ISEfa7
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAAK03000041 | ND | Enterococcus faecium | Enterococcus faecium DO |
DNA section
IS Length : 1536 bp
Ends
IR Length : 15
IRL : CAGACTGTAGACAAAGTCCATTTTATGGATGATATCTACAGTCTTTTCTT
IRR : CAGACTGTAGACAAAAGCTGTTCCAAACTCGTAACTCGAGCTTGGAACAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGACACGATCTTTAGGTCGTGTCT | AAACAGTTGAGACTGTTT | 0 |
DNA sequence
CAGACTGTAGACAAAGTCCATTTTATGGATGATATCTACAGTCTTTTCTTTTATAATAGATTTATGAAAACGAATGCAAGGAGTGATAGCTATGATGTCT
AAAAACAATACGAATGGTAGAAATCAATTTGCGATGCTTACGATTGATGATCTAGTTCCTCAAGATCATCTCGTTCGAAAGATTGATGCCGCGCTTGATT
TTGAATTTATTTATCCAATCGTCGAAGCCACTTACTCCGATTTAGGTCGCCCAAGTATCGATCCAGTGATTCTGATCAAATTGGTGTTTATTCAGTATTT
ATTCGGTATCCGTTCCATGCGACAAACCATTAAGGAAGTCGATACCAATGTCGCTTACCGCTGGTTCTTAGGCTACTCCTTCGAGGAGAAAATCCCCCAT
TTCTCAACTTTTGGAAAGAATTATGTTCGCCGATTTAGAGAAACGACGGTGTTTGAGGATATTTTTGCCTATATTTTAGAACAAGCAGTTAAAGCAGGTT
TTGTAACAGAGGATAATTTGTATCTGGATTCTACCCACATCAAAGCTAACGCCAATAAACATAAGTTTACGAAAGAAATGACCCATGATGAAGCGAAAGC
CTATCAGGATGAATTAGAAGATGAGATCAATCGTCAACGAATAGAGGCTGGAAAACGCCCTTTTACTTTGGACTTAGAAAAGGAAGTGAAGCTGAAAGAA
AGAAAAATAAGTAAAGCTGATCCGGAAAGCGGCTACTACGTCAAAGGCGAACGAGAAAAACAATTTGCTTATTCTGCCCATACTTCATGCGACGACAATG
GATTTATTCTTAGCACAATCATCACTCCTGGAAATATTCATGACAGTCAAGTCGCCTTTCAGCTCGTCAAACAATCGAAGAGACTTTTTCCTGAAATCAA
TTGTGTTGTCGCTGATGCTGGGTATAAGACACCTAAGTTTGTTCACTTTTTGACTCATTTGAACCTTCGACCTTGTTTGCCTTATTCAAGGCCCAAAGGG
AAAAAGGGGCTATTATCAAAAAATGAGTTTCTCTATGACGAGTATTTTGATTGTTATATTTGTCCGCAAGATCAAATGCTCGCTTTTTCAACGGTTACTC
GAGAAGGGTACCGAGAATACAAATCCAATCCAAAAGAATGTGTGAACTGTCCTCTGCTAAACCAATGTACCAAAAGTAAAAATCATCAACGAGTCATCAC
GAGACATGTTTGGGGAGATCTGATGGATGAAGTGGAACATCTTCGCCTAACAGATCTGAATAAATCAATTTACAAAAAACGGAAACAAACGATTGAACGA
ATATTTGCGGATGCAAAAGAAAAGCATGGGATGCGTTGGACCAAGTATCGAGGCTTGGAAAAAGTCGCGACGCATACGATGCTAGTGTTTGCTGCAATGA
ATTTAAAGAAATTAGCCACCTGGCTATGGAAAGGCAAGGAGCCTTTATTTTTTTGTTCAAAAATTCGAAACGAAGTAGATAAAAAGCTGTTCCAAGCTCG
AGTTACGAGTTTGGAACAGCTTTTGTCTACAGTCTG
AAAAACAATACGAATGGTAGAAATCAATTTGCGATGCTTACGATTGATGATCTAGTTCCTCAAGATCATCTCGTTCGAAAGATTGATGCCGCGCTTGATT
TTGAATTTATTTATCCAATCGTCGAAGCCACTTACTCCGATTTAGGTCGCCCAAGTATCGATCCAGTGATTCTGATCAAATTGGTGTTTATTCAGTATTT
ATTCGGTATCCGTTCCATGCGACAAACCATTAAGGAAGTCGATACCAATGTCGCTTACCGCTGGTTCTTAGGCTACTCCTTCGAGGAGAAAATCCCCCAT
TTCTCAACTTTTGGAAAGAATTATGTTCGCCGATTTAGAGAAACGACGGTGTTTGAGGATATTTTTGCCTATATTTTAGAACAAGCAGTTAAAGCAGGTT
