ISArch2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714861 ND Uncultured archaeon
Uncultured archaeon GZfos34H10 clone GZfos34H10
DNA section
IS Length : 1924 bp

Ends


IR Length : 14

IRL : CAGGCTGTCCCACATTTACCCAACAACCAATAGAAATTATACAATAGTAC
IRR : CAGGCTGTCCCACAAACTAATTATAGAATTTTATTATACATAAAGGCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTGTCTTTACCTTAAAGGTATAAGCACCAATA4

DNA sequence

CAGGCTGTCCCACATTTACCCAACAACCAATAGAAATTATACAATAGTACAAAAATCTAAAAAAACGCTTTCTTTCTAACGGAATGCACATTTATAGCCA
GACTTTTCTCAAATTGCAAAAATACCACTTAGAAGAATACATATCTTAGTTCCAACCGAAATTAAACCGAAAGGTTTTTATTATGGCATGCACAACTATT
CTTTAGTTATAAAAACGAGGTGATTGTAACGGATGGCGATACGAAGCGATAAAATAGGGCAATCTTGGCTATTGCCCCCTGCTGTTAGTGAACTCATACC
AGAAGACCATATTTGCAACTTGGTTGAGGTAGTAGTGGATAACATGGACGTTGGTGAAATTGAGCAGAAGTACAGGTCCGGACCGGGCAATCCTGCATAT
TCACGGCGGATGTTGCTAAGAATAGTGATAATGGCGTCTGCTGATGCCATTTGGTCTTCGAGAAAGATAGCAAAGCTAGCTCATGAGAATGTAGTGTATA
TGTATCTAACAGGGCATGAGAAGCCGGATTTCCGAACGATATGCAATTTTAAAAAGGAGTGTGAGGGACTAATTGAAGCGGCGTTCAAGGAAACCGTCAC
GATTGCTAAAGCATTAGGAATACTTAACTTAGAGCACATATCAACCGATGGTACCAAGATGAAAGCAAATGCTTCAAACAAGCACACGCTGAGTAAGGAA
GAGATAGAGTGGATAAGAAAAATAATAGCGAGAGGGATTGCGATAGATAAAGAGGAGGACAAGCTCTACGGAGATAAGAGAGGTGACGAGCTGCCACCCG
AACTCAATACGCAGGAGAAGATTCGTGAGAAGATAAAGGAGATTGAAGAAGCTTCCGGCCAGAAAATGAAGGGCGCGGCGAAGAAAATTATCGTGCAGCA
TGTGCTTGGCGATGAAAAAGATAAGGCGGCAATAATGAAAAAGCTCGATAAGGCAGAGGAAGAGCTTACAAAGAGTGGACAAGGTGCCGTCAGCATAACC
GACCCAGAATCCCGATTTATGGAGAACAAGAAGAAACGTAAAGAGTTATCATACAATCCTCAGATAACGGTAGACCACGGTTCTGGGATAGTTCTTGCTA
ATGGCGTTACTCAGGACTGTACAGACCATTACCAGTTGCAACCGCAGCTAGAAATGACGGTTGAGAACATAGATAGCTTGCCTGAATGGACAAAGGTGAG
TATGGATAATGGCTACTTCAACGGTCCCAACCTCCGGTATTTGGAAGAGGCAGGGGTGGATGGCTATATTCCGGACAGCAAGCAGGCCCAGAAGATGAAT
GGTAAGAAGGTAAAAGACAGTCCTTATTCGAAGGACAAGTTTGTGTATGATGAAGAGAATGACCAATTTATATGCCCTAATGGAGATATACTCACCAGAA
AGGGGGAGTATGTGCGTAAAGGTAAGCTACAGTACTCTTATTATGGTGCAAACTGTGGAGAATGCCCTTTCAGGGAGGAATGTGCCGGTAAAAGCAAAAA
AAGAAAGATCACGAGCGATGACTACGAGGCAGAACGTAGGCGGATGGCAGGTAAAATGTGTTCCGAGAAAGGGAAAGAGGAATACAAGAAGCGTAAGGAG
ACTGTTGAATGGCCCTTTGGCAACATTAAGCAAAATATGAAGTTTCGGGAGTTTCATACAAGAGGGCTAGAAAATGTGCAGATCGAGCATAATCTTGTAT
GCACTGCTCATAATCTGGGGGTGATGTGGGGTAAATTAGGTGGCAGTGTGGCTGCTTTATCTAATATTAAGGGTTTGGTAGCTAATTTCGCATTTAGGGT
ATCAAGTATTTAGGTTTTTATTCATATTTCCTCTCGGAGTGTCATGAACTTTCGATTTTTGTTGATTTACTGTCATTGCCTTTATGTATAATAAAATTCT
ATAATTAGTTTGTGGGACAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1581 bp526 aa2331813+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAIRSDKIGQSWLLPPAVSELIPEDHICNLVEVVVDNMDVGEIEQKYRSGPGNPAYSRRMLLRIVIMASADAIWSSRKIAKLAHENVVYMYLTGHEKPDF
RTICNFKKECEGLIEAAFKETVTIAKALGILNLEHISTDGTKMKANASNKHTLSKEEIEWIRKIIARGIAIDKEEDKLYGDKRGDELPPELNTQEKIREK
IKEIEEASGQKMKGAAKKIIVQHVLGDEKDKAAIMKKLDKAEEELTKSGQGAVSITDPESRFMENKKKRKELSYNPQITVDHGSGIVLANGVTQDCTDHY
QLQPQLEMTVENIDSLPEWTKVSMDNGYFNGPNLRYLEEAGVDGYIPDSKQAQKMNGKKVKDSPYSKDKFVYDEENDQFICPNGDILTRKGEYVRKGKLQ
YSYYGANCGECPFREECAGKSKKRKITSDDYEAERRRMAGKMCSEKGKEEYKKRKETVEWPFGNIKQNMKFREFHTRGLENVQIEHNLVCTAHNLGVMWG
KLGGSVAALSNIKGLVANFAFRVSSI

 

Blast result :
Comments
ISArch2 is 62% aa similar to ISArch1.
References
1] ISfinder annotation (2005)
2] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462