ISPfl3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas fluorescens | Pseudomonas fluorescens PfO-1 |
DNA section
IS Length : 1585 bp
Ends
IR Length : 16
IRL : CAGACTGTGTGAAAACCTAGCAATCTGTCCGGCCCTTTAAGAAAATGCTC
IRR : CAGACTGTGTGAAAACACACTGACAGGCCTAAGACCAAACGCCCCGACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGGGTGCAAAAGGGCCTGTGAT | TTCGGGCCCTTTTTTCATGGCCGCA | 0 |
DNA sequence
CAGACTGTGTGAAAACCTAGCAATCTGTCCGGCCCTTTAAGAAAATGCTCCGTATCGAAAGATACGGAGCATTTTTCGTTATGGCCTACATACAAGGAGA
GTCCCGTAGCCAGACCAGCCTGTTCCCGGTCTCGCTGGAGGAACTGATCCCTGAAGATCACCTCGTACGAGTCATCGACCTGTATGTCGCCAAGCTCGAT
CTGGGCCAGCTCGGTTTTGAGAAAGCTCAGCCCAAGGCCTCTGGGCGCCCTGCTTACGACCCCGCCGATCAGCTCAAGCTCTATCTCTATGGCTATTTTC
AGCGCATTCGCTCGTCGCGGCGCCTAGAAGCTGAGTGCCAACGCAACATCGAAGTGATGTGGTTGATCAACCGGCTTAAACCCGACTTCAAGACCATCGC
CGACTTTCGCAAGAACAACAAAGTAGCTTTCGTTACAACGTGCCGAGCTTTTGTGCAGTTCTGCCGATCCGTCGGCTTGATTGCGGGTGATCTGGTTGCG
ATCGACGGCAGTAAGTTTCAGGCAGTCGCTTCCTCGCGACGCCACCTGAATTTGAATCAGCTCAAGCGTCAGGAGGAGAAGCTGGATAAGCGGATTGCCC
AATACTTGGCTGACCTGGATGCCGCTGATAAAGCAGAGGGCGAGCAAGTGGTCGATCGCACTGCGATCAAGGCGGCACTGGCGAAGCTTGAGGCCAAGCA
GCAAGACAACCGTAGTTGCCAAGCTTTGATGAAGTCGATGAGCCTGGAGCAATTCAACACGCACGAAAGCGATGCCCGAATGATGCGCACGCCAAAGGGG
GCGCGTGTTGCCTATAACGTGCAAACAGCCGTGGACGCAGAGCACTGTCTGATTTTGCACCATGAGGTGACGCAAGATGGTGACGACCGCAAACAGCTTG
AACCCATAGCTAAAGCTGCCAAGGCCGAACTGGGGCAGGACACGCTGACCGTGACAGCCGATATGGGCTACTCAAATGGCCAGCAATTCCAGGCGTGCGA
GGAGGCCTCCATTACCGTGTACGTGCCGCCAAACCGAACTTCGAACCCAGGCGGAGAGACATTATTCGAGCGCCAGGACTTTACCTATGACGCTGAACAG
GATCGATACCAGTGCCCGGCAGGTCAATGGCTAACCCTGAAGCAGCGTTACAAAGGCGACCGGATCTACCAGGCGGCAGTCAGCGACTGCGCTGGATGTG
CGCTGAAAGCCCAATGTACAACGGCTCAGCGCCGCTATGTCTCACGTCACGCACAAGAGGAAGCCTTTGAGCGTATGGCACAGCGGATGCAACTGCATCC
AGAGATGATGGAGCGACGCAGATCCATCGTGGAGCACCCGTTTGGCAATCTCAAACAATGGCTATTTGGTAACGGGCGGTTCTTGCTACGACAACTTGAA
GGGACGAAAGCTGAAATGGCACTGGCCGTGACCGCGTACAACTTCAAGCGGGCGATCAGTGTCCTGGGAGCCAAAAAAATGATGCAACTGATGGGCTGAA
GAGCCTTTTTCAGCACAAAAACAAACGCCCCGAATAAGTCGGGGCGTTTGGTCTTAGGCCTGTCAGTGTGTTTTCACACAGTCTG
GTCCCGTAGCCAGACCAGCCTGTTCCCGGTCTCGCTGGAGGAACTGATCCCTGAAGATCACCTCGTACGAGTCATCGACCTGTATGTCGCCAAGCTCGAT
CTGGGCCAGCTCGGTTTTGAGAAAGCTCAGCCCAAGGCCTCTGGGCGCCCTGCTTACGACCCCGCCGATCAGCTCAAGCTCTATCTCTATGGCTATTTTC
AGCGCATTCGCTCGTCGCGGCGCCTAGAAGCTGAGTGCCAACGCAACATCGAAGTGATGTGGTTGATCAACCGGCTTAAACCCGACTTCAAGACCATCGC
