ISBf4
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006347 | ND | Bacteroides fragilis | Bacteroides fragilis YCH46 |
DNA section
IS Length : 1842 bp
Ends
IR Length : 15/16
IRL : GAGGGTGTGTCAAAATGCATACCCTCTTTTTTTTATGACAAAGCCCCGAC
IRR : GAGGATGTGTCAAAATGATGCATCCTCTTTTTCGTTATAGAACCATCGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGGGTGTGTCAAAATGCATACCCTCTTTTTTTTATGACAAAGCCCCGACTTTCCCAAGCCGAGGCTTTGTTATTACCTAAAGATTTTGTATCTTTAAAC
ATAAGCAAAGTAATATGGCAAAGATACATTTTCGTTCTTACAATCCCAATCAAATCGTCCTTTTCCCACAAAGAATAGATGAAAATATTCCATCGGACGA
TCCTGTACGTATTCTGAATGCTATGGTTGATAGCTTTGACCTCAGTTCATTTCATAAATTGTATAAGGAGTCCGGGCGTTCTGCCTATCACCCGCGAATG
ATGCTCAAAGCTGTTTTGTATGCCTATATGAACAATATCTATTCCTGTCGTAAAATAGAAAAGTCCCTGCTGCGTGACATTCATTTCATATGGCTTGCCG
GTTATGAAAAACCTGATTACCGGACTATAAACCGTTTCCGTAACCGTGTCAAGGATGAGATAAACGGAATATTCACCCAGATAGTCCTCATCCTTGCCTC
CAAAGGATTCATAAGTCTTGATGTTGAATATGTTGACGGCACAAAGATTGAATCAAAAGCCAACAGATACACCTTTGTATGGCGTAAGAACGTAGAACGT
AACCGCGCCAGGCTTCTTGAAAAGATACGTATTCTTCTACAGCAGATTGATGATGTCGTGGCACAGGAGGATGCCTGCATTGAGAATACCGCTACAGAGT
TTACTCCTTCCATGCTGACAGATATGATATCAGAGTTAAAAGCCTCCCTTGAAAATGTCCCAACCGCATCGGATAAGGAAGAAAAGAAAACGAAAAGACA
GAAGGCAAAGCAAATCAATCTATTGGAATCACACTGCAAGAAACTTGCCGAATATAACAGGCACATGAGAATACTCGGCAAACGGAATTCTTATTCCAAA
ACAGATCCTGATGCTACATTTATGCATATGAAGGAAGACCCTATGGGAAACGGGCAATTAAAACCGGGATATAATCTGCAAATCGGAACCGAAAACCAGT
TTATGCTCGATTTTGGACTCTTCCACAATCCAACAGACACTCTAACATTGATTCCGTTCGAAAATTCGTTTCATGAACGTTACAACCGTTTCCCATTGGA
AGAGGTTGCCGATTCCGGTTATGGTTCGGAAGAGAACTATCGCTTTATGGAAGAAAACGGAATAGAGGCGTATGTCAAGTACAATTTCTTTCATAAGGAG
CAAAGAGCAGACAAATATGTGACAAATCCTTTCAAACAAGAAAACCTATATTATAACAAGGAGAAAGATTATTATGTCTGTCCCATGGGACAACATATGA
AGCGGACAGGTGTACGGCATTATAAAACGGAAAGTGGATATATTGCAGAAAGCATCGCCTATAGGGCTGCAAGATGTGAGGGATGTCCTCTCAGATGTAT
GTGTTTCAGCTCAAAATCACCAGGACGTACCATAGAAGTCAATCACAGGCTGAAAGAATATAAACAAAAAGCGCGTGAAAGACTTACCTCAGAGAAAGGT
AGCAAACATAGAGGGCAAAGATGCATAGAGCCTGAAGCCGTCTTTGGACAAATCAAATACGACATGGGATACAAAAGGTTCAGGCATTTTGGAAAAGACA
AGGTCACAATGGACTTTGCCTTCTTTGCCATTGCTTTTAATATAAAGAAAATGTGTGCTAAAATCAAGAATGAGAAGATGACAGACAAAAATTATCAAAA
TATAAGGGTGGCGTAAGCCATCTACGGCATATTGTACCACCAGAAAGCATGGACACAGGGAAAAATAAATCATACTCTATGAAAAATGAGAAACCGATGG
TTCTATAACGAAAAAGAGGATGCATCATTTTGACACATCCTC
ATAAGCAAAGTAATATGGCAAAGATACATTTTCGTTCTTACAATCCCAATCAAATCGTCCTTTTCCCACAAAGAATAGATGAAAATATTCCATCGGACGA
TCCTGTACGTATTCTGAATGCTATGGTTGATAGCTTTGACCTCAGTTCATTTCATAAATTGTATAAGGAGTCCGGGCGTTCTGCCTATCACCCGCGAATG
ATGCTCAAAGCTGTTTTGTATGCCTATATGAACAATATCTATTCCTGTCGTAAAATAGAAAAGTCCCTGCTGCGTGACATTCATTTCATATGGCTTGCCG
GTTATGAAAAACCTGATTACCGGACTATAAACCGTTTCCGTAACCGTGTCAAGGATGAGATAAACGGAATATTCACCCAGATAGTCCTCATCCTTGCCTC
CAAAGGATTCATAAGTCTTGATGTTGAATATGTTGACGGCACAAAGATTGAATCAAAAGCCAACAGATACACCTTTGTATGGCGTAAGAACGTAGAACGT
