGGGCGCGGCCTGGAACGGGCATTTCGACTGCACCTGCTACCACCCCAACTTTCTGTTCAACCAGTTCGGCATGCTGGAACGCTGCGCCTTGCGC
AACGGCAACGTCCACAGCGCTGATGGCTGGCGCGACGTTCTCGATCCGGTCATCGCCCGGTATGCCGAGCGCAACATCATGCGGTTCTTCCGGGCGGATG
CCGCTTATGCAATACCCGCGATCTACGAACGTCTGGAAGAAGCGAAGTACTTCTACGCCATCCGGTTGCCTGCCAACAACGTCCTGCGCGCGAAGATCGC
GCATCGGCTGACCAGGCCGGTGGGGCGACCTTCGCAAACCAAAGTCAAGCGGTTCTACGAGGATTTCCATTATCAGGCGCAAAGCTGGGACAAGCCGCGC
CGGGTGATCGCCAAGATCGAATGGCATCCGGGCGAACTGTTCCCCAAGGTCGGCTTCATCGTCACCAACCTGCCGATGGAGCCGGACGAGATCACCCGCT
TTTACAATCGCCGCGGCACCGCCGAGCAGCATATCAAGGAAGGCAAGCATGCCTTTCACTGGACGCGGCTGTCATGCCGGAAGTTCCGCGACAACGAGGT
GCGGCTGCAGTTGCACGCACTGGCCTACAACCTGGCCACCTTCCTGCGCTGCATCGAGCTACCCGAGGCGATGGCCGACTGGTCGCTAACCAGCCTGCAG
CTCAAGCTGATCAAGATCGGGGCACGCGTCGTGCGCCACGCCCGCGCCATTACCTTCCAGTTGGCCGAGGTGGCCGTCACCGGCCCGATGGTGCGCGCCA
TCCTCGCCGCTATCCGCCGATTGCGAGCGCCACCGCTATGCGCATGACCGCGATCCGGACCCAAACTGAACGAAAGCGGCAGGACAGGTCTATCCACTGC
GCTGAAAAACACCGCCCCTGGGCCAGGACACAGCGGCTTCCCGGTCTGATCCGCCCTGTTACAGCAGCCTGCGCGACCCCTGACGCCGCTTGGGGCAAAA
AACGATTGTCCAGAGGTCGGATTCAGGCGATCTTCACGTCAGTCGGCACGCCGCTTGGGGAATGTCGG
CACCCAGAGGGTGCGGGTTCGAAGCGGGCAGATCGGGTCGAGTTCGACCGCCGGGTTCATGTGGAGTTCCGGGGTGCGCAGCTCAGTTCCGACGGTGGTC
TTCTGGTGATGCGCGAGCTGGATGACGCGCTCGGGTTGTCCGATCTGGCGGCAACGGCGCTGCGCGACACCCGGCGCGGCAAGAACACGGTCCATCGTCT
CGACGGGCTTTTCCGGCAATCGGTGTTCGGTCGACTGGCCGGATACGAAGATGTCAACGATGCAGATCGACTGGCGCTTGATCCGGTCATGCGCCAAATC
GTGGGTGGCCGAGCGGTCGATGCGCAAGCGGCTTCGGCTTCGCAGATGGGGCGGTTCGAGACCGAGACACTGGCCCTGGCCGAGAACCGTACCGCGCTGG
CCGACCTGAACGGGCAATGGATCGACCGGTTTCACGACCGCAACGGGTTGAAGTACATCGTGCTGGACATGGACAGCTCGGTCAGCCCCACCCATGGCGA
TCAGGAGGGCGCGGCCTGGAACGGGCATTTCGACTGCACCTGCTACCACCCCAACTTTCTGTTCAACCAGTTCGGCATGCTGGAACGCTGCGCCTTGCGC
AACGGCAACGTCCACAGCGCTGATGGCTGGCGCGACGTTCTCGATCCGGTCATCGCCCGGTATGCCGAGCGCAACATCATGCGGTTCTTCCGGGCGGATG
CCGCTTATGCAATACCCGCGATCTACGAACGTCTGGAAGAAGCGAAGTACTTCTACGCCATCCGGTTGCCTGCCAACAACGTCCTGCGCGCGAAGATCGC
