ISBfun3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAAJ03000031 | ND | Burkholderia fungorum | Burkholderia fungorum LB400 |
DNA section
IS Length : 1627 bp
Ends
IR Length : 14/15
IRL : CAGACTGCTGACAAAGTACCCCAAAGCCTGGCCAAGCGCCGGGCTTTGTC
IRR : CAGACTGCTGACCAACCCCACGTTTTTCGGAGCGTGGGGTTTTGTTTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCGGACAGCACAAGA | AACCGGACAACGTCCGGTT | CTTTTTTGTGCTTA | 19 |
AGTTCTCACAAAAAAA | CGGCCACCTTTATGAGGTGGCCG | TTTTTCTTTCAGAATAAC | 23 |
DNA sequence
CAGACTGCTGACAAAGTACCCCAAAGCCTGGCCAAGCGCCGGGCTTTGTCGTTTAATGAGCCTCATGCTCAAGAAACCGACACCCATGCAGCACGAACTC
GAGATGGTCACGCTCGAGGAACTCGTGCCGAAGGACCACCTGCTGCGCAAGATCGACGCGGCGGTGGATTTCGAGTTCATCCGCGAGAAGGTGGCGCACC
TGTACTGCGCGGACAACGGGCGGCCCGCGCTGGACCCGGTGGTGATGTTCAAACTGCTGTTCGTCGGCTACCTGTTCGGGGTGCGCAGCGAGCGCCAACT
CATGCGCGAGGTGCAGGTCAATGTCGCTTACCGGTGGTTCGCGCGCTTGCGGCTGACTGACCGGGTGCCCGATGCCTCGACGTTCTCGCAGAACCGGCGC
CGGCGTTTCACCGACACGACGGTCTACCAGGAGATCTTCGACGCGATCGTGCAGCAGGCGATCGGGCGCGGCATGGTCGAGGGGCGCGTGCTCTACACCG
ATAGCACGCACCTGAAGGCCAATGCGAACAAACGCAAGTTCGATCTGGTACAGCTTGAGCAGACGCCCTCGGCCTATCTGGCCGCGCTGGATGCCGCGGT
CGATGCCGATCGTGCCGCGCACGATAAAAAGCCGCTCAGGCGCGACGGGCCGCAGGCCAACGACAAGGGAAAGAACGACGACGACACGCCGGGTTCGTCG
GGGACAGGCGAAGGCAAGGAAACGAAGGTCAGCCGCACCGACCCTGAGAGCGGCTACATGGTGCGCGACGACAAGCCCACGGGCTTCTTCTATCTGGATC
ACCGCACGGTCGACGCGCGCTACCCGATCATCACCGACACCCACGTGACGCCGGCCTCGGTGCACGACAGCCAGCCTTATCTGGCGCGTCTGGACCGGCA
GCGCAGGCGCTTCGGTTTCCATGTGCAGGCCGTGGGGCTGGACGCGGGCTACTTCACGCCAGCAATCTGTCAGGGGCTGGAGGATCGCGGCATCGATGGC
GTGATGGGCTACCGCACGCCGAATCACAAACCCGGATTCTTCTACAAACGCGACTTCAGATACAGCCGGTATCGCGAGGAATACACCTGTCCGCAGGGAC
AGGTGCTGCGCTACAGCACAACGAACCGCGCGGGCTACCAGGAGTTCAGGTCCGATCCGTCGCAATGCGGTGGCTGCCCGGTGCGCGAGAAATGCACGAC
GAGCGCCAACCACGTGAAGGTGGTCATCCGGCACGTCTGGGAGCGCGCAAAAGAGCGGGTCGATGCGCGTCGCCTGACCGGCTGGGGCAAGGCGATCTAC
AAGCGGCGCAAGGAAACGGTGGAGCGCAGCTTTGCGGATGCCAAACAGTTGCACGGGCATCGCTATGCGCGCATGCGTGGCCTGCGCAAGGTGGCCGAGC
AGTGCCTGCTGGGCGCGGCCGCGCAGAACATCAAGAAGATCGCCCTGCTGGTGGCACGCCTGAAGGCGTGTTTGCGCGTGCCTGGCTCCCGTCCTGGCGT
CCTGCACAGGCTCGCCAGCGCGTTTCTGGCCCGCTTCGTCCGATCTGGGGAGACCCCTCGCACGGTCTGCCTGGCCTGAAAAACAAAACCCCACGCTCCG
AAAAACGTGGGGTTGGTCAGCAGTCTG
GAGATGGTCACGCTCGAGGAACTCGTGCCGAAGGACCACCTGCTGCGCAAGATCGACGCGGCGGTGGATTTCGAGTTCATCCGCGAGAAGGTGGCGCACC
TGTACTGCGCGGACAACGGGCGGCCCGCGCTGGACCCGGTGGTGATGTTCAAACTGCTGTTCGTCGGCTACCTGTTCGGGGTGCGCAGCGAGCGCCAACT
CATGCGCGAGGTGCAGGTCAATGTCGCTTACCGGTGGTTCGCGCGCTTGCGGCTGACTGACCGGGTGCCCGATGCCTCGACGTTCTCGCAGAACCGGCGC
