ISBf5

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006347 ND Bacteroides fragilis
Bacteroides fragilis YCH46
DNA section
IS Length : 1830 bp

Ends


IR Length : 7/8

IRL : CACAATTTCAGTGGTAAAAGGGGCTGTCCAAAAAGTCGGATAGCCCCTTT
IRR : CACAATATTTCGGAGACAATATTCCTGGGGTCGTAATGAAACGAAGCACC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CACAATTTCAGTGGTAAAAGGGGCTGTCCAAAAAGTCGGATAGCCCCTTTTGCTATTGTTTATTTCGTTAAAAATCAGTATCTTACCGTTGCAACAAATA
AACATTATAGCAATGGCTAAGATAGTATTTAAAGAGTTAACTTCCAACCAAAATGTACTTTTTCCTGTCAGTTTATCGGAAAAGATCGCTCCCAATCATC
CCGTTCGTGTTGTAAACAGTGTTGTAGACGCATTGGATATTAGTTGTCTGCTTTGGGCATATAAAGGCGGAGGCACCAGCAGCTATCATCCGCGTATGAT
GCTCAAGGTCCTGTTTTATGCCTACCTGACCAATATCTATTCCTGCCGCAAAATAGAAAAGGCCTTGCAGGAGAATATTCACTTCATGTGGTTGTCCGGT
AATAGTACTCCCGATTTCCGTACAATCAATGATTTCCGTGGCAAACGTTTAAAAGAACACATAAAATCGTTGTTTTCAGCCATTGTTCTACTACTACAGG
AATCCGGCTATGTCAGTTTGGATGTACAGTATATCGATGGCACCAAAGTGGAATCGGCATCCAACCGCTACACTTTTGTCTGGCGTGGCAGCGTGGAAAA
GAACAAGGCAAAACTGGAATCGAAAATACAGGCAATCCTTAGTGAGGTTGACAGACATATCGAACAGGACAAACAGGAAAGGACCCCGGATGCCTTACCG
GATATGGATTCCTGTGGCTTGAGGGAAAAAGTGAGCGCTTTAAACAAACGGCTCTCCGGGATGAACAAGGCTGAGCAGAAGCAAGTCAGAAAGCTACAGG
AAGAATATCTGCCCCGCCTTGCCAAATATGAATCGCAATTAGAGAAATTAGGGGACCGTAATTCTTTCAGTAAGACCGATGAGGATGCCACCTTCATGCG
CATGAAGGAGGATCATATGAAAAACGGGCAATTGAAACCCGCCTATAACATACAGATTGCTACAGAGAATCAGTTTATTACAAACCTAGGGATTTACAGG
CGCGCCGGAGATACGGGAACTCTAATTTCTTTTTTGAAAGATTTTCGAGAGACTTATCATAGGCAATCCTCTATAGTAGTGGCCGATACCGGTTATGGAA
GCGAACAAAACTACGAGTTTATGGAGAATGCGAGTATAGAGGCTTTTGTCAAGTACAATTATTTCCACAAAGAGCAGAAGCGTGCATGGAAGAAGGATGC
TTTTGCCATACAGAACCTTTACTATAATCAGGAACAGGATTACTACGTATGCCCGATGGGACAACATCTGGAACATACAGGTCAAAGGAAAAGCAAGTCC
GATTTGGGATATGTATCCGTACTGAAGCGTTATCAGGCACAGAACTGTGAGGGTTGCCCGCTGAAATCTCAATGTCATAAATCAAAAACTAACCGGATCA
TAGAAGTTAACTATAACCTTAACAGGCATAAACAAAAAACACGGGAAAAACTCATGAGTGAGGAAGGTATTTATCATCGGGGCAGACGATGTATAGAACC
GGAAGCTGTCTTTGCGCAGATAAAGCATAACTCGGCATGGAACCGGTTTAGATTAAGAGGGTTGGAGAAGGTAAAAACAGAGTTTACCCTGGCTGCTATT
GCACATAATCTAAGGAAACTGGCTAAAAAAGTCAGTGCTCTTTTCTTTTTTACTTATTTCTGTAGGATAACTTCTCGGAAAAAGATAATTGAGAAAAACA
AAGATGGTTTTAAAATAAAAATGGATAATAGAAGAGCGGCATAACAAAAAAAAGAAGGCATCCTTTTCAGACACCTTCCGGGTGCTTCGTTTCATTACGA
CCCCAGGAATATTGTCTCCGAAATATTGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1632 bp543 aa1131744+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKIVFKELTSNQNVLFPVSLSEKIAPNHPVRVVNSVVDALDISCLLWAYKGGGTSSYHPRMMLKVLFYAYLTNIYSCRKIEKALQENIHFMWLSGNSTP
DFRTINDFRGKRLKEHIKSLFSAIVLLLQESGYVSLDVQYIDGTKVESASNRYTFVWRGSVEKNKAKLESKIQAILSEVDRHIEQDKQERTPDALPDMDS
CGLREKVSALNKRLSGMNKAEQKQVRKLQEEYLPRLAKYESQLEKLGDRNSFSKTDEDATFMRMKEDHMKNGQLKPAYNIQIATENQFITNLGIYRRAGD
TGTLISFLKDFRETYHRQSSIVVADTGYGSEQNYEFMENASIEAFVKYNYFHKEQKRAWKKDAFAIQNLYYNQEQDYYVCPMGQHLEHTGQRKSKSDLGY
VSVLKRYQAQNCEGCPLKSQCHKSKTNRIIEVNYNLNRHKQKTREKLMSEEGIYHRGRRCIEPEAVFAQIKHNSAWNRFRLRGLEKVKTEFTLAAIAHNL
RKLAKKVSALFFFTYFCRITSRKKIIEKNKDGFKIKMDNRRAA

 

Blast result :
Comments
ISBf5 is 70% aa similar to ISBthe2. There is only one copy in Bacteroides fragilis YCH46 genome at coordinates : 4838077-4839906.
References
1] ISfinder annotation (2005)
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924