ISApr8
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Alpha proteobacterium | Alpha proteobacterium BAL199 |
DNA section
IS Length : 1667 bp
Ends
IR Length : 13/17
IRL : CCGGATTTCCCAGATGGCGCTGCGTTTTCCTGACGGTGGCGGTCAAATAT
IRR : CCGACATTTCCCATTTGAGCGGCCGAACCGCCCCTGTTTGATGGCAGGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCCAGGCGTGTTTCAAC | TTATTATATTCTTCT | 0 | |
| TCTGCTGCTGCACCTTAA | TTCAATGTCGACTAC | 0 |
DNA sequence
CCGGATTTCCCAGATGGCGCTGCGTTTTCCTGACGGTGGCGGTCAAATATGATATCAAAATCAATGCAGTACTGACGATTTGAGGGGCTGGGTATGGAGA
TGGCGGCGGGTGAAACGGAATCGGCCGATTTGCGGGTCGCTTTTGACCGCCGCCTCAAGCTGGAATTCCACGGCTCCAGGATCACCTCCGATGCCGGACT
GCTCGCCTTCCGGGAACTCGATGATGCTCTCGGTCTGACCGAGATGGCCGGGCAGGTGTTGGCCGACAGCCGGACCGGCAAGAACAACCGCCACACCCTT
ACGGCCCAGTTCCGGCAGTCGGTATTCGGTCGGCTTGCCGGGTACGAAGATGTCAACGACGCCGACCGGCTCGGCCATGATCCGGCGATGCGCTGGATCG
TCGGCGGCAGGGCTGTGACCAAGGAGGCCGCGTCCACCAGCCAGATGGGGCGGTTCGAAACCGAGGTGCTGACTGGCAAGGCGAACCTCACCGCCTTGGC
CGACCTGTCAGGAAAATGGATCGACGCGGTTCATGCCCGCCGTCCCACCAACGTCGTGGTGCTGGACATGGACAGCAGCGTCAGCCCGACCCATGGTGAG
CAGGAAGGCACCGCCTACAACGGCCATTTCGGCTGCACCTGCTACCATCCGCTGTTCGTGTTCAACCAGTTCGGCGAGCTGGAGCGAACCGCGCTGCGCT
CTGGGAACGTCCACAGCGCCGATGATTGGCGCTCGGTGCTGGAGCCGGTGGTGGCGCGGTATCGGGACAGGACCAGGCGGCGGTTCTTCCGGGGCGATGC
CGCCTTCGCCCTGCCTGAGTTGTACGACTACCTGGAAGCCGAGGGCTACAAGTACACCATCCGCCTCAAGGCCAACACGGTCCTCCAGGGCCACATCGCC
CATCTGCTCAAACGCCCGGTCGGTCGTCCTCCGAAATACGTCCAGCGGTTCTACGCCAGCTTCAGCTATCAGGCCAAGTCATGGAGCCGGAAGCGCCGCG
TGGTCGCCAAGGTCGAATGGTATTCCGGCGAACTGTATCCACGTGTCGGCTTCATTGTCACCAATCTGACCCGCCCCGCCGCCCGCGTGACCGCCTTCTA
CAACCATCGTGGCACGGCGGAGCAGTACATCAAGGAGGGCAAGAACGCGGTGAAGTGGACCCGGCTGTCCTGCCGGACGATGAAGGCCAACGCGGTGCGC
CTTCAGCTTCACGCCCTGGCCTACAACCTCGCCAACTTCCTGCGCACCCTGGCCCTGCCGGACGAAATGGAAAGCTGGTCGCTCACCACTATCCGCGAGA
AGGTGGTGAAGATCGGTGCGAAGATCATCGCCCACGCCCGCTACAGTGTCTTCCAGATGGCCGAGGTCGCGGTGCCGCGTGACCTGTTCCGACGCATCCT
CGACATGATCGACAATCTGCGAGCACGAGAACCGGCGCCATGCTGACAGCAGGGTGGATCCGCACAAGGCAAGCGACAGGCGAAGTGCGCTCGGGATCCA
GCGAAATGAGCCAAAATCGCGCTGATGAAGCCAGCCATGGAGGTCGGGTTGACGATCATGGTGCGGCCGAGGCGGCCACTGTGACGATCCGCCTTCTGGC
AGGCCCGGACGTGGGTTATCCTGCCATCAAACAGGGGCGGTTCGGCCGCTCAAATGGGAAATGTCGG
TGGCGGCGGGTGAAACGGAATCGGCCGATTTGCGGGTCGCTTTTGACCGCCGCCTCAAGCTGGAATTCCACGGCTCCAGGATCACCTCCGATGCCGGACT
GCTCGCCTTCCGGGAACTCGATGATGCTCTCGGTCTGACCGAGATGGCCGGGCAGGTGTTGGCCGACAGCCGGACCGGCAAGAACAACCGCCACACCCTT
ACGGCCCAGTTCCGGCAGTCGGTATTCGGTCGGCTTGCCGGGTACGAAGATGTCAACGACGCCGACCGGCTCGGCCATGATCCGGCGATGCGCTGGATCG