AACCGCGCCAGGCTTCTTGAAAAGATACGTATTCTTCTACAGCAGATTGATGATGTCGTGGCACAGGAGGATGCCTGCATTGAGAATACCGCTACAGAGT
TTACTCCTTCCATGCTGACAGATATGATATCAGAGTTAAAAGCCTCCCTTGAAAATGTCCCAACCGCATCGGATAAGGAAGAAAAGAAAACGAAAAGACA
GAAGGCAAAGCAAATCAATCTATTGGAATCACACTGCAAGAAACTTGCCGAATATAACAGGCACATGAGAATACTCGGCAAACGGAATTCTTATTCCAAA
ACAGATCCTGATGCTACATTTATGCATATGAAGGAAGACCCTATGGGAAACGGGCAATTAAAACCGGGATATAATCTGCAAATCGGAACCGAAAACCAGT
TTATGCTCGATTTTGGACTCTTCCACAATCCAACAGACACTCTAACATTGATTCCGTTCGAAAATTCGTTTCATGAACGTTACAACCGTTTCCCATTGGA
AGAGGTTGCCGATTCCGGTTATGGTTCGGAAGAGAACTATCGCTTTATGGAAGAAAACGGAATAGAGGCGTATGTCAAGTACAATTTCTTTCATAAGGAG
CAAAGAGCAGACAAATATGTGACAAATCCTTTCAAACAAGAAAACCTATATTATAACAAGGAGAAAGATTATTATGTCTGTCCCATGGGACAACATATGA
AGCGGACAGGTGTACGGCATTATAAAACGGAAAGTGGATATATTGCAGAAAGCATCGCCTATAGGGCTGCAAGATGTGAGGGATGTCCTCTCAGATGTAT
GTGTTTCAGCTCAAAATCACCAGGACGTACCATAGAAGTCAATCACAGGCTGAAAGAATATAAACAAAAAGCGCGTGAAAGACTTACCTCAGAGAAAGGT
AGCAAACATAGAGGGCAAAGATGCATAGAGCCTGAAGCCGTCTTTGGACAAATCAAATACGACATGGGATACAAAAGGTTCAGGCATTTTGGAAAAGACA
AGGTCACAATGGACTTTGCCTTCTTTGCCATTGCTTTTAATATAAAGAAAATGTGTGCTAAAATCAAGAATGAGAAGATGACAGACAAAAATTATCAAAA
TATAAGGGTGGCGTAAGCCATCTACGGCATATTGTACCACCAGAAAGCATGGACACAGGGAAAAATAAATCATACTCTATGAAAAATGAGAAACCGATGG
TTCTATAACGAAAAAGAGGATGCATCATTTTGACACATCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1602 bp | 533 aa | 115 | 1716 | + | No |
Chemistry : DDE
ORF sequence :
MAKIHFRSYNPNQIVLFPQRIDENIPSDDPVRILNAMVDSFDLSSFHKLYKESGRSAYHPRMMLKAVLYAYMNNIYSCRKIEKSLLRDIHFIWLAGYEKP
DYRTINRFRNRVKDEINGIFTQIVLILASKGFISLDVEYVDGTKIESKANRYTFVWRKNVERNRARLLEKIRILLQQIDDVVAQEDACIENTATEFTPSM
LTDMISELKASLENVPTASDKEEKKTKRQKAKQINLLESHCKKLAEYNRHMRILGKRNSYSKTDPDATFMHMKEDPMGNGQLKPGYNLQIGTENQFMLDF
GLFHNPTDTLTLIPFENSFHERYNRFPLEEVADSGYGSEENYRFMEENGIEAYVKYNFFHKEQRADKYVTNPFKQENLYYNKEKDYYVCPMGQHMKRTGV
RHYKTESGYIAESIAYRAARCEGCPLRCMCFSSKSPGRTIEVNHRLKEYKQKARERLTSEKGSKHRGQRCIEPEAVFGQIKYDMGYKRFRHFGKDKVTMD
FAFFAIAFNIKKMCAKIKNEKMTDKNYQNIRVA
DYRTINRFRNRVKDEINGIFTQIVLILASKGFISLDVEYVDGTKIESKANRYTFVWRKNVERNRARLLEKIRILLQQIDDVVAQEDACIENTATEFTPSM
LTDMISELKASLENVPTASDKEEKKTKRQKAKQINLLESHCKKLAEYNRHMRILGKRNSYSKTDPDATFMHMKEDPMGNGQLKPGYNLQIGTENQFMLDF
GLFHNPTDTLTLIPFENSFHERYNRFPLEEVADSGYGSEENYRFMEENGIEAYVKYNFFHKEQRADKYVTNPFKQENLYYNKEKDYYVCPMGQHMKRTGV
RHYKTESGYIAESIAYRAARCEGCPLRCMCFSSKSPGRTIEVNHRLKEYKQKARERLTSEKGSKHRGQRCIEPEAVFGQIKYDMGYKRFRHFGKDKVTMD
FAFFAIAFNIKKMCAKIKNEKMTDKNYQNIRVA
Blast result :
Comments
ISBf4 is 83% aa similar to ISBthe2. There is only one copy in Bacteroides fragilis YCH46 genome at coordinates ccplt (3226256-3228097).
References
1] ISfinder annotation (2005)
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924