ISGka1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006510 ND Geobacillus kaustophilus
Geobacillus kaustophilus HTA426
DNA section
IS Length : 1537 bp

Ends


IR Length : 12/15

IRL : GGCCGGTGAAAAAGTACACCCTGAGGCAGGGATTTAGGGGGCTTATGTCG
IRR : GGCCGGTGAATTAATGGGGCATAGACTTCCCACATGTCGAATTTTGGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTCTAAATTTATAGAATTTTTATTAA8

DNA sequence

GGCCGGTGAAAAAGTACACCCTGAGGCAGGGATTTAGGGGGCTTATGTCGAAAAAGGAAGAAAAATCGTTGGAATGGAGCGTGAGCGGATCATGAAAGCC
CCCAAAAACCCTTCGACTCAGCCTCGTCTGTTTCAAGTCATCGACATGGAAGAACTGGTTCCTCCACATCATATCTTGCGCCAAATCAACGAAGCGGTTG
ACTTTTCCGTCATTCACGATTGGGTGGCTCCCCTGTACACGGAAAAAACGGGTCGCCCGGCGGCGGATCCGGAACGGCTGCTTCGCCTAATGCTGCTCTC
GTATTTGTTCGACCACTCTGAGCGGGAGTTGTATGAGATCCTCCCCATGCATGCCGGATACTTGTGGTTTTGCGGTCTCGACTTTGAATCCGTGCTCCAT
CCGGATCCTCATCACCCCACACTGCCGGATCGAACGACGCTCGTCAAAACACGGAAACGCTGGCGCCAACATGGAATCTTTGACCGGCTGATGACCTATG
TGGTGGATCAATGCATCGCGGCGGGGTTGGTCTCGCCGGATGTCCATGCGGCGGCTGACGGCACCCAAGTGCGGGCGAATGCCTCGATCCACAGCTTGCG
GGAGGTCAAGCTCGCTCCGGTGGAGACGTTGGAAGACTATCTGGCCCGCACTGCCCGGGAAGATGAACAGACCGAGGCCCGGGATCCGGATGACGACCCA
CCCTCTCCGTCTCCAAAATCAGGGGAACGCGTCCATGCCGAAGAACGAGGAAACTTCCGTGGAATCAGGTTTTCCAACCAAACCCATCGAAGCGTGACGG
ATCCGGATGCCCGGTTGTACAAGAAAGGCAAAGGGCAGGAAGCGTATCCTCGGTATCTGGTGCACGACGTCATCGATGTCCAGTCGCGCGTGATTTTATC
CAGACGGGCCAGCCTCGCCACTGGAACGGCGGAACGGGAGACGAGTTTGGAGCAGCTGGCTTCGATTCAGTTTCGCCACCCGTCGATTACGATTCGGACC
TTGTCTGCGGACAAAGCGTATGGCACCACCGAGTATCTGGAAGCGCTCTTCGTTCAAGGCATCACACCGCTCGTGCCGTTGCGCCGCAAGGAGATGGAGG
AGATTCCAACCTGGAAGCGCCGGGCGAAGGATCCCGCTCAGGAAGCAAAGCGCCAGGCGAAAGTCCGAGACGTTCAGATTCGCAATCAAGCGAGGCTCAT
TCAGCAACAGGGCGGCTATCGATCCATTCAAGCCCTTCGCACGCGTTGTGAGCATGTGTTCGCCGAAGGGAAGGAATGTCACGGGCTGGACCGGGCCCGA
AGCCGGGGCCTTTACGCCATGGAAGAACAGGCGCTGTTGACCGCCGTCGTGCAAAATCTGAAGCGATTGTGCCGGTTTCGAAAAAAACGAGGGGGGACCG
GCTCTTTGGCGTGCGCAAAACCGGAATTGGGAGTAGGAAGTCCTGCTCGTCTTCCCATCCTTTGGCGCCAAACGGCGGGGAGAATGGCCTCCAAAATTCG
ACATGTGGGAAGTCTATGCCCCATTAATTCACCGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1464 bp489 aa741537+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MERERIMKAPKNPSTQPRLFQVIDMEELVPPHHILRQINEAVDFSVIHDWVAPLYTEKTGRPAADPERLLRLMLLSYLFDHSERELYEILPMHAGYLWFC
GLDFESVLHPDPHHPTLPDRTTLVKTRKRWRQHGIFDRLMTYVVDQCIAAGLVSPDVHAAADGTQVRANASIHSLREVKLAPVETLEDYLARTAREDEQT
EARDPDDDPPSPSPKSGERVHAEERGNFRGIRFSNQTHRSVTDPDARLYKKGKGQEAYPRYLVHDVIDVQSRVILSRRASLATGTAERETSLEQLASIQF
RHPSITIRTLSADKAYGTTEYLEALFVQGITPLVPLRRKEMEEIPTWKRRAKDPAQEAKRQAKVRDVQIRNQARLIQQQGGYRSIQALRTRCEHVFAEGK
ECHGLDRARSRGLYAMEEQALLTAVVQNLKRLCRFRKKRGGTGSLACAKPELGVGSPARLPILWRQTAGRMASKIRHVGSLCPINSPAL

 

Blast result :
Comments
ISGka1 is 43% aa similar to ISBusp2.The Stop codon is in the insertion site.
References
1] ISfinder annotation (2005)
2] Takami,H., Takaki,Y., Chee,G.J., Nishi,S., Shimamura,S., Suzuki,H., Matsui,S. and Uchiyama,I. (2004) Nucleic Acids Res. 32 (21), 6292-6303.