ISAar9

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1735 bp

Ends


IR Length : 12/16

IRL : CCCGGGTATTTCATGAAGGCCGGTAGTCATTAACTGACTTAAAAGATGAA
IRR : CCCAGATTTTTCATCAGCTATCTGACGGCCGCCGAAATCCGATACCCAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTAGCCTGAGCTAg/cACCAAACTTC6

DNA sequence

CCCGGGTATTTCATGAAGGCCGGTAGTCATTAACTGACTTAAAAGATGAAAAGGTGATCTGAACTGGGAAAATGGGAGTGTCTAAGCTTCCAAAATACCC
GTTCGAAGGATCACCTTTTCTGTGAACCATTCTACCCAAGTTTTCCCTGCCATCCCGACCCAACTCACCGGCCAAACCTTGGTCTCTCACGCAGGGTTAT
CTGTACTGACCAGTTTCCTGAACGCCTTGGACTTCCGCAGCCTCTGCGAGGACCGGTTCAGCCAGTTCGTGCCAGCCTCCGCGACGCACCGTCCAGGCAA
GATCCTCGGAGCATTGGCTCTATCGTTGGCGGCCGGCGGTGAACAAGCCACAGACATCGACCAGCTACGAGCCGCACCAGACCTCTTCGGTCCTGTAGCG
TCGGATGCCACAATCAGCCGATTCATGGGCCGGATCAAGGAACAACCAGAAGCTTTCTCCTACGGGTTCGCCACCATGACCCGGAGTCTGCGTTCCAAGG
TTTGGGCGGCGGCCGGGCCCCGGAATCCCGCCCGGCTGGCTACGGCAACCAATCCGCTGATTATCGACATCGATGCGTCGCTAGTTCATGTCCATTCCGA
GAAAGAATCCAGCGCAGGAACGTATAAAGGCGGATACGGCTTTTCACCGATGATCGCCATGGCTGACTACGGCAAAGCCCACGGCACCGGAGAAGTCCTC
GCCGTGCAGTTGCGCCCGGGAAACCGGGGCGCAAACTCCGCGAAATCCCATATCGAGGTGCTCGGCCAAGCACTGGCCCAGCTGCCTGATGATTTCTATG
ACGAGCACGGAAACCTGGTCGGTGAGAAGATCCTGGTCCGTACCGATAGTGCTGGGTCCTCCCGGGAGTTCTTGCACCACCTGGATTCGTTGGGGATCCA
GTTCTCCACCTCATATTCGCTGCCGGTCATCAAGGAACGGTTCGTCCGGTGGATCGATGAGAAGAAGTACTGGGAACCAGCACTCACCGCTGACGGGCAG
CAGCGTGATGACGCGTGGGTGATTGACGCGAGCAAAGTCTTGGAGCTGAAGGACTACCCACCAGGAACAAGGATCTATCTGCGCGCTGAGCCGTTGCATC
CCGGTGCGAAAGCAAACTTGTTCGATACCGACGGGAACCGGGTGACAGCGTTCTTGACCAATGCTCCGCGGTTCAACGTGGCGTTCCTCGATGCCCGGCA
CCGTGCCCGTGGCCGGTGTGAGAACAGGATCAAAACGTTGAAGAATGCGGGGTTGGGGAAGCTGCCGTATTGGTCTTTTGCTGCGAACCAGGCGTGGGCT
GACCTGGCAATGTTCGCGGTGAACTTGGTCGCATGGCTGCAACTGGCCGTGCTGCCTGGCGGTCATAAGGCTTCGGTCTGGGATCTTAAGCGATGGAGGT
ACCGGCTGTTCTCGATGGCGGGGAAAATCGTCTCTGGTGGGCGGCAACGCCGGCTGTTAATCTCGGCAAGAGCACCAGAAGCGCGGCTGTTACGCCAACT
GAACGAGGGTGTTGACGTGTTGTTCCAGCGGTGGCGGCACGACCAGCTGGCTACCTGAATCGGTGGTTTCTTTGTTTCTCTGGTTTGAAAGGTCATTCTG
GTCCGGGTCGGTGGAGCCTGGCATTCAGCGTCGATGGTTCAGGCGCTCTTTGTCGTGGGTGGAATCAGAAACGGCCGCCGGGAATCCTGGGTATCGGATT
TCGGCGGCCGTCAGATAGCTGATGAAAAATCTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1437 bp478 aa1221558+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VNHSTQVFPAIPTQLTGQTLVSHAGLSVLTSFLNALDFRSLCEDRFSQFVPASATHRPGKILGALALSLAAGGEQATDIDQLRAAPDLFGPVASDATISR
FMGRIKEQPEAFSYGFATMTRSLRSKVWAAAGPRNPARLATATNPLIIDIDASLVHVHSEKESSAGTYKGGYGFSPMIAMADYGKAHGTGEVLAVQLRPG
NRGANSAKSHIEVLGQALAQLPDDFYDEHGNLVGEKILVRTDSAGSSREFLHHLDSLGIQFSTSYSLPVIKERFVRWIDEKKYWEPALTADGQQRDDAWV
IDASKVLELKDYPPGTRIYLRAEPLHPGAKANLFDTDGNRVTAFLTNAPRFNVAFLDARHRARGRCENRIKTLKNAGLGKLPYWSFAANQAWADLAMFAV
NLVAWLQLAVLPGGHKASVWDLKRWRYRLFSMAGKIVSGGRQRRLLISARAPEARLLRQLNEGVDVLFQRWRHDQLAT

 

Blast result :
Comments
ISAar9 is 95% aa similar to ISAar8.
References
1] ISfinder annotation (2009).