ISGka1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006510 | ND | Geobacillus kaustophilus | Geobacillus kaustophilus HTA426 |
DNA section
IS Length : 1537 bp
Ends
IR Length : 12/15
IRL : GGCCGGTGAAAAAGTACACCCTGAGGCAGGGATTTAGGGGGCTTATGTCG
IRR : GGCCGGTGAATTAATGGGGCATAGACTTCCCACATGTCGAATTTTGGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTCTAAAT | TTATAGAA | TTTTTATTAA | 8 |
DNA sequence
GGCCGGTGAAAAAGTACACCCTGAGGCAGGGATTTAGGGGGCTTATGTCGAAAAAGGAAGAAAAATCGTTGGAATGGAGCGTGAGCGGATCATGAAAGCC
CCCAAAAACCCTTCGACTCAGCCTCGTCTGTTTCAAGTCATCGACATGGAAGAACTGGTTCCTCCACATCATATCTTGCGCCAAATCAACGAAGCGGTTG
ACTTTTCCGTCATTCACGATTGGGTGGCTCCCCTGTACACGGAAAAAACGGGTCGCCCGGCGGCGGATCCGGAACGGCTGCTTCGCCTAATGCTGCTCTC
GTATTTGTTCGACCACTCTGAGCGGGAGTTGTATGAGATCCTCCCCATGCATGCCGGATACTTGTGGTTTTGCGGTCTCGACTTTGAATCCGTGCTCCAT
CCGGATCCTCATCACCCCACACTGCCGGATCGAACGACGCTCGTCAAAACACGGAAACGCTGGCGCCAACATGGAATCTTTGACCGGCTGATGACCTATG
TGGTGGATCAATGCATCGCGGCGGGGTTGGTCTCGCCGGATGTCCATGCGGCGGCTGACGGCACCCAAGTGCGGGCGAATGCCTCGATCCACAGCTTGCG
GGAGGTCAAGCTCGCTCCGGTGGAGACGTTGGAAGACTATCTGGCCCGCACTGCCCGGGAAGATGAACAGACCGAGGCCCGGGATCCGGATGACGACCCA
CCCTCTCCGTCTCCAAAATCAGGGGAACGCGTCCATGCCGAAGAACGAGGAAACTTCCGTGGAATCAGGTTTTCCAACCAAACCCATCGAAGCGTGACGG
ATCCGGATGCCCGGTTGTACAAGAAAGGCAAAGGGCAGGAAGCGTATCCTCGGTATCTGGTGCACGACGTCATCGATGTCCAGTCGCGCGTGATTTTATC
CAGACGGGCCAGCCTCGCCACTGGAACGGCGGAACGGGAGACGAGTTTGGAGCAGCTGGCTTCGATTCAGTTTCGCCACCCGTCGATTACGATTCGGACC
TTGTCTGCGGACAAAGCGTATGGCACCACCGAGTATCTGGAAGCGCTCTTCGTTCAAGGCATCACACCGCTCGTGCCGTTGCGCCGCAAGGAGATGGAGG
AGATTCCAACCTGGAAGCGCCGGGCGAAGGATCCCGCTCAGGAAGCAAAGCGCCAGGCGAAAGTCCGAGACGTTCAGATTCGCAATCAAGCGAGGCTCAT
TCAGCAACAGGGCGGCTATCGATCCATTCAAGCCCTTCGCACGCGTTGTGAGCATGTGTTCGCCGAAGGGAAGGAATGTCACGGGCTGGACCGGGCCCGA
AGCCGGGGCCTTTACGCCATGGAAGAACAGGCGCTGTTGACCGCCGTCGTGCAAAATCTGAAGCGATTGTGCCGGTTTCGAAAAAAACGAGGGGGGACCG
GCTCTTTGGCGTGCGCAAAACCGGAATTGGGAGTAGGAAGTCCTGCTCGTCTTCCCATCCTTTGGCGCCAAACGGCGGGGAGAATGGCCTCCAAAATTCG
ACATGTGGGAAGTCTATGCCCCATTAATTCACCGGCC
CCCAAAAACCCTTCGACTCAGCCTCGTCTGTTTCAAGTCATCGACATGGAAGAACTGGTTCCTCCACATCATATCTTGCGCCAAATCAACGAAGCGGTTG
ACTTTTCCGTCATTCACGATTGGGTGGCTCCCCTGTACACGGAAAAAACGGGTCGCCCGGCGGCGGATCCGGAACGGCTGCTTCGCCTAATGCTGCTCTC
GTATTTGTTCGACCACTCTGAGCGGGAGTTGTATGAGATCCTCCCCATGCATGCCGGATACTTGTGGTTTTGCGGTCTCGACTTTGAATCCGTGCTCCAT
CCGGATCCTCATCACCCCACACTGCCGGATCGAACGACGCTCGTCAAAACACGGAAACGCTGGCGCCAACATGGAATCTTTGACCGGCTGATGACCTATG
TGGTGGATCAATGCATCGCGGCGGGGTTGGTCTCGCCGGATGTCCATGCGGCGGCTGACGGCACCCAAGTGCGGGCGAATGCCTCGATCCACAGCTTGCG
