ISBf3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006297 ND Bacteroides fragilis
Bacteroides fragilis YCH46 plasmid pBFY46
DNA section
IS Length : 1845 bp

Ends


IR Length : 30/34

IRL : GAGGTTGTGTCAAAACGCTGACACAGCCTTTTTTTATGCGCAAAGCCCAG
IRR : GAGGTTGTGTCAAAACGTTGGCACAACCTCTTTTATATTTTACAGTTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
CACACTAAAAATATTTTTTTATTC4

DNA sequence

GAGGTTGTGTCAAAACGCTGACACAGCCTTTTTTTATGCGCAAAGCCCAGACTTTCTCAAGCCCGGGCTTTGTTATTACCCAAAGTTTTCGTATCTTTAG
GTATAAAGTTTTTCGTTATGGCAAAGTTACATTTTCGTCCTTACATTCCCAACCAAACCGTTCTTTTTCCACAAAGAATTGATGAAAACATAGCTGCGAC
CGACCCGGTCCGCATCGTGAATGCTGTTATTGACAATCTCAATCTTGAGAGTTTCAAGAAGCTTTATAAGGAAACGGGCCGTTGTCCTTATCATCCTAAA
ATGATGCTTAAGGTGATAATCTACGCCTACATGAATAATATCTATTCTTGCCGTAAAATAGAGAAGTACCTCCTTCGTGACATTCATTATATTTGGCTTG
CCGGTAATGAGCATCCGGATTTTATCACGATCAACCGTTTTCGCAACCGTGTAAAGGAGGAAATAAATAATGTATTTACCCAGTTGGTTCTTGTCCTTGC
CGATAAAGGTTTCATCAGCCTTGATGTGGAGTATATCGACGGCACCAAGATTGAATCCAAAGCCAACAAATATACTTTTGTCTGGCGCAAGACAGTCGAA
CGGAACCGTACGATACTAATGGATAAAATCCGTATTCTCTTGGAGCAGGTGGATGAAGCCATTGCACAGGAGAACTCTATAAAAGACACATCCGTGGAGT
TTACTCCCTGCAGGCTCTCTGACATAGTGGATGAACTTAAAGAAGCCCTGGAACACCAGCCTGCAACAAAGGATAAGGAAGAAAAGAAAGCCCTGCGCAA
AAAGAAGAAGCAGGTCATGGAACTTGAAGGGTATCGTGACAAGCTGATAGAATACGACAATCACCTTGATACCCTTGGAGAACGCAACTCCTATTCCAAG
ACCGATCCTGGTGCCACATTCATGCGCATGAAAGAAGATGCCATGAAGAACGGGCAGACCAAACCCGGATATAATCTGCAAATAGGTACTGAAAACCAAT
TCATCACAGACTTCCGTCTGTTTCCCAACCCTACCGATACACTGACCCTCATACCTTTTTTCCACTCTTTCCAATACCGCTATAACCGTTTACCGAATAT
CTGTGTGGCAGACTCCGGTTACGGTTCGGAAGAAAATTACCGGTTCATGCAGGAGAATGGGATAGAAGCCTTCATCAAGTACAATTACTTCCATAAAGAA
CAGCGTCCTCGTTATACTCCCAACCCGTTCCATGCCGAAAGTCTCCATTACAATGCCCAAGAGGATTATTACGTTTGTCCTATGGGACAGCACATGAACC
GTATAGGAACCAAACGTGACAAGACAGCGAGCGGATACATCATCGAAAGTGCCCGGTATAAAGCAAAAAGATGCGAAGGTTGCCCTTTGCGTGGCAGTTG
TTTTAAAGCTCGGGGGAACCGTATTATAGAAGTCAACCACCGATTAAATCAATACAAACGGCAGGCACGGGAAAGGTTGCTCTCAGAAGAAGGTATCAAG
CATAGAGGCAGGAGGTGTATAGAACCAGAGGCCGTGTTTGGACAAATGAAATACAACATGGCATACAGAAGATTCCGGCATGTGGGAGAAGACAAGGTTA
CAATGGACTTTGCTTTCTTTGCTATAGCCTTTAATATCAAAAAAATGTGTGCTAAACTGATAAAAGAAGGAAAGGGGCTCATTACAGTTGCCAAATATAT
GTTTATGGGACTATTTATAACCCGATATAATTGGAATATAGCAACTTGTTGCCAAATGCATGAGGAAAAAGCAGCATAGCCAAAAGAAAATATAGCAGAA
CTGTAAAATATAAAAGAGGTTGTGCCAACGTTTTGACACAACCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1662 bp553 aa1181779+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKLHFRPYIPNQTVLFPQRIDENIAATDPVRIVNAVIDNLNLESFKKLYKETGRCPYHPKMMLKVIIYAYMNNIYSCRKIEKYLLRDIHYIWLAGNEHP
DFITINRFRNRVKEEINNVFTQLVLVLADKGFISLDVEYIDGTKIESKANKYTFVWRKTVERNRTILMDKIRILLEQVDEAIAQENSIKDTSVEFTPCRL
SDIVDELKEALEHQPATKDKEEKKALRKKKKQVMELEGYRDKLIEYDNHLDTLGERNSYSKTDPGATFMRMKEDAMKNGQTKPGYNLQIGTENQFITDFR
LFPNPTDTLTLIPFFHSFQYRYNRLPNICVADSGYGSEENYRFMQENGIEAFIKYNYFHKEQRPRYTPNPFHAESLHYNAQEDYYVCPMGQHMNRIGTKR
DKTASGYIIESARYKAKRCEGCPLRGSCFKARGNRIIEVNHRLNQYKRQARERLLSEEGIKHRGRRCIEPEAVFGQMKYNMAYRRFRHVGEDKVTMDFAF
FAIAFNIKKMCAKLIKEGKGLITVAKYMFMGLFITRYNWNIATCCQMHEEKAA

 

Blast result :
Comments
ISBf3 is 92% aa similar to ISBthe2. There is one copy in plasmid pBFY46 of Bacteroides fragilis YCH46 at coordinates : 1010-2854.
References
1] ISfinder annotation (2005)
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924