TTGTAACAGAGGATAATTTGTATCTGGATTCTACCCACATCAAAGCTAACGCCAATAAACATAAGTTTACGAAAGAAATGACCCATGATGAAGCGAAAGC
CTATCAGGATGAATTAGAAGATGAGATCAATCGTCAACGAATAGAGGCTGGAAAACGCCCTTTTACTTTGGACTTAGAAAAGGAAGTGAAGCTGAAAGAA
AGAAAAATAAGTAAAGCTGATCCGGAAAGCGGCTACTACGTCAAAGGCGAACGAGAAAAACAATTTGCTTATTCTGCCCATACTTCATGCGACGACAATG
GATTTATTCTTAGCACAATCATCACTCCTGGAAATATTCATGACAGTCAAGTCGCCTTTCAGCTCGTCAAACAATCGAAGAGACTTTTTCCTGAAATCAA
TTGTGTTGTCGCTGATGCTGGGTATAAGACACCTAAGTTTGTTCACTTTTTGACTCATTTGAACCTTCGACCTTGTTTGCCTTATTCAAGGCCCAAAGGG
AAAAAGGGGCTATTATCAAAAAATGAGTTTCTCTATGACGAGTATTTTGATTGTTATATTTGTCCGCAAGATCAAATGCTCGCTTTTTCAACGGTTACTC
GAGAAGGGTACCGAGAATACAAATCCAATCCAAAAGAATGTGTGAACTGTCCTCTGCTAAACCAATGTACCAAAAGTAAAAATCATCAACGAGTCATCAC
GAGACATGTTTGGGGAGATCTGATGGATGAAGTGGAACATCTTCGCCTAACAGATCTGAATAAATCAATTTACAAAAAACGGAAACAAACGATTGAACGA
ATATTTGCGGATGCAAAAGAAAAGCATGGGATGCGTTGGACCAAGTATCGAGGCTTGGAAAAAGTCGCGACGCATACGATGCTAGTGTTTGCTGCAATGA
ATTTAAAGAAATTAGCCACCTGGCTATGGAAAGGCAAGGAGCCTTTATTTTTTTGTTCAAAAATTCGAAACGAAGTAGATAAAAAGCTGTTCCAAGCTCG
AGTTACGAGTTTGGAACAGCTTTTGTCTACAGTCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1463 bp | 487 aa | 74 | 1536 | + | No |
Chemistry : DDE
ORF sequence :
MQGVIAMMSKNNTNGRNQFAMLTIDDLVPQDHLVRKIDAALDFEFIYPIVEATYSDLGRPSIDPVILIKLVFIQYLFGIRSMRQTIKEVDTNVAYRWFLG
YSFEEKIPHFSTFGKNYVRRFRETTVFEDIFAYILEQAVKAGFVTEDNLYLDSTHIKANANKHKFTKEMTHDEAKAYQDELEDEINRQRIEAGKRPFTLD
LEKEVKLKERKISKADPESGYYVKGEREKQFAYSAHTSCDDNGFILSTIITPGNIHDSQVAFQLVKQSKRLFPEINCVVADAGYKTPKFVHFLTHLNLRP
CLPYSRPKGKKGLLSKNEFLYDEYFDCYICPQDQMLAFSTVTREGYREYKSNPKECVNCPLLNQCTKSKNHQRVITRHVWGDLMDEVEHLRLTDLNKSIY
KKRKQTIERIFADAKEKHGMRWTKYRGLEKVATHTMLVFAAMNLKKLATWLWKGKEPLFFCSKIRNEVDKKLFQARVTSLEQLLSTV
YSFEEKIPHFSTFGKNYVRRFRETTVFEDIFAYILEQAVKAGFVTEDNLYLDSTHIKANANKHKFTKEMTHDEAKAYQDELEDEINRQRIEAGKRPFTLD
LEKEVKLKERKISKADPESGYYVKGEREKQFAYSAHTSCDDNGFILSTIITPGNIHDSQVAFQLVKQSKRLFPEINCVVADAGYKTPKFVHFLTHLNLRP
CLPYSRPKGKKGLLSKNEFLYDEYFDCYICPQDQMLAFSTVTREGYREYKSNPKECVNCPLLNQCTKSKNHQRVITRHVWGDLMDEVEHLRLTDLNKSIY
KKRKQTIERIFADAKEKHGMRWTKYRGLEKVATHTMLVFAAMNLKKLATWLWKGKEPLFFCSKIRNEVDKKLFQARVTSLEQLLSTV
Blast result :
Comments
ISEfa7 is 69% aa similar to ISSag8.
The STOP codon is in the insertion site.
The STOP codon is in the insertion site.
References
1] ISfinder annotation (2005)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.