ISBf5
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006347 | ND | Bacteroides fragilis | Bacteroides fragilis YCH46 |
DNA section
IS Length : 1830 bp
Ends
IR Length : 7/8
IRL : CACAATTTCAGTGGTAAAAGGGGCTGTCCAAAAAGTCGGATAGCCCCTTT
IRR : CACAATATTTCGGAGACAATATTCCTGGGGTCGTAATGAAACGAAGCACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CACAATTTCAGTGGTAAAAGGGGCTGTCCAAAAAGTCGGATAGCCCCTTTTGCTATTGTTTATTTCGTTAAAAATCAGTATCTTACCGTTGCAACAAATA
AACATTATAGCAATGGCTAAGATAGTATTTAAAGAGTTAACTTCCAACCAAAATGTACTTTTTCCTGTCAGTTTATCGGAAAAGATCGCTCCCAATCATC
CCGTTCGTGTTGTAAACAGTGTTGTAGACGCATTGGATATTAGTTGTCTGCTTTGGGCATATAAAGGCGGAGGCACCAGCAGCTATCATCCGCGTATGAT
GCTCAAGGTCCTGTTTTATGCCTACCTGACCAATATCTATTCCTGCCGCAAAATAGAAAAGGCCTTGCAGGAGAATATTCACTTCATGTGGTTGTCCGGT
AATAGTACTCCCGATTTCCGTACAATCAATGATTTCCGTGGCAAACGTTTAAAAGAACACATAAAATCGTTGTTTTCAGCCATTGTTCTACTACTACAGG
AATCCGGCTATGTCAGTTTGGATGTACAGTATATCGATGGCACCAAAGTGGAATCGGCATCCAACCGCTACACTTTTGTCTGGCGTGGCAGCGTGGAAAA
GAACAAGGCAAAACTGGAATCGAAAATACAGGCAATCCTTAGTGAGGTTGACAGACATATCGAACAGGACAAACAGGAAAGGACCCCGGATGCCTTACCG
GATATGGATTCCTGTGGCTTGAGGGAAAAAGTGAGCGCTTTAAACAAACGGCTCTCCGGGATGAACAAGGCTGAGCAGAAGCAAGTCAGAAAGCTACAGG
AAGAATATCTGCCCCGCCTTGCCAAATATGAATCGCAATTAGAGAAATTAGGGGACCGTAATTCTTTCAGTAAGACCGATGAGGATGCCACCTTCATGCG
CATGAAGGAGGATCATATGAAAAACGGGCAATTGAAACCCGCCTATAACATACAGATTGCTACAGAGAATCAGTTTATTACAAACCTAGGGATTTACAGG
CGCGCCGGAGATACGGGAACTCTAATTTCTTTTTTGAAAGATTTTCGAGAGACTTATCATAGGCAATCCTCTATAGTAGTGGCCGATACCGGTTATGGAA
GCGAACAAAACTACGAGTTTATGGAGAATGCGAGTATAGAGGCTTTTGTCAAGTACAATTATTTCCACAAAGAGCAGAAGCGTGCATGGAAGAAGGATGC
TTTTGCCATACAGAACCTTTACTATAATCAGGAACAGGATTACTACGTATGCCCGATGGGACAACATCTGGAACATACAGGTCAAAGGAAAAGCAAGTCC
GATTTGGGATATGTATCCGTACTGAAGCGTTATCAGGCACAGAACTGTGAGGGTTGCCCGCTGAAATCTCAATGTCATAAATCAAAAACTAACCGGATCA
TAGAAGTTAACTATAACCTTAACAGGCATAAACAAAAAACACGGGAAAAACTCATGAGTGAGGAAGGTATTTATCATCGGGGCAGACGATGTATAGAACC
GGAAGCTGTCTTTGCGCAGATAAAGCATAACTCGGCATGGAACCGGTTTAGATTAAGAGGGTTGGAGAAGGTAAAAACAGAGTTTACCCTGGCTGCTATT
GCACATAATCTAAGGAAACTGGCTAAAAAAGTCAGTGCTCTTTTCTTTTTTACTTATTTCTGTAGGATAACTTCTCGGAAAAAGATAATTGAGAAAAACA
AAGATGGTTTTAAAATAAAAATGGATAATAGAAGAGCGGCATAACAAAAAAAAGAAGGCATCCTTTTCAGACACCTTCCGGGTGCTTCGTTTCATTACGA
CCCCAGGAATATTGTCTCCGAAATATTGTG
AACATTATAGCAATGGCTAAGATAGTATTTAAAGAGTTAACTTCCAACCAAAATGTACTTTTTCCTGTCAGTTTATCGGAAAAGATCGCTCCCAATCATC
CCGTTCGTGTTGTAAACAGTGTTGTAGACGCATTGGATATTAGTTGTCTGCTTTGGGCATATAAAGGCGGAGGCACCAGCAGCTATCATCCGCGTATGAT
GCTCAAGGTCCTGTTTTATGCCTACCTGACCAATATCTATTCCTGCCGCAAAATAGAAAAGGCCTTGCAGGAGAATATTCACTTCATGTGGTTGTCCGGT
AATAGTACTCCCGATTTCCGTACAATCAATGATTTCCGTGGCAAACGTTTAAAAGAACACATAAAATCGTTGTTTTCAGCCATTGTTCTACTACTACAGG
AATCCGGCTATGTCAGTTTGGATGTACAGTATATCGATGGCACCAAAGTGGAATCGGCATCCAACCGCTACACTTTTGTCTGGCGTGGCAGCGTGGAAAA