TCGGCGGCAGGGCTGTGACCAAGGAGGCCGCGTCCACCAGCCAGATGGGGCGGTTCGAAACCGAGGTGCTGACTGGCAAGGCGAACCTCACCGCCTTGGC
CGACCTGTCAGGAAAATGGATCGACGCGGTTCATGCCCGCCGTCCCACCAACGTCGTGGTGCTGGACATGGACAGCAGCGTCAGCCCGACCCATGGTGAG
CAGGAAGGCACCGCCTACAACGGCCATTTCGGCTGCACCTGCTACCATCCGCTGTTCGTGTTCAACCAGTTCGGCGAGCTGGAGCGAACCGCGCTGCGCT
CTGGGAACGTCCACAGCGCCGATGATTGGCGCTCGGTGCTGGAGCCGGTGGTGGCGCGGTATCGGGACAGGACCAGGCGGCGGTTCTTCCGGGGCGATGC
CGCCTTCGCCCTGCCTGAGTTGTACGACTACCTGGAAGCCGAGGGCTACAAGTACACCATCCGCCTCAAGGCCAACACGGTCCTCCAGGGCCACATCGCC
CATCTGCTCAAACGCCCGGTCGGTCGTCCTCCGAAATACGTCCAGCGGTTCTACGCCAGCTTCAGCTATCAGGCCAAGTCATGGAGCCGGAAGCGCCGCG
TGGTCGCCAAGGTCGAATGGTATTCCGGCGAACTGTATCCACGTGTCGGCTTCATTGTCACCAATCTGACCCGCCCCGCCGCCCGCGTGACCGCCTTCTA
CAACCATCGTGGCACGGCGGAGCAGTACATCAAGGAGGGCAAGAACGCGGTGAAGTGGACCCGGCTGTCCTGCCGGACGATGAAGGCCAACGCGGTGCGC
CTTCAGCTTCACGCCCTGGCCTACAACCTCGCCAACTTCCTGCGCACCCTGGCCCTGCCGGACGAAATGGAAAGCTGGTCGCTCACCACTATCCGCGAGA
AGGTGGTGAAGATCGGTGCGAAGATCATCGCCCACGCCCGCTACAGTGTCTTCCAGATGGCCGAGGTCGCGGTGCCGCGTGACCTGTTCCGACGCATCCT
CGACATGATCGACAATCTGCGAGCACGAGAACCGGCGCCATGCTGACAGCAGGGTGGATCCGCACAAGGCAAGCGACAGGCGAAGTGCGCTCGGGATCCA
GCGAAATGAGCCAAAATCGCGCTGATGAAGCCAGCCATGGAGGTCGGGTTGACGATCATGGTGCGGCCGAGGCGGCCACTGTGACGATCCGCCTTCTGGC
AGGCCCGGACGTGGGTTATCCTGCCATCAAACAGGGGCGGTTCGGCCGCTCAAATGGGAAATGTCGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 94 | 1446 | + | No |
Chemistry : DDE
ORF sequence :
MEMAAGETESADLRVAFDRRLKLEFHGSRITSDAGLLAFRELDDALGLTEMAGQVLADSRTGKNNRHTLTAQFRQSVFGRLAGYEDVNDADRLGHDPAMR
WIVGGRAVTKEAASTSQMGRFETEVLTGKANLTALADLSGKWIDAVHARRPTNVVVLDMDSSVSPTHGEQEGTAYNGHFGCTCYHPLFVFNQFGELERTA
LRSGNVHSADDWRSVLEPVVARYRDRTRRRFFRGDAAFALPELYDYLEAEGYKYTIRLKANTVLQGHIAHLLKRPVGRPPKYVQRFYASFSYQAKSWSRK
RRVVAKVEWYSGELYPRVGFIVTNLTRPAARVTAFYNHRGTAEQYIKEGKNAVKWTRLSCRTMKANAVRLQLHALAYNLANFLRTLALPDEMESWSLTTI
REKVVKIGAKIIAHARYSVFQMAEVAVPRDLFRRILDMIDNLRAREPAPC
WIVGGRAVTKEAASTSQMGRFETEVLTGKANLTALADLSGKWIDAVHARRPTNVVVLDMDSSVSPTHGEQEGTAYNGHFGCTCYHPLFVFNQFGELERTA
LRSGNVHSADDWRSVLEPVVARYRDRTRRRFFRGDAAFALPELYDYLEAEGYKYTIRLKANTVLQGHIAHLLKRPVGRPPKYVQRFYASFSYQAKSWSRK
RRVVAKVEWYSGELYPRVGFIVTNLTRPAARVTAFYNHRGTAEQYIKEGKNAVKWTRLSCRTMKANAVRLQLHALAYNLANFLRTLALPDEMESWSLTTI
REKVVKIGAKIIAHARYSVFQMAEVAVPRDLFRRILDMIDNLRAREPAPC
Blast result :
Comments
ISApr8 is 77% aa similar to ISCARN79.
References
1] ISfinder annotation (2009)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.