ISPfl3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas fluorescens
Pseudomonas fluorescens PfO-1
DNA section
IS Length : 1585 bp

Ends


IR Length : 16

IRL : CAGACTGTGTGAAAACCTAGCAATCTGTCCGGCCCTTTAAGAAAATGCTC
IRR : CAGACTGTGTGAAAACACACTGACAGGCCTAAGACCAAACGCCCCGACTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGGGTGCAAAAGGGCCTGTGATTTCGGGCCCTTTTTTCATGGCCGCA0

DNA sequence

CAGACTGTGTGAAAACCTAGCAATCTGTCCGGCCCTTTAAGAAAATGCTCCGTATCGAAAGATACGGAGCATTTTTCGTTATGGCCTACATACAAGGAGA
GTCCCGTAGCCAGACCAGCCTGTTCCCGGTCTCGCTGGAGGAACTGATCCCTGAAGATCACCTCGTACGAGTCATCGACCTGTATGTCGCCAAGCTCGAT
CTGGGCCAGCTCGGTTTTGAGAAAGCTCAGCCCAAGGCCTCTGGGCGCCCTGCTTACGACCCCGCCGATCAGCTCAAGCTCTATCTCTATGGCTATTTTC
AGCGCATTCGCTCGTCGCGGCGCCTAGAAGCTGAGTGCCAACGCAACATCGAAGTGATGTGGTTGATCAACCGGCTTAAACCCGACTTCAAGACCATCGC
CGACTTTCGCAAGAACAACAAAGTAGCTTTCGTTACAACGTGCCGAGCTTTTGTGCAGTTCTGCCGATCCGTCGGCTTGATTGCGGGTGATCTGGTTGCG
ATCGACGGCAGTAAGTTTCAGGCAGTCGCTTCCTCGCGACGCCACCTGAATTTGAATCAGCTCAAGCGTCAGGAGGAGAAGCTGGATAAGCGGATTGCCC
AATACTTGGCTGACCTGGATGCCGCTGATAAAGCAGAGGGCGAGCAAGTGGTCGATCGCACTGCGATCAAGGCGGCACTGGCGAAGCTTGAGGCCAAGCA
GCAAGACAACCGTAGTTGCCAAGCTTTGATGAAGTCGATGAGCCTGGAGCAATTCAACACGCACGAAAGCGATGCCCGAATGATGCGCACGCCAAAGGGG
GCGCGTGTTGCCTATAACGTGCAAACAGCCGTGGACGCAGAGCACTGTCTGATTTTGCACCATGAGGTGACGCAAGATGGTGACGACCGCAAACAGCTTG
AACCCATAGCTAAAGCTGCCAAGGCCGAACTGGGGCAGGACACGCTGACCGTGACAGCCGATATGGGCTACTCAAATGGCCAGCAATTCCAGGCGTGCGA
GGAGGCCTCCATTACCGTGTACGTGCCGCCAAACCGAACTTCGAACCCAGGCGGAGAGACATTATTCGAGCGCCAGGACTTTACCTATGACGCTGAACAG
GATCGATACCAGTGCCCGGCAGGTCAATGGCTAACCCTGAAGCAGCGTTACAAAGGCGACCGGATCTACCAGGCGGCAGTCAGCGACTGCGCTGGATGTG
CGCTGAAAGCCCAATGTACAACGGCTCAGCGCCGCTATGTCTCACGTCACGCACAAGAGGAAGCCTTTGAGCGTATGGCACAGCGGATGCAACTGCATCC
AGAGATGATGGAGCGACGCAGATCCATCGTGGAGCACCCGTTTGGCAATCTCAAACAATGGCTATTTGGTAACGGGCGGTTCTTGCTACGACAACTTGAA
GGGACGAAAGCTGAAATGGCACTGGCCGTGACCGCGTACAACTTCAAGCGGGCGATCAGTGTCCTGGGAGCCAAAAAAATGATGCAACTGATGGGCTGAA
GAGCCTTTTTCAGCACAAAAACAAACGCCCCGAATAAGTCGGGGCGTTTGGTCTTAGGCCTGTCAGTGTGTTTTCACACAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa811499+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLGQLGFEKAQPKASGRPAYDPADQLKLYLYGYFQRIRSSRRLEAECQRNIEVMWLINRLK
PDFKTIADFRKNNKVAFVTTCRAFVQFCRSVGLIAGDLVAIDGSKFQAVASSRRHLNLNQLKRQEEKLDKRIAQYLADLDAADKAEGEQVVDRTAIKAAL
AKLEAKQQDNRSCQALMKSMSLEQFNTHESDARMMRTPKGARVAYNVQTAVDAEHCLILHHEVTQDGDDRKQLEPIAKAAKAELGQDTLTVTADMGYSNG
QQFQACEEASITVYVPPNRTSNPGGETLFERQDFTYDAEQDRYQCPAGQWLTLKQRYKGDRIYQAAVSDCAGCALKAQCTTAQRRYVSRHAQEEAFERMA
QRMQLHPEMMERRRSIVEHPFGNLKQWLFGNGRFLLRQLEGTKAEMALAVTAYNFKRAISVLGAKKMMQLMG

 

Blast result :
Comments
ISPfl3 is 90% aa similar to ISPsy6.
References
1] ISfinder annotation (2005)