CGACTTTCGCAAGAACAACAAAGTAGCTTTCGTTACAACGTGCCGAGCTTTTGTGCAGTTCTGCCGATCCGTCGGCTTGATTGCGGGTGATCTGGTTGCG
ATCGACGGCAGTAAGTTTCAGGCAGTCGCTTCCTCGCGACGCCACCTGAATTTGAATCAGCTCAAGCGTCAGGAGGAGAAGCTGGATAAGCGGATTGCCC
AATACTTGGCTGACCTGGATGCCGCTGATAAAGCAGAGGGCGAGCAAGTGGTCGATCGCACTGCGATCAAGGCGGCACTGGCGAAGCTTGAGGCCAAGCA
GCAAGACAACCGTAGTTGCCAAGCTTTGATGAAGTCGATGAGCCTGGAGCAATTCAACACGCACGAAAGCGATGCCCGAATGATGCGCACGCCAAAGGGG
GCGCGTGTTGCCTATAACGTGCAAACAGCCGTGGACGCAGAGCACTGTCTGATTTTGCACCATGAGGTGACGCAAGATGGTGACGACCGCAAACAGCTTG
AACCCATAGCTAAAGCTGCCAAGGCCGAACTGGGGCAGGACACGCTGACCGTGACAGCCGATATGGGCTACTCAAATGGCCAGCAATTCCAGGCGTGCGA
GGAGGCCTCCATTACCGTGTACGTGCCGCCAAACCGAACTTCGAACCCAGGCGGAGAGACATTATTCGAGCGCCAGGACTTTACCTATGACGCTGAACAG
GATCGATACCAGTGCCCGGCAGGTCAATGGCTAACCCTGAAGCAGCGTTACAAAGGCGACCGGATCTACCAGGCGGCAGTCAGCGACTGCGCTGGATGTG
CGCTGAAAGCCCAATGTACAACGGCTCAGCGCCGCTATGTCTCACGTCACGCACAAGAGGAAGCCTTTGAGCGTATGGCACAGCGGATGCAACTGCATCC
AGAGATGATGGAGCGACGCAGATCCATCGTGGAGCACCCGTTTGGCAATCTCAAACAATGGCTATTTGGTAACGGGCGGTTCTTGCTACGACAACTTGAA
GGGACGAAAGCTGAAATGGCACTGGCCGTGACCGCGTACAACTTCAAGCGGGCGATCAGTGTCCTGGGAGCCAAAAAAATGATGCAACTGATGGGCTGAA
GAGCCTTTTTCAGCACAAAAACAAACGCCCCGAATAAGTCGGGGCGTTTGGTCTTAGGCCTGTCAGTGTGTTTTCACACAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 81 | 1499 | + | No |
Chemistry : DDE
ORF sequence :
MAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLGQLGFEKAQPKASGRPAYDPADQLKLYLYGYFQRIRSSRRLEAECQRNIEVMWLINRLK
PDFKTIADFRKNNKVAFVTTCRAFVQFCRSVGLIAGDLVAIDGSKFQAVASSRRHLNLNQLKRQEEKLDKRIAQYLADLDAADKAEGEQVVDRTAIKAAL
AKLEAKQQDNRSCQALMKSMSLEQFNTHESDARMMRTPKGARVAYNVQTAVDAEHCLILHHEVTQDGDDRKQLEPIAKAAKAELGQDTLTVTADMGYSNG
QQFQACEEASITVYVPPNRTSNPGGETLFERQDFTYDAEQDRYQCPAGQWLTLKQRYKGDRIYQAAVSDCAGCALKAQCTTAQRRYVSRHAQEEAFERMA
QRMQLHPEMMERRRSIVEHPFGNLKQWLFGNGRFLLRQLEGTKAEMALAVTAYNFKRAISVLGAKKMMQLMG
PDFKTIADFRKNNKVAFVTTCRAFVQFCRSVGLIAGDLVAIDGSKFQAVASSRRHLNLNQLKRQEEKLDKRIAQYLADLDAADKAEGEQVVDRTAIKAAL
AKLEAKQQDNRSCQALMKSMSLEQFNTHESDARMMRTPKGARVAYNVQTAVDAEHCLILHHEVTQDGDDRKQLEPIAKAAKAELGQDTLTVTADMGYSNG
QQFQACEEASITVYVPPNRTSNPGGETLFERQDFTYDAEQDRYQCPAGQWLTLKQRYKGDRIYQAAVSDCAGCALKAQCTTAQRRYVSRHAQEEAFERMA
QRMQLHPEMMERRRSIVEHPFGNLKQWLFGNGRFLLRQLEGTKAEMALAVTAYNFKRAISVLGAKKMMQLMG
Blast result :
Comments
ISPfl3 is 90% aa similar to ISPsy6.
References
1] ISfinder annotation (2005)