ISBf3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006297 | ND | Bacteroides fragilis | Bacteroides fragilis YCH46 plasmid pBFY46 |
DNA section
IS Length : 1845 bp
Ends
IR Length : 30/34
IRL : GAGGTTGTGTCAAAACGCTGACACAGCCTTTTTTTATGCGCAAAGCCCAG
IRR : GAGGTTGTGTCAAAACGTTGGCACAACCTCTTTTATATTTTACAGTTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACACTAAAA | ATAT | TTTTTTATTC | 4 |
DNA sequence
GAGGTTGTGTCAAAACGCTGACACAGCCTTTTTTTATGCGCAAAGCCCAGACTTTCTCAAGCCCGGGCTTTGTTATTACCCAAAGTTTTCGTATCTTTAG
GTATAAAGTTTTTCGTTATGGCAAAGTTACATTTTCGTCCTTACATTCCCAACCAAACCGTTCTTTTTCCACAAAGAATTGATGAAAACATAGCTGCGAC
CGACCCGGTCCGCATCGTGAATGCTGTTATTGACAATCTCAATCTTGAGAGTTTCAAGAAGCTTTATAAGGAAACGGGCCGTTGTCCTTATCATCCTAAA
ATGATGCTTAAGGTGATAATCTACGCCTACATGAATAATATCTATTCTTGCCGTAAAATAGAGAAGTACCTCCTTCGTGACATTCATTATATTTGGCTTG
CCGGTAATGAGCATCCGGATTTTATCACGATCAACCGTTTTCGCAACCGTGTAAAGGAGGAAATAAATAATGTATTTACCCAGTTGGTTCTTGTCCTTGC
CGATAAAGGTTTCATCAGCCTTGATGTGGAGTATATCGACGGCACCAAGATTGAATCCAAAGCCAACAAATATACTTTTGTCTGGCGCAAGACAGTCGAA
CGGAACCGTACGATACTAATGGATAAAATCCGTATTCTCTTGGAGCAGGTGGATGAAGCCATTGCACAGGAGAACTCTATAAAAGACACATCCGTGGAGT
TTACTCCCTGCAGGCTCTCTGACATAGTGGATGAACTTAAAGAAGCCCTGGAACACCAGCCTGCAACAAAGGATAAGGAAGAAAAGAAAGCCCTGCGCAA
AAAGAAGAAGCAGGTCATGGAACTTGAAGGGTATCGTGACAAGCTGATAGAATACGACAATCACCTTGATACCCTTGGAGAACGCAACTCCTATTCCAAG
ACCGATCCTGGTGCCACATTCATGCGCATGAAAGAAGATGCCATGAAGAACGGGCAGACCAAACCCGGATATAATCTGCAAATAGGTACTGAAAACCAAT
TCATCACAGACTTCCGTCTGTTTCCCAACCCTACCGATACACTGACCCTCATACCTTTTTTCCACTCTTTCCAATACCGCTATAACCGTTTACCGAATAT
CTGTGTGGCAGACTCCGGTTACGGTTCGGAAGAAAATTACCGGTTCATGCAGGAGAATGGGATAGAAGCCTTCATCAAGTACAATTACTTCCATAAAGAA
CAGCGTCCTCGTTATACTCCCAACCCGTTCCATGCCGAAAGTCTCCATTACAATGCCCAAGAGGATTATTACGTTTGTCCTATGGGACAGCACATGAACC
GTATAGGAACCAAACGTGACAAGACAGCGAGCGGATACATCATCGAAAGTGCCCGGTATAAAGCAAAAAGATGCGAAGGTTGCCCTTTGCGTGGCAGTTG
TTTTAAAGCTCGGGGGAACCGTATTATAGAAGTCAACCACCGATTAAATCAATACAAACGGCAGGCACGGGAAAGGTTGCTCTCAGAAGAAGGTATCAAG
CATAGAGGCAGGAGGTGTATAGAACCAGAGGCCGTGTTTGGACAAATGAAATACAACATGGCATACAGAAGATTCCGGCATGTGGGAGAAGACAAGGTTA
CAATGGACTTTGCTTTCTTTGCTATAGCCTTTAATATCAAAAAAATGTGTGCTAAACTGATAAAAGAAGGAAAGGGGCTCATTACAGTTGCCAAATATAT
GTTTATGGGACTATTTATAACCCGATATAATTGGAATATAGCAACTTGTTGCCAAATGCATGAGGAAAAAGCAGCATAGCCAAAAGAAAATATAGCAGAA
CTGTAAAATATAAAAGAGGTTGTGCCAACGTTTTGACACAACCTC
GTATAAAGTTTTTCGTTATGGCAAAGTTACATTTTCGTCCTTACATTCCCAACCAAACCGTTCTTTTTCCACAAAGAATTGATGAAAACATAGCTGCGAC
CGACCCGGTCCGCATCGTGAATGCTGTTATTGACAATCTCAATCTTGAGAGTTTCAAGAAGCTTTATAAGGAAACGGGCCGTTGTCCTTATCATCCTAAA
ATGATGCTTAAGGTGATAATCTACGCCTACATGAATAATATCTATTCTTGCCGTAAAATAGAGAAGTACCTCCTTCGTGACATTCATTATATTTGGCTTG
CCGGTAATGAGCATCCGGATTTTATCACGATCAACCGTTTTCGCAACCGTGTAAAGGAGGAAATAAATAATGTATTTACCCAGTTGGTTCTTGTCCTTGC
CGATAAAGGTTTCATCAGCCTTGATGTGGAGTATATCGACGGCACCAAGATTGAATCCAAAGCCAACAAATATACTTTTGTCTGGCGCAAGACAGTCGