ISBfun3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAAJ03000031 ND Burkholderia fungorum
Burkholderia fungorum LB400
DNA section
IS Length : 1627 bp

Ends


IR Length : 14/15

IRL : CAGACTGCTGACAAAGTACCCCAAAGCCTGGCCAAGCGCCGGGCTTTGTC
IRR : CAGACTGCTGACCAACCCCACGTTTTTCGGAGCGTGGGGTTTTGTTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCGGACAGCACAAGAAACCGGACAACGTCCGGTTCTTTTTTGTGCTTA19
AGTTCTCACAAAAAAACGGCCACCTTTATGAGGTGGCCGTTTTTCTTTCAGAATAAC23

DNA sequence

CAGACTGCTGACAAAGTACCCCAAAGCCTGGCCAAGCGCCGGGCTTTGTCGTTTAATGAGCCTCATGCTCAAGAAACCGACACCCATGCAGCACGAACTC
GAGATGGTCACGCTCGAGGAACTCGTGCCGAAGGACCACCTGCTGCGCAAGATCGACGCGGCGGTGGATTTCGAGTTCATCCGCGAGAAGGTGGCGCACC
TGTACTGCGCGGACAACGGGCGGCCCGCGCTGGACCCGGTGGTGATGTTCAAACTGCTGTTCGTCGGCTACCTGTTCGGGGTGCGCAGCGAGCGCCAACT
CATGCGCGAGGTGCAGGTCAATGTCGCTTACCGGTGGTTCGCGCGCTTGCGGCTGACTGACCGGGTGCCCGATGCCTCGACGTTCTCGCAGAACCGGCGC
CGGCGTTTCACCGACACGACGGTCTACCAGGAGATCTTCGACGCGATCGTGCAGCAGGCGATCGGGCGCGGCATGGTCGAGGGGCGCGTGCTCTACACCG
ATAGCACGCACCTGAAGGCCAATGCGAACAAACGCAAGTTCGATCTGGTACAGCTTGAGCAGACGCCCTCGGCCTATCTGGCCGCGCTGGATGCCGCGGT
CGATGCCGATCGTGCCGCGCACGATAAAAAGCCGCTCAGGCGCGACGGGCCGCAGGCCAACGACAAGGGAAAGAACGACGACGACACGCCGGGTTCGTCG
GGGACAGGCGAAGGCAAGGAAACGAAGGTCAGCCGCACCGACCCTGAGAGCGGCTACATGGTGCGCGACGACAAGCCCACGGGCTTCTTCTATCTGGATC
ACCGCACGGTCGACGCGCGCTACCCGATCATCACCGACACCCACGTGACGCCGGCCTCGGTGCACGACAGCCAGCCTTATCTGGCGCGTCTGGACCGGCA
GCGCAGGCGCTTCGGTTTCCATGTGCAGGCCGTGGGGCTGGACGCGGGCTACTTCACGCCAGCAATCTGTCAGGGGCTGGAGGATCGCGGCATCGATGGC
GTGATGGGCTACCGCACGCCGAATCACAAACCCGGATTCTTCTACAAACGCGACTTCAGATACAGCCGGTATCGCGAGGAATACACCTGTCCGCAGGGAC
AGGTGCTGCGCTACAGCACAACGAACCGCGCGGGCTACCAGGAGTTCAGGTCCGATCCGTCGCAATGCGGTGGCTGCCCGGTGCGCGAGAAATGCACGAC
GAGCGCCAACCACGTGAAGGTGGTCATCCGGCACGTCTGGGAGCGCGCAAAAGAGCGGGTCGATGCGCGTCGCCTGACCGGCTGGGGCAAGGCGATCTAC
AAGCGGCGCAAGGAAACGGTGGAGCGCAGCTTTGCGGATGCCAAACAGTTGCACGGGCATCGCTATGCGCGCATGCGTGGCCTGCGCAAGGTGGCCGAGC
AGTGCCTGCTGGGCGCGGCCGCGCAGAACATCAAGAAGATCGCCCTGCTGGTGGCACGCCTGAAGGCGTGTTTGCGCGTGCCTGGCTCCCGTCCTGGCGT
CCTGCACAGGCTCGCCAGCGCGTTTCTGGCCCGCTTCGTCCGATCTGGGGAGACCCCTCGCACGGTCTGCCTGGCCTGAAAAACAAAACCCCACGCTCCG
AAAAACGTGGGGTTGGTCAGCAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1524 bp507 aa561579+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLMLKKPTPMQHELEMVTLEELVPKDHLLRKIDAAVDFEFIREKVAHLYCADNGRPALDPVVMFKLLFVGYLFGVRSERQLMREVQVNVAYRWFARLRL
TDRVPDASTFSQNRRRRFTDTTVYQEIFDAIVQQAIGRGMVEGRVLYTDSTHLKANANKRKFDLVQLEQTPSAYLAALDAAVDADRAAHDKKPLRRDGPQ
ANDKGKNDDDTPGSSGTGEGKETKVSRTDPESGYMVRDDKPTGFFYLDHRTVDARYPIITDTHVTPASVHDSQPYLARLDRQRRRFGFHVQAVGLDAGYF
TPAICQGLEDRGIDGVMGYRTPNHKPGFFYKRDFRYSRYREEYTCPQGQVLRYSTTNRAGYQEFRSDPSQCGGCPVREKCTTSANHVKVVIRHVWERAKE
RVDARRLTGWGKAIYKRRKETVERSFADAKQLHGHRYARMRGLRKVAEQCLLGAAAQNIKKIALLVARLKACLRVPGSRPGVLHRLASAFLARFVRSGET
PRTVCLA

 

Blast result :
Comments
ISBfun3 is 87% aa similar to ISBma2.
References
1] ISfinder annotation (2005)
2] Paul Richardson (2004) Direct submission GenBank.