GGAGGTCAAGCTCGCTCCGGTGGAGACGTTGGAAGACTATCTGGCCCGCACTGCCCGGGAAGATGAACAGACCGAGGCCCGGGATCCGGATGACGACCCA
CCCTCTCCGTCTCCAAAATCAGGGGAACGCGTCCATGCCGAAGAACGAGGAAACTTCCGTGGAATCAGGTTTTCCAACCAAACCCATCGAAGCGTGACGG
ATCCGGATGCCCGGTTGTACAAGAAAGGCAAAGGGCAGGAAGCGTATCCTCGGTATCTGGTGCACGACGTCATCGATGTCCAGTCGCGCGTGATTTTATC
CAGACGGGCCAGCCTCGCCACTGGAACGGCGGAACGGGAGACGAGTTTGGAGCAGCTGGCTTCGATTCAGTTTCGCCACCCGTCGATTACGATTCGGACC
TTGTCTGCGGACAAAGCGTATGGCACCACCGAGTATCTGGAAGCGCTCTTCGTTCAAGGCATCACACCGCTCGTGCCGTTGCGCCGCAAGGAGATGGAGG
AGATTCCAACCTGGAAGCGCCGGGCGAAGGATCCCGCTCAGGAAGCAAAGCGCCAGGCGAAAGTCCGAGACGTTCAGATTCGCAATCAAGCGAGGCTCAT
TCAGCAACAGGGCGGCTATCGATCCATTCAAGCCCTTCGCACGCGTTGTGAGCATGTGTTCGCCGAAGGGAAGGAATGTCACGGGCTGGACCGGGCCCGA
AGCCGGGGCCTTTACGCCATGGAAGAACAGGCGCTGTTGACCGCCGTCGTGCAAAATCTGAAGCGATTGTGCCGGTTTCGAAAAAAACGAGGGGGGACCG
GCTCTTTGGCGTGCGCAAAACCGGAATTGGGAGTAGGAAGTCCTGCTCGTCTTCCCATCCTTTGGCGCCAAACGGCGGGGAGAATGGCCTCCAAAATTCG
ACATGTGGGAAGTCTATGCCCCATTAATTCACCGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1464 bp | 489 aa | 74 | 1537 | + | No |
Chemistry : DDE
ORF sequence :
MERERIMKAPKNPSTQPRLFQVIDMEELVPPHHILRQINEAVDFSVIHDWVAPLYTEKTGRPAADPERLLRLMLLSYLFDHSERELYEILPMHAGYLWFC
GLDFESVLHPDPHHPTLPDRTTLVKTRKRWRQHGIFDRLMTYVVDQCIAAGLVSPDVHAAADGTQVRANASIHSLREVKLAPVETLEDYLARTAREDEQT
EARDPDDDPPSPSPKSGERVHAEERGNFRGIRFSNQTHRSVTDPDARLYKKGKGQEAYPRYLVHDVIDVQSRVILSRRASLATGTAERETSLEQLASIQF
RHPSITIRTLSADKAYGTTEYLEALFVQGITPLVPLRRKEMEEIPTWKRRAKDPAQEAKRQAKVRDVQIRNQARLIQQQGGYRSIQALRTRCEHVFAEGK
ECHGLDRARSRGLYAMEEQALLTAVVQNLKRLCRFRKKRGGTGSLACAKPELGVGSPARLPILWRQTAGRMASKIRHVGSLCPINSPAL
GLDFESVLHPDPHHPTLPDRTTLVKTRKRWRQHGIFDRLMTYVVDQCIAAGLVSPDVHAAADGTQVRANASIHSLREVKLAPVETLEDYLARTAREDEQT
EARDPDDDPPSPSPKSGERVHAEERGNFRGIRFSNQTHRSVTDPDARLYKKGKGQEAYPRYLVHDVIDVQSRVILSRRASLATGTAERETSLEQLASIQF
RHPSITIRTLSADKAYGTTEYLEALFVQGITPLVPLRRKEMEEIPTWKRRAKDPAQEAKRQAKVRDVQIRNQARLIQQQGGYRSIQALRTRCEHVFAEGK
ECHGLDRARSRGLYAMEEQALLTAVVQNLKRLCRFRKKRGGTGSLACAKPELGVGSPARLPILWRQTAGRMASKIRHVGSLCPINSPAL
Blast result :
Comments
ISGka1 is 43% aa similar to ISBusp2.The Stop codon is in the insertion site.
References
1] ISfinder annotation (2005)
2] Takami,H., Takaki,Y., Chee,G.J., Nishi,S., Shimamura,S., Suzuki,H., Matsui,S. and Uchiyama,I. (2004) Nucleic Acids Res. 32 (21), 6292-6303.
2] Takami,H., Takaki,Y., Chee,G.J., Nishi,S., Shimamura,S., Suzuki,H., Matsui,S. and Uchiyama,I. (2004) Nucleic Acids Res. 32 (21), 6292-6303.