GCATCGGCTGACCAGGCCGGTGGGGCGACCTTCGCAAACCAAAGTCAAGCGGTTCTACGAGGATTTCCATTATCAGGCGCAAAGCTGGGACAAGCCGCGC
CGGGTGATCGCCAAGATCGAATGGCATCCGGGCGAACTGTTCCCCAAGGTCGGCTTCATCGTCACCAACCTGCCGATGGAGCCGGACGAGATCACCCGCT
TTTACAATCGCCGCGGCACCGCCGAGCAGCATATCAAGGAAGGCAAGCATGCCTTTCACTGGACGCGGCTGTCATGCCGGAAGTTCCGCGACAACGAGGT
GCGGCTGCAGTTGCACGCACTGGCCTACAACCTGGCCACCTTCCTGCGCTGCATCGAGCTACCCGAGGCGATGGCCGACTGGTCGCTAACCAGCCTGCAG
CTCAAGCTGATCAAGATCGGGGCACGCGTCGTGCGCCACGCCCGCGCCATTACCTTCCAGTTGGCCGAGGTGGCCGTCACCGGCCCGATGGTGCGCGCCA
TCCTCGCCGCTATCCGCCGATTGCGAGCGCCACCGCTATGCGCATGACCGCGATCCGGACCCAAACTGAACGAAAGCGGCAGGACAGGTCTATCCACTGC
GCTGAAAAACACCGCCCCTGGGCCAGGACACAGCGGCTTCCCGGTCTGATCCGCCCTGTTACAGCAGCCTGCGCGACCCCTGACGCCGCTTGGGGCAAAA
AACGATTGTCCAGAGGTCGGATTCAGGCGATCTTCACGTCAGTCGGCACGCCGCTTGGGGAATGTCGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 95 | 1447 | + | No |
Chemistry : DDE
ORF sequence :
MDHPEGAGSKRADRVEFDRRVHVEFRGAQLSSDGGLLVMRELDDALGLSDLAATALRDTRRGKNTVHRLDGLFRQSVFGRLAGYEDVNDADRLALDPVMR
QIVGGRAVDAQAASASQMGRFETETLALAENRTALADLNGQWIDRFHDRNGLKYIVLDMDSSVSPTHGDQEGAAWNGHFDCTCYHPNFLFNQFGMLERCA
LRNGNVHSADGWRDVLDPVIARYAERNIMRFFRADAAYAIPAIYERLEEAKYFYAIRLPANNVLRAKIAHRLTRPVGRPSQTKVKRFYEDFHYQAQSWDK
PRRVIAKIEWHPGELFPKVGFIVTNLPMEPDEITRFYNRRGTAEQHIKEGKHAFHWTRLSCRKFRDNEVRLQLHALAYNLATFLRCIELPEAMADWSLTS
LQLKLIKIGARVVRHARAITFQLAEVAVTGPMVRAILAAIRRLRAPPLCA
QIVGGRAVDAQAASASQMGRFETETLALAENRTALADLNGQWIDRFHDRNGLKYIVLDMDSSVSPTHGDQEGAAWNGHFDCTCYHPNFLFNQFGMLERCA
LRNGNVHSADGWRDVLDPVIARYAERNIMRFFRADAAYAIPAIYERLEEAKYFYAIRLPANNVLRAKIAHRLTRPVGRPSQTKVKRFYEDFHYQAQSWDK
PRRVIAKIEWHPGELFPKVGFIVTNLPMEPDEITRFYNRRGTAEQHIKEGKHAFHWTRLSCRKFRDNEVRLQLHALAYNLATFLRCIELPEAMADWSLTS
LQLKLIKIGARVVRHARAITFQLAEVAVTGPMVRAILAAIRRLRAPPLCA
Blast result :
Comments
ISApr9 is 95% aa similar to IS1247.
References
1] ISfinder annotation (2009)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.