ISAar8

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1738 bp

Ends


IR Length : 14/18

IRL : CCCGGGTATTTCATGAAGGCCGGTAGTCATTAACTGACTTAAAAGATGAA
IRR : CCCAGATTTTTCATGAGGTCTCTGACGGTCATCGAAATCCACTACCCAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGGCTGCGCGCTAGGCGAGGTGGA4
CCGTACATTTCTAGAGCCTATCGG4

DNA sequence

CCCGGGTATTTCATGAAGGCCGGTAGTCATTAACTGACTTAAAAGATGAAAAGGTGACCTGAACTGGGAAAATGGGAGTGTCTAAGCTTCCAAAATACCC
GTTCAAAGGATCACCTTTTCTGTGAACCATTCTACCCACGTTTTCCCTGCCATCCCGACCCAACTCACCGGCCAGTCCCTGGTCTCCCATGCAGGGTTGT
CTGTCCTGACCAGCTTCCTGAACGCCTTGGACTTCCGCAGGCTCTGCGAAGACAGGTTCAGCCAATTCGTGCCCGCCACCGCAACGCACCGGCCAGGCAA
GATCCTCGGCGCCCTGACTCTGTCCTTGGCAGCCGGCGGCGAGCAAGCCACAGATATTGACCAGCTACGAGCCGCACCAGATCTCTTTGGCTCCGTAGCG
TCGGATGCCACGGTCAGCCGGTTCATGGGCCGGATCAAAGAACAGCCAGAAGCTTTCTCCTACGGGTTCGCCACCATGACCCGCAGCCTGCGCTCCAAAG
TCTGGAATGCGGCCGGGCCGCGGAATCCAGCCCGGCTGGCTACGGCAGCCAATCCGCTGATTATCGACCTCGATGCCTCGTTGGTTCATGTCCATTCCGA
GAAAGAATCCAGCGCTGGGACGTATAAAGGTGGGTACGGTTTTTCACCGATGATCGCCATGGCCGACTACGGCAAAGCCAACGGCACCGGTGAAGTCCTC
GCCGTGCACCTGCGCCCGGGAAACAGGGGCGCGAACTCCGCAAAATCCCATATCGAGGTACTCACCCAAGCGCTGGCCCAGCTGCCTGACGATTTCTATG
ACGAGCACGGGAACCTGCACGGTGAGAAGATCCTGGTCCGTACCGACAGTGCTGGGTCGTCCAGGGAGTTCTTGCACCACCTGGATTCGTTGGGGCTCCA
GTTCTCCACGTCGTATTCGCTGCCGGTGCTCAAGGAACGCTTCATCCGCTGGATCGATGAGAAGAAGTACTGGGAACCAGCCCTGGACGCTAACGGAGAT
CAGCGTGATGATGCGTGGGTGATTGATGCAACGAAGGTCTTGGAGTTGAGGCAATACCCGCCTGGAACTCGGATTTACCTGCGTGCTGAGCCGTTGCATC
CCGGGGCGAAAGCGAACTTGTTCGATACGGATGGCAATCGGGTGACCGCGTTTCTCACGAATGCTCCGCGGTTCAACGTGGCGTTCCTTGATGCTCGGCA
TCGTGCCCGTGGCCGGTGCGAGAACAGGATTAAAACGCTCAAGAGCACGGGGTTGGGCAAGCTGCCGTATTGGTCTTTTGCTGCGAACCAGGCGTGGGCT
GACCTGGCAATGTTCGCCTTGAACTTGGTCGCATGGCTGCAGTTGGCGGTGCTGCCTGGTGGTCATGAAGCTTCGGTGTGGGATTTGAAGCGGTGGCGGT
ACCGGCTGTTTTCGATGGCTGGGAAAATCGTCTCTGGTGGCCGGCAGCGCCGGCTGTTGATCCCGGTGAGAGCACCAGAAGCGCAGTTGCTTTGCCAGTT
GCAGGAAGGTATTGGTGTGTTCTTCCAGCGGTGGCGGCGCGGTGAGCTGGCTGCTTGAATTGGCGGTTGTCCTGTTGTTTCTTTGGTATTGAAAGATCAT
TTCAGTCCAGGTCGGTGGAGCCTGGCACCCAGCGCTGGTGTTTCGGCGCTCTTTGGCGTGGGCGGAATCAGAAGCGGCCACCGCGAATCCTGGGTAGTGG
ATTTCGATGACCGTCAGAGACCTCATGAAAAATCTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1437 bp478 aa1221558+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VNHSTHVFPAIPTQLTGQSLVSHAGLSVLTSFLNALDFRRLCEDRFSQFVPATATHRPGKILGALTLSLAAGGEQATDIDQLRAAPDLFGSVASDATVSR
FMGRIKEQPEAFSYGFATMTRSLRSKVWNAAGPRNPARLATAANPLIIDLDASLVHVHSEKESSAGTYKGGYGFSPMIAMADYGKANGTGEVLAVHLRPG
NRGANSAKSHIEVLTQALAQLPDDFYDEHGNLHGEKILVRTDSAGSSREFLHHLDSLGLQFSTSYSLPVLKERFIRWIDEKKYWEPALDANGDQRDDAWV
IDATKVLELRQYPPGTRIYLRAEPLHPGAKANLFDTDGNRVTAFLTNAPRFNVAFLDARHRARGRCENRIKTLKSTGLGKLPYWSFAANQAWADLAMFAL
NLVAWLQLAVLPGGHEASVWDLKRWRYRLFSMAGKIVSGGRQRRLLIPVRAPEAQLLCQLQEGIGVFFQRWRRGELAA

 

Blast result :
Comments
ISAar8 is 56% aa similar to IS1676.
References
1] ISfinder annotation (2009).