ISBma2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008835 ND Burkholderia mallei
Burkholderia mallei ATCC:23344
DNA section
IS Length : 1573 bp

Ends


IR Length : 16/18

IRL : CAGATTGCTGACAAACCCTCGCCAAGTGGGGGATTTTTGTTTTTTAATGG
IRR : CAGACTGCTGACGAACCCCACGTTTTTGTGAGCGTGGGGTTTTGTCTTTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CAGATTGCTGACAAACCCTCGCCAAGTGGGGGATTTTTGTTTTTTAATGGCGTGATGCTGAAGACGCCCATGCCCACGCAGCACGAACTCGAGATGGTGA
CGCTCGAGGAACTCGTGCCGAAGGACCACCTGCTGCGCCAGATCGATGCGGCGGTGGATTTCGAGTTCATCCGCGCGAAGGTGGCGCATCTGTATTGCGC
GGACAACGGGCGGCCGGCGCTCGATCCCGTGGTGATGTTCAAGCTGTTGTTCATCGGCTACCTGTTCGGGGTGCGCAGCGAGCGGCAACTGATGCGTGAG
GTCCAGGTCAACGTCGCCTATCGCTGGTTCGCCCGGTTCCGGCTGACCGACAAGGTGCCGGATGCGTCAACGTTCTCGCAGAATCGCCGCCGACGCTTCA
CGGACACGACGGTGTATCAGGAGATCTTCGACGAGATCGTGCGGCAGGCGATCAAGCGCGGGCTGGTCGACGGTCGGGTGCTGTACACGGACAGCACGCA
CCTGAAGGCGAACGCGAACAAAGGCAAGTTCGATGTGGTGAAGCTGGAGCAGACGCCGGCCGCCTACACGGAGGCATTGAACGCGGCAGTGGATGCGGAC
CGGGCCGCGCATGGCAGGAAGCCGCTGGATCGCGACGACGATGAGCCGCCGTCTAGCAAGGACACCAAGCTCAGCCGGACCGATCCGGACAGCGGCTACA
TGGTGCGGGACGACAAGCCGAAGGGGTTCTTCTATCTGGACCACCGCACGGTGGATGCCAAGCACGCGATCATCACCGATACGCATGTGACGCCGGCCTC
GGTGCATGACAGCCAGCCGTATCTGGATCGGCTGGATCGCCAGCGCGAGCGCTTTGAGTTCAAGGTCGAGGCGGTGGGGCTGGATGCGGGCTACTTCACG
CCGGCGGTGTGCCAGGGGCTGGAGGAGCGAGGGATTGCCGGGGTGATGGGCTATCGCACGCCGAACCACAAGCCGGGCATGTTCTACAAACGGCAGTTCA
AGTACGACGCGTATCGCAACGAATACGTGTGCCCGCAGGGGCAGGCCCTGCCGTACAGCACGACCAATCGGCTCGGCTATCGGGAATACAAATCCAATGC
GCAGATCTGCGGGCGCTGCCCGGTACGATCGCAGTGCACGAACAGTGCGATCGCGGTGAAGGTGGTAACGCGCCACGTGTGGGAGCGCGCCAAGGAGCGG
GTGGACGCGCGGCGCTTGACCGAATGGGGCCAACGCATTTACGCGCGGCGCAAGCAGACGGTGGAGCGCAGCTTCGCCGATGCCAAGCAGCTGCATGGGC
ACCGTTATGCCCGTATGCGTGGGCTACGCAAGGTGGCCGAGCAGTGCTTGCTGGCCGCGGCGGCACAGAACATCAAGAAGATTGCGATGCTGCTGGCGCG
GAAGCGGAAAAAGGGGCCAGCGGGTCCCGATTGGCGCTTCGTGCGCATGCTGCTGCGTCTGGTGAGCGGTTTGCGCTGCAGCTTCGACTACCCGCTCGCG
GCGAACCCGCAATCCTGATCCCAGAAAGACAAAACCCCACGCTCACAAAAACGTGGGGTTCGTCAGCAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1464 bp487 aa551518+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKTPMPTQHELEMVTLEELVPKDHLLRQIDAAVDFEFIRAKVAHLYCADNGRPALDPVVMFKLLFIGYLFGVRSERQLMREVQVNVAYRWFARFRLTDK
VPDASTFSQNRRRRFTDTTVYQEIFDEIVRQAIKRGLVDGRVLYTDSTHLKANANKGKFDVVKLEQTPAAYTEALNAAVDADRAAHGRKPLDRDDDEPPS
SKDTKLSRTDPDSGYMVRDDKPKGFFYLDHRTVDAKHAIITDTHVTPASVHDSQPYLDRLDRQRERFEFKVEAVGLDAGYFTPAVCQGLEERGIAGVMGY
RTPNHKPGMFYKRQFKYDAYRNEYVCPQGQALPYSTTNRLGYREYKSNAQICGRCPVRSQCTNSAIAVKVVTRHVWERAKERVDARRLTEWGQRIYARRK
QTVERSFADAKQLHGHRYARMRGLRKVAEQCLLAAAAQNIKKIAMLLVRKRKKGPAGPDWRFVRMLLRLVSGLRCSFDYPLAANPQS

 

Blast result :
Comments
ISBma2 is 43% aa similar to ISPsy27.
References
1] ISfinder annotation (2005)
2] Deboy, B. (2005) Direct submission.