CGGCGTTTCACCGACACGACGGTCTACCAGGAGATCTTCGACGCGATCGTGCAGCAGGCGATCGGGCGCGGCATGGTCGAGGGGCGCGTGCTCTACACCG
ATAGCACGCACCTGAAGGCCAATGCGAACAAACGCAAGTTCGATCTGGTACAGCTTGAGCAGACGCCCTCGGCCTATCTGGCCGCGCTGGATGCCGCGGT
CGATGCCGATCGTGCCGCGCACGATAAAAAGCCGCTCAGGCGCGACGGGCCGCAGGCCAACGACAAGGGAAAGAACGACGACGACACGCCGGGTTCGTCG
GGGACAGGCGAAGGCAAGGAAACGAAGGTCAGCCGCACCGACCCTGAGAGCGGCTACATGGTGCGCGACGACAAGCCCACGGGCTTCTTCTATCTGGATC
ACCGCACGGTCGACGCGCGCTACCCGATCATCACCGACACCCACGTGACGCCGGCCTCGGTGCACGACAGCCAGCCTTATCTGGCGCGTCTGGACCGGCA
GCGCAGGCGCTTCGGTTTCCATGTGCAGGCCGTGGGGCTGGACGCGGGCTACTTCACGCCAGCAATCTGTCAGGGGCTGGAGGATCGCGGCATCGATGGC
GTGATGGGCTACCGCACGCCGAATCACAAACCCGGATTCTTCTACAAACGCGACTTCAGATACAGCCGGTATCGCGAGGAATACACCTGTCCGCAGGGAC
AGGTGCTGCGCTACAGCACAACGAACCGCGCGGGCTACCAGGAGTTCAGGTCCGATCCGTCGCAATGCGGTGGCTGCCCGGTGCGCGAGAAATGCACGAC
GAGCGCCAACCACGTGAAGGTGGTCATCCGGCACGTCTGGGAGCGCGCAAAAGAGCGGGTCGATGCGCGTCGCCTGACCGGCTGGGGCAAGGCGATCTAC
AAGCGGCGCAAGGAAACGGTGGAGCGCAGCTTTGCGGATGCCAAACAGTTGCACGGGCATCGCTATGCGCGCATGCGTGGCCTGCGCAAGGTGGCCGAGC
AGTGCCTGCTGGGCGCGGCCGCGCAGAACATCAAGAAGATCGCCCTGCTGGTGGCACGCCTGAAGGCGTGTTTGCGCGTGCCTGGCTCCCGTCCTGGCGT
CCTGCACAGGCTCGCCAGCGCGTTTCTGGCCCGCTTCGTCCGATCTGGGGAGACCCCTCGCACGGTCTGCCTGGCCTGAAAAACAAAACCCCACGCTCCG
AAAAACGTGGGGTTGGTCAGCAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1524 bp | 507 aa | 56 | 1579 | + | No |
Chemistry : DDE
ORF sequence :
MSLMLKKPTPMQHELEMVTLEELVPKDHLLRKIDAAVDFEFIREKVAHLYCADNGRPALDPVVMFKLLFVGYLFGVRSERQLMREVQVNVAYRWFARLRL
TDRVPDASTFSQNRRRRFTDTTVYQEIFDAIVQQAIGRGMVEGRVLYTDSTHLKANANKRKFDLVQLEQTPSAYLAALDAAVDADRAAHDKKPLRRDGPQ
ANDKGKNDDDTPGSSGTGEGKETKVSRTDPESGYMVRDDKPTGFFYLDHRTVDARYPIITDTHVTPASVHDSQPYLARLDRQRRRFGFHVQAVGLDAGYF
TPAICQGLEDRGIDGVMGYRTPNHKPGFFYKRDFRYSRYREEYTCPQGQVLRYSTTNRAGYQEFRSDPSQCGGCPVREKCTTSANHVKVVIRHVWERAKE
RVDARRLTGWGKAIYKRRKETVERSFADAKQLHGHRYARMRGLRKVAEQCLLGAAAQNIKKIALLVARLKACLRVPGSRPGVLHRLASAFLARFVRSGET
PRTVCLA
TDRVPDASTFSQNRRRRFTDTTVYQEIFDAIVQQAIGRGMVEGRVLYTDSTHLKANANKRKFDLVQLEQTPSAYLAALDAAVDADRAAHDKKPLRRDGPQ
ANDKGKNDDDTPGSSGTGEGKETKVSRTDPESGYMVRDDKPTGFFYLDHRTVDARYPIITDTHVTPASVHDSQPYLARLDRQRRRFGFHVQAVGLDAGYF
TPAICQGLEDRGIDGVMGYRTPNHKPGFFYKRDFRYSRYREEYTCPQGQVLRYSTTNRAGYQEFRSDPSQCGGCPVREKCTTSANHVKVVIRHVWERAKE
RVDARRLTGWGKAIYKRRKETVERSFADAKQLHGHRYARMRGLRKVAEQCLLGAAAQNIKKIALLVARLKACLRVPGSRPGVLHRLASAFLARFVRSGET
PRTVCLA
Blast result :
Comments
ISBfun3 is 87% aa similar to ISBma2.
References
1] ISfinder annotation (2005)
2] Paul Richardson (2004) Direct submission GenBank.
2] Paul Richardson (2004) Direct submission GenBank.