ISBma2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008835 | ND | Burkholderia mallei | Burkholderia mallei ATCC:23344 |
DNA section
IS Length : 1573 bp
Ends
IR Length : 16/18
IRL : CAGATTGCTGACAAACCCTCGCCAAGTGGGGGATTTTTGTTTTTTAATGG
IRR : CAGACTGCTGACGAACCCCACGTTTTTGTGAGCGTGGGGTTTTGTCTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAGATTGCTGACAAACCCTCGCCAAGTGGGGGATTTTTGTTTTTTAATGGCGTGATGCTGAAGACGCCCATGCCCACGCAGCACGAACTCGAGATGGTGA
CGCTCGAGGAACTCGTGCCGAAGGACCACCTGCTGCGCCAGATCGATGCGGCGGTGGATTTCGAGTTCATCCGCGCGAAGGTGGCGCATCTGTATTGCGC
GGACAACGGGCGGCCGGCGCTCGATCCCGTGGTGATGTTCAAGCTGTTGTTCATCGGCTACCTGTTCGGGGTGCGCAGCGAGCGGCAACTGATGCGTGAG
GTCCAGGTCAACGTCGCCTATCGCTGGTTCGCCCGGTTCCGGCTGACCGACAAGGTGCCGGATGCGTCAACGTTCTCGCAGAATCGCCGCCGACGCTTCA
CGGACACGACGGTGTATCAGGAGATCTTCGACGAGATCGTGCGGCAGGCGATCAAGCGCGGGCTGGTCGACGGTCGGGTGCTGTACACGGACAGCACGCA
CCTGAAGGCGAACGCGAACAAAGGCAAGTTCGATGTGGTGAAGCTGGAGCAGACGCCGGCCGCCTACACGGAGGCATTGAACGCGGCAGTGGATGCGGAC
CGGGCCGCGCATGGCAGGAAGCCGCTGGATCGCGACGACGATGAGCCGCCGTCTAGCAAGGACACCAAGCTCAGCCGGACCGATCCGGACAGCGGCTACA
TGGTGCGGGACGACAAGCCGAAGGGGTTCTTCTATCTGGACCACCGCACGGTGGATGCCAAGCACGCGATCATCACCGATACGCATGTGACGCCGGCCTC
GGTGCATGACAGCCAGCCGTATCTGGATCGGCTGGATCGCCAGCGCGAGCGCTTTGAGTTCAAGGTCGAGGCGGTGGGGCTGGATGCGGGCTACTTCACG
CCGGCGGTGTGCCAGGGGCTGGAGGAGCGAGGGATTGCCGGGGTGATGGGCTATCGCACGCCGAACCACAAGCCGGGCATGTTCTACAAACGGCAGTTCA
AGTACGACGCGTATCGCAACGAATACGTGTGCCCGCAGGGGCAGGCCCTGCCGTACAGCACGACCAATCGGCTCGGCTATCGGGAATACAAATCCAATGC
GCAGATCTGCGGGCGCTGCCCGGTACGATCGCAGTGCACGAACAGTGCGATCGCGGTGAAGGTGGTAACGCGCCACGTGTGGGAGCGCGCCAAGGAGCGG
GTGGACGCGCGGCGCTTGACCGAATGGGGCCAACGCATTTACGCGCGGCGCAAGCAGACGGTGGAGCGCAGCTTCGCCGATGCCAAGCAGCTGCATGGGC
ACCGTTATGCCCGTATGCGTGGGCTACGCAAGGTGGCCGAGCAGTGCTTGCTGGCCGCGGCGGCACAGAACATCAAGAAGATTGCGATGCTGCTGGCGCG
GAAGCGGAAAAAGGGGCCAGCGGGTCCCGATTGGCGCTTCGTGCGCATGCTGCTGCGTCTGGTGAGCGGTTTGCGCTGCAGCTTCGACTACCCGCTCGCG
GCGAACCCGCAATCCTGATCCCAGAAAGACAAAACCCCACGCTCACAAAAACGTGGGGTTCGTCAGCAGTCTG
CGCTCGAGGAACTCGTGCCGAAGGACCACCTGCTGCGCCAGATCGATGCGGCGGTGGATTTCGAGTTCATCCGCGCGAAGGTGGCGCATCTGTATTGCGC
GGACAACGGGCGGCCGGCGCTCGATCCCGTGGTGATGTTCAAGCTGTTGTTCATCGGCTACCTGTTCGGGGTGCGCAGCGAGCGGCAACTGATGCGTGAG
GTCCAGGTCAACGTCGCCTATCGCTGGTTCGCCCGGTTCCGGCTGACCGACAAGGTGCCGGATGCGTCAACGTTCTCGCAGAATCGCCGCCGACGCTTCA
CGGACACGACGGTGTATCAGGAGATCTTCGACGAGATCGTGCGGCAGGCGATCAAGCGCGGGCTGGTCGACGGTCGGGTGCTGTACACGGACAGCACGCA
