ISBf4

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006347 ND Bacteroides fragilis
Bacteroides fragilis YCH46
DNA section
IS Length : 1842 bp

Ends


IR Length : 15/16

IRL : GAGGGTGTGTCAAAATGCATACCCTCTTTTTTTTATGACAAAGCCCCGAC
IRR : GAGGATGTGTCAAAATGATGCATCCTCTTTTTCGTTATAGAACCATCGGT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGGGTGTGTCAAAATGCATACCCTCTTTTTTTTATGACAAAGCCCCGACTTTCCCAAGCCGAGGCTTTGTTATTACCTAAAGATTTTGTATCTTTAAAC
ATAAGCAAAGTAATATGGCAAAGATACATTTTCGTTCTTACAATCCCAATCAAATCGTCCTTTTCCCACAAAGAATAGATGAAAATATTCCATCGGACGA
TCCTGTACGTATTCTGAATGCTATGGTTGATAGCTTTGACCTCAGTTCATTTCATAAATTGTATAAGGAGTCCGGGCGTTCTGCCTATCACCCGCGAATG
ATGCTCAAAGCTGTTTTGTATGCCTATATGAACAATATCTATTCCTGTCGTAAAATAGAAAAGTCCCTGCTGCGTGACATTCATTTCATATGGCTTGCCG
GTTATGAAAAACCTGATTACCGGACTATAAACCGTTTCCGTAACCGTGTCAAGGATGAGATAAACGGAATATTCACCCAGATAGTCCTCATCCTTGCCTC
CAAAGGATTCATAAGTCTTGATGTTGAATATGTTGACGGCACAAAGATTGAATCAAAAGCCAACAGATACACCTTTGTATGGCGTAAGAACGTAGAACGT
AACCGCGCCAGGCTTCTTGAAAAGATACGTATTCTTCTACAGCAGATTGATGATGTCGTGGCACAGGAGGATGCCTGCATTGAGAATACCGCTACAGAGT
TTACTCCTTCCATGCTGACAGATATGATATCAGAGTTAAAAGCCTCCCTTGAAAATGTCCCAACCGCATCGGATAAGGAAGAAAAGAAAACGAAAAGACA
GAAGGCAAAGCAAATCAATCTATTGGAATCACACTGCAAGAAACTTGCCGAATATAACAGGCACATGAGAATACTCGGCAAACGGAATTCTTATTCCAAA
ACAGATCCTGATGCTACATTTATGCATATGAAGGAAGACCCTATGGGAAACGGGCAATTAAAACCGGGATATAATCTGCAAATCGGAACCGAAAACCAGT
TTATGCTCGATTTTGGACTCTTCCACAATCCAACAGACACTCTAACATTGATTCCGTTCGAAAATTCGTTTCATGAACGTTACAACCGTTTCCCATTGGA
AGAGGTTGCCGATTCCGGTTATGGTTCGGAAGAGAACTATCGCTTTATGGAAGAAAACGGAATAGAGGCGTATGTCAAGTACAATTTCTTTCATAAGGAG
CAAAGAGCAGACAAATATGTGACAAATCCTTTCAAACAAGAAAACCTATATTATAACAAGGAGAAAGATTATTATGTCTGTCCCATGGGACAACATATGA
AGCGGACAGGTGTACGGCATTATAAAACGGAAAGTGGATATATTGCAGAAAGCATCGCCTATAGGGCTGCAAGATGTGAGGGATGTCCTCTCAGATGTAT
GTGTTTCAGCTCAAAATCACCAGGACGTACCATAGAAGTCAATCACAGGCTGAAAGAATATAAACAAAAAGCGCGTGAAAGACTTACCTCAGAGAAAGGT
AGCAAACATAGAGGGCAAAGATGCATAGAGCCTGAAGCCGTCTTTGGACAAATCAAATACGACATGGGATACAAAAGGTTCAGGCATTTTGGAAAAGACA
AGGTCACAATGGACTTTGCCTTCTTTGCCATTGCTTTTAATATAAAGAAAATGTGTGCTAAAATCAAGAATGAGAAGATGACAGACAAAAATTATCAAAA
TATAAGGGTGGCGTAAGCCATCTACGGCATATTGTACCACCAGAAAGCATGGACACAGGGAAAAATAAATCATACTCTATGAAAAATGAGAAACCGATGG
TTCTATAACGAAAAAGAGGATGCATCATTTTGACACATCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1602 bp533 aa1151716+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKIHFRSYNPNQIVLFPQRIDENIPSDDPVRILNAMVDSFDLSSFHKLYKESGRSAYHPRMMLKAVLYAYMNNIYSCRKIEKSLLRDIHFIWLAGYEKP
DYRTINRFRNRVKDEINGIFTQIVLILASKGFISLDVEYVDGTKIESKANRYTFVWRKNVERNRARLLEKIRILLQQIDDVVAQEDACIENTATEFTPSM
LTDMISELKASLENVPTASDKEEKKTKRQKAKQINLLESHCKKLAEYNRHMRILGKRNSYSKTDPDATFMHMKEDPMGNGQLKPGYNLQIGTENQFMLDF
GLFHNPTDTLTLIPFENSFHERYNRFPLEEVADSGYGSEENYRFMEENGIEAYVKYNFFHKEQRADKYVTNPFKQENLYYNKEKDYYVCPMGQHMKRTGV
RHYKTESGYIAESIAYRAARCEGCPLRCMCFSSKSPGRTIEVNHRLKEYKQKARERLTSEKGSKHRGQRCIEPEAVFGQIKYDMGYKRFRHFGKDKVTMD
FAFFAIAFNIKKMCAKIKNEKMTDKNYQNIRVA

 

Blast result :
Comments
ISBf4 is 83% aa similar to ISBthe2. There is only one copy in Bacteroides fragilis YCH46 genome at coordinates ccplt (3226256-3228097).
References
1] ISfinder annotation (2005)
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924