GAACAAGGCAAAACTGGAATCGAAAATACAGGCAATCCTTAGTGAGGTTGACAGACATATCGAACAGGACAAACAGGAAAGGACCCCGGATGCCTTACCG
GATATGGATTCCTGTGGCTTGAGGGAAAAAGTGAGCGCTTTAAACAAACGGCTCTCCGGGATGAACAAGGCTGAGCAGAAGCAAGTCAGAAAGCTACAGG
AAGAATATCTGCCCCGCCTTGCCAAATATGAATCGCAATTAGAGAAATTAGGGGACCGTAATTCTTTCAGTAAGACCGATGAGGATGCCACCTTCATGCG
CATGAAGGAGGATCATATGAAAAACGGGCAATTGAAACCCGCCTATAACATACAGATTGCTACAGAGAATCAGTTTATTACAAACCTAGGGATTTACAGG
CGCGCCGGAGATACGGGAACTCTAATTTCTTTTTTGAAAGATTTTCGAGAGACTTATCATAGGCAATCCTCTATAGTAGTGGCCGATACCGGTTATGGAA
GCGAACAAAACTACGAGTTTATGGAGAATGCGAGTATAGAGGCTTTTGTCAAGTACAATTATTTCCACAAAGAGCAGAAGCGTGCATGGAAGAAGGATGC
TTTTGCCATACAGAACCTTTACTATAATCAGGAACAGGATTACTACGTATGCCCGATGGGACAACATCTGGAACATACAGGTCAAAGGAAAAGCAAGTCC
GATTTGGGATATGTATCCGTACTGAAGCGTTATCAGGCACAGAACTGTGAGGGTTGCCCGCTGAAATCTCAATGTCATAAATCAAAAACTAACCGGATCA
TAGAAGTTAACTATAACCTTAACAGGCATAAACAAAAAACACGGGAAAAACTCATGAGTGAGGAAGGTATTTATCATCGGGGCAGACGATGTATAGAACC
GGAAGCTGTCTTTGCGCAGATAAAGCATAACTCGGCATGGAACCGGTTTAGATTAAGAGGGTTGGAGAAGGTAAAAACAGAGTTTACCCTGGCTGCTATT
GCACATAATCTAAGGAAACTGGCTAAAAAAGTCAGTGCTCTTTTCTTTTTTACTTATTTCTGTAGGATAACTTCTCGGAAAAAGATAATTGAGAAAAACA
AAGATGGTTTTAAAATAAAAATGGATAATAGAAGAGCGGCATAACAAAAAAAAGAAGGCATCCTTTTCAGACACCTTCCGGGTGCTTCGTTTCATTACGA
CCCCAGGAATATTGTCTCCGAAATATTGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1632 bp | 543 aa | 113 | 1744 | + | No |
Chemistry : DDE
ORF sequence :
MAKIVFKELTSNQNVLFPVSLSEKIAPNHPVRVVNSVVDALDISCLLWAYKGGGTSSYHPRMMLKVLFYAYLTNIYSCRKIEKALQENIHFMWLSGNSTP
DFRTINDFRGKRLKEHIKSLFSAIVLLLQESGYVSLDVQYIDGTKVESASNRYTFVWRGSVEKNKAKLESKIQAILSEVDRHIEQDKQERTPDALPDMDS
CGLREKVSALNKRLSGMNKAEQKQVRKLQEEYLPRLAKYESQLEKLGDRNSFSKTDEDATFMRMKEDHMKNGQLKPAYNIQIATENQFITNLGIYRRAGD
TGTLISFLKDFRETYHRQSSIVVADTGYGSEQNYEFMENASIEAFVKYNYFHKEQKRAWKKDAFAIQNLYYNQEQDYYVCPMGQHLEHTGQRKSKSDLGY
VSVLKRYQAQNCEGCPLKSQCHKSKTNRIIEVNYNLNRHKQKTREKLMSEEGIYHRGRRCIEPEAVFAQIKHNSAWNRFRLRGLEKVKTEFTLAAIAHNL
RKLAKKVSALFFFTYFCRITSRKKIIEKNKDGFKIKMDNRRAA
DFRTINDFRGKRLKEHIKSLFSAIVLLLQESGYVSLDVQYIDGTKVESASNRYTFVWRGSVEKNKAKLESKIQAILSEVDRHIEQDKQERTPDALPDMDS
CGLREKVSALNKRLSGMNKAEQKQVRKLQEEYLPRLAKYESQLEKLGDRNSFSKTDEDATFMRMKEDHMKNGQLKPAYNIQIATENQFITNLGIYRRAGD
TGTLISFLKDFRETYHRQSSIVVADTGYGSEQNYEFMENASIEAFVKYNYFHKEQKRAWKKDAFAIQNLYYNQEQDYYVCPMGQHLEHTGQRKSKSDLGY
VSVLKRYQAQNCEGCPLKSQCHKSKTNRIIEVNYNLNRHKQKTREKLMSEEGIYHRGRRCIEPEAVFAQIKHNSAWNRFRLRGLEKVKTEFTLAAIAHNL
RKLAKKVSALFFFTYFCRITSRKKIIEKNKDGFKIKMDNRRAA
Blast result :
Comments
ISBf5 is 70% aa similar to ISBthe2. There is only one copy in Bacteroides fragilis YCH46 genome at coordinates : 4838077-4839906.
References
1] ISfinder annotation (2005)
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924