CCTGAAGGCGAACGCGAACAAAGGCAAGTTCGATGTGGTGAAGCTGGAGCAGACGCCGGCCGCCTACACGGAGGCATTGAACGCGGCAGTGGATGCGGAC
CGGGCCGCGCATGGCAGGAAGCCGCTGGATCGCGACGACGATGAGCCGCCGTCTAGCAAGGACACCAAGCTCAGCCGGACCGATCCGGACAGCGGCTACA
TGGTGCGGGACGACAAGCCGAAGGGGTTCTTCTATCTGGACCACCGCACGGTGGATGCCAAGCACGCGATCATCACCGATACGCATGTGACGCCGGCCTC
GGTGCATGACAGCCAGCCGTATCTGGATCGGCTGGATCGCCAGCGCGAGCGCTTTGAGTTCAAGGTCGAGGCGGTGGGGCTGGATGCGGGCTACTTCACG
CCGGCGGTGTGCCAGGGGCTGGAGGAGCGAGGGATTGCCGGGGTGATGGGCTATCGCACGCCGAACCACAAGCCGGGCATGTTCTACAAACGGCAGTTCA
AGTACGACGCGTATCGCAACGAATACGTGTGCCCGCAGGGGCAGGCCCTGCCGTACAGCACGACCAATCGGCTCGGCTATCGGGAATACAAATCCAATGC
GCAGATCTGCGGGCGCTGCCCGGTACGATCGCAGTGCACGAACAGTGCGATCGCGGTGAAGGTGGTAACGCGCCACGTGTGGGAGCGCGCCAAGGAGCGG
GTGGACGCGCGGCGCTTGACCGAATGGGGCCAACGCATTTACGCGCGGCGCAAGCAGACGGTGGAGCGCAGCTTCGCCGATGCCAAGCAGCTGCATGGGC
ACCGTTATGCCCGTATGCGTGGGCTACGCAAGGTGGCCGAGCAGTGCTTGCTGGCCGCGGCGGCACAGAACATCAAGAAGATTGCGATGCTGCTGGCGCG
GAAGCGGAAAAAGGGGCCAGCGGGTCCCGATTGGCGCTTCGTGCGCATGCTGCTGCGTCTGGTGAGCGGTTTGCGCTGCAGCTTCGACTACCCGCTCGCG
GCGAACCCGCAATCCTGATCCCAGAAAGACAAAACCCCACGCTCACAAAAACGTGGGGTTCGTCAGCAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1464 bp | 487 aa | 55 | 1518 | + | No |
Chemistry : DDE
ORF sequence :
MLKTPMPTQHELEMVTLEELVPKDHLLRQIDAAVDFEFIRAKVAHLYCADNGRPALDPVVMFKLLFIGYLFGVRSERQLMREVQVNVAYRWFARFRLTDK
VPDASTFSQNRRRRFTDTTVYQEIFDEIVRQAIKRGLVDGRVLYTDSTHLKANANKGKFDVVKLEQTPAAYTEALNAAVDADRAAHGRKPLDRDDDEPPS
SKDTKLSRTDPDSGYMVRDDKPKGFFYLDHRTVDAKHAIITDTHVTPASVHDSQPYLDRLDRQRERFEFKVEAVGLDAGYFTPAVCQGLEERGIAGVMGY
RTPNHKPGMFYKRQFKYDAYRNEYVCPQGQALPYSTTNRLGYREYKSNAQICGRCPVRSQCTNSAIAVKVVTRHVWERAKERVDARRLTEWGQRIYARRK
QTVERSFADAKQLHGHRYARMRGLRKVAEQCLLAAAAQNIKKIAMLLVRKRKKGPAGPDWRFVRMLLRLVSGLRCSFDYPLAANPQS
VPDASTFSQNRRRRFTDTTVYQEIFDEIVRQAIKRGLVDGRVLYTDSTHLKANANKGKFDVVKLEQTPAAYTEALNAAVDADRAAHGRKPLDRDDDEPPS
SKDTKLSRTDPDSGYMVRDDKPKGFFYLDHRTVDAKHAIITDTHVTPASVHDSQPYLDRLDRQRERFEFKVEAVGLDAGYFTPAVCQGLEERGIAGVMGY
RTPNHKPGMFYKRQFKYDAYRNEYVCPQGQALPYSTTNRLGYREYKSNAQICGRCPVRSQCTNSAIAVKVVTRHVWERAKERVDARRLTEWGQRIYARRK
QTVERSFADAKQLHGHRYARMRGLRKVAEQCLLAAAAQNIKKIAMLLVRKRKKGPAGPDWRFVRMLLRLVSGLRCSFDYPLAANPQS
Blast result :
Comments
ISBma2 is 43% aa similar to ISPsy27.
References
1] ISfinder annotation (2005)
2] Deboy, B. (2005) Direct submission.
2] Deboy, B. (2005) Direct submission.