ISAcma45
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009925 | ND | Acaryochloris marina | Acaryochloris marina MBIC11017 plasmid pREB6 Acaryochloris marina MBIC11017 plasmid pREB3 |
DNA section
IS Length : 1830 bp
Ends
IR Length : 16/17
IRL : GACACTGTTGGCGAAATATTCCGCAATGATCTAAGTCGGCTGAAAATAGC
IRR : GACACTGTTGGCGAATTCCAAGAAGTCACGCTGGTAATGGCTGAAGTATC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGGTGTCAGC | AACCCT | TCAATTACCCC | 6 |
| GGGGTAATTGA | AGGGTT | GCTGACACCAG | 6 |
| ATTGAAGGGTC | AGGGTTGCTGA | 0 | |
| TCAGCGACCCT | AGGGTCGCTGA | 0 | |
| ATTGAAGGGTT | AACCCTTCAAT | 0 |
DNA sequence
GACACTGTTGGCGAAATATTCCGCAATGATCTAAGTCGGCTGAAAATAGCTTCTAACACTTGATGCAGTAAGCCTTTTGTGGATTGAGGTATGGTACTGC
TAAAACTCAAACTCAATCACGCTCACTCTGGAGGCTCATTGTTATGTCTATGCGCCCGACAGACTTGTTGGACATCCCCAGTGAAACCATTGAAGTAGCT
AGGGCTGCCTTTCCTGATGGCAATCTGTATATGCAACTACGTGATGAACTTGGCATTATCTATCACGATCACGATTTTGCTGATCTGTTTCCGAAGAAAG
GACAACCAGCTCTATCCCCCTGGCAGCTTGTGCTAGTTTGCATCATGCAATTTCTTGAGAATCTTTCAGACCGTCAAGCGGCTGATGCCGTTCGAGCCCG
GATAGATTGGAAATATGCCCTGAGCCTACCGCTGAGAGACTCTGGATTTAATTATTCTGTTTTGAGTGAATTTCGCAAGCGTCTGATCGCGGGTGACAAG
GAACAACAGCTATTTGATAGCTTCCTTGAGCACCTTCAAGCAAAAGGGTTCCTTAAAGAACACCATCAACAACGAACGGATGCGACCCATATCCTAGCGT
CGATCCGAACCCTCAATCGGTTGGAGTTATTTGGTGAAACCTTTCGGGCTGCTCTCAATAGTTTGGTTGTCGCAGATCCACAGTGGTTAAGCGAACACAT
GCACGATGACTGGTTTGATCGCTATGGTCGACGAATAGAGAATTATCGCTTGCCCAAACCCGATAGCGAACGCAAAGCTTTGGGCAGTACTATCGGTCAA
GATGGTTTGACACTGCTTGACGCCATATATGCCCCTAGTTCACCACCGTGGTTAAAGCATCTACCTGCAGTGGAAACTCTGCGACAAGTCTGGCTCCAGC
GATTCTACCCGCCCAATGCAGACGGCACAGTCGAATGGCGAAAAGTGAAGGATATGCCCCCTTCTGATTCATCCATTCATTCTCCTTACGATGTCGAAGC
CCGCTATAGCAATAAAAGAAGTATGGATTGGGTGGGCTATAAAGTTCATTTAACAGAAGTGTGTGATCCTGAAAGTCCACGTCTCATCACTCATGTGCAC
ACCACCAGTGCAACGGTTCCAGATGATCAAGTTGTTGAACCCATTCACCTGGCTCTGGCTAAAAAACAGTTGTTGCCTAAAGAGCATTTGTTAGATGGGG
GTTACCTCTCGGCAGAGCATTTGGTGAATAGCAAAGCAGAATATGACATGGATGTTATTGGTCCAGTGCGTCAAAATCATAGTTGGCAAGCAAAGGCAGG
AAACGGATTTGATTCGAGCTTCTTCCTCATCAGTTGGGACCAACAGAAGGTTGTCTGTCCTCAAGGCCACTTCAGTACGAAATGGTTGCCTGGAAAGGAT
ATTCACGGAAAGGATGTCATTCAAGCAAGGTTCCAGGGGACCACTTGCCGAAGTTGTCCAGTGCGATCTCAATGTACGAAATCAAAGACCCAGCCAAGAG
AGTTGACGTTCCGTCCCCGTGAGTTACATCAAGCCCTTAATGAACGACGTCAGGTACAACGAACTACTGAGTTCAAGGAAAAATATAGCCTGCGGGCTGG
TGTTGAGAGTACCCATTCACAGGGAATACGGCGATTTGGCATGCGCCAATCAAGGTATATCGGGTTAGCGAAGAGCCATCTACAGAATGTTTTCTGTGCC
ATTGCTCTCAATTTTGTCCGCTTAGACGCTTGGTTTAATGATGTTCCACTAGCAAAAACTCGTGTATCTCTTTTCAAGAGGATACTTCAGCCATTACCAG
CGTGACTTCTTGGAATTCGCCAACAGTGTC
TAAAACTCAAACTCAATCACGCTCACTCTGGAGGCTCATTGTTATGTCTATGCGCCCGACAGACTTGTTGGACATCCCCAGTGAAACCATTGAAGTAGCT
AGGGCTGCCTTTCCTGATGGCAATCTGTATATGCAACTACGTGATGAACTTGGCATTATCTATCACGATCACGATTTTGCTGATCTGTTTCCGAAGAAAG
GACAACCAGCTCTATCCCCCTGGCAGCTTGTGCTAGTTTGCATCATGCAATTTCTTGAGAATCTTTCAGACCGTCAAGCGGCTGATGCCGTTCGAGCCCG
GATAGATTGGAAATATGCCCTGAGCCTACCGCTGAGAGACTCTGGATTTAATTATTCTGTTTTGAGTGAATTTCGCAAGCGTCTGATCGCGGGTGACAAG
GAACAACAGCTATTTGATAGCTTCCTTGAGCACCTTCAAGCAAAAGGGTTCCTTAAAGAACACCATCAACAACGAACGGATGCGACCCATATCCTAGCGT
CGATCCGAACCCTCAATCGGTTGGAGTTATTTGGTGAAACCTTTCGGGCTGCTCTCAATAGTTTGGTTGTCGCAGATCCACAGTGGTTAAGCGAACACAT
GCACGATGACTGGTTTGATCGCTATGGTCGACGAATAGAGAATTATCGCTTGCCCAAACCCGATAGCGAACGCAAAGCTTTGGGCAGTACTATCGGTCAA
GATGGTTTGACACTGCTTGACGCCATATATGCCCCTAGTTCACCACCGTGGTTAAAGCATCTACCTGCAGTGGAAACTCTGCGACAAGTCTGGCTCCAGC
GATTCTACCCGCCCAATGCAGACGGCACAGTCGAATGGCGAAAAGTGAAGGATATGCCCCCTTCTGATTCATCCATTCATTCTCCTTACGATGTCGAAGC
CCGCTATAGCAATAAAAGAAGTATGGATTGGGTGGGCTATAAAGTTCATTTAACAGAAGTGTGTGATCCTGAAAGTCCACGTCTCATCACTCATGTGCAC
ACCACCAGTGCAACGGTTCCAGATGATCAAGTTGTTGAACCCATTCACCTGGCTCTGGCTAAAAAACAGTTGTTGCCTAAAGAGCATTTGTTAGATGGGG
GTTACCTCTCGGCAGAGCATTTGGTGAATAGCAAAGCAGAATATGACATGGATGTTATTGGTCCAGTGCGTCAAAATCATAGTTGGCAAGCAAAGGCAGG
AAACGGATTTGATTCGAGCTTCTTCCTCATCAGTTGGGACCAACAGAAGGTTGTCTGTCCTCAAGGCCACTTCAGTACGAAATGGTTGCCTGGAAAGGAT
ATTCACGGAAAGGATGTCATTCAAGCAAGGTTCCAGGGGACCACTTGCCGAAGTTGTCCAGTGCGATCTCAATGTACGAAATCAAAGACCCAGCCAAGAG
AGTTGACGTTCCGTCCCCGTGAGTTACATCAAGCCCTTAATGAACGACGTCAGGTACAACGAACTACTGAGTTCAAGGAAAAATATAGCCTGCGGGCTGG
TGTTGAGAGTACCCATTCACAGGGAATACGGCGATTTGGCATGCGCCAATCAAGGTATATCGGGTTAGCGAAGAGCCATCTACAGAATGTTTTCTGTGCC
ATTGCTCTCAATTTTGTCCGCTTAGACGCTTGGTTTAATGATGTTCCACTAGCAAAAACTCGTGTATCTCTTTTCAAGAGGATACTTCAGCCATTACCAG
CGTGACTTCTTGGAATTCGCCAACAGTGTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1662 bp | 553 aa | 144 | 1805 | + | No |
Chemistry : DDE
ORF sequence :
MSMRPTDLLDIPSETIEVARAAFPDGNLYMQLRDELGIIYHDHDFADLFPKKGQPALSPWQLVLVCIMQFLENLSDRQAADAVRARIDWKYALSLPLRDS
GFNYSVLSEFRKRLIAGDKEQQLFDSFLEHLQAKGFLKEHHQQRTDATHILASIRTLNRLELFGETFRAALNSLVVADPQWLSEHMHDDWFDRYGRRIEN
YRLPKPDSERKALGSTIGQDGLTLLDAIYAPSSPPWLKHLPAVETLRQVWLQRFYPPNADGTVEWRKVKDMPPSDSSIHSPYDVEARYSNKRSMDWVGYK
VHLTEVCDPESPRLITHVHTTSATVPDDQVVEPIHLALAKKQLLPKEHLLDGGYLSAEHLVNSKAEYDMDVIGPVRQNHSWQAKAGNGFDSSFFLISWDQ
QKVVCPQGHFSTKWLPGKDIHGKDVIQARFQGTTCRSCPVRSQCTKSKTQPRELTFRPRELHQALNERRQVQRTTEFKEKYSLRAGVESTHSQGIRRFGM
RQSRYIGLAKSHLQNVFCAIALNFVRLDAWFNDVPLAKTRVSLFKRILQPLPA
GFNYSVLSEFRKRLIAGDKEQQLFDSFLEHLQAKGFLKEHHQQRTDATHILASIRTLNRLELFGETFRAALNSLVVADPQWLSEHMHDDWFDRYGRRIEN
YRLPKPDSERKALGSTIGQDGLTLLDAIYAPSSPPWLKHLPAVETLRQVWLQRFYPPNADGTVEWRKVKDMPPSDSSIHSPYDVEARYSNKRSMDWVGYK
VHLTEVCDPESPRLITHVHTTSATVPDDQVVEPIHLALAKKQLLPKEHLLDGGYLSAEHLVNSKAEYDMDVIGPVRQNHSWQAKAGNGFDSSFFLISWDQ
QKVVCPQGHFSTKWLPGKDIHGKDVIQARFQGTTCRSCPVRSQCTKSKTQPRELTFRPRELHQALNERRQVQRTTEFKEKYSLRAGVESTHSQGIRRFGM
RQSRYIGLAKSHLQNVFCAIALNFVRLDAWFNDVPLAKTRVSLFKRILQPLPA
Blast result :
Comments
ISAcma45 is 49% aa similar to ISPlu14.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)
2] ISfinder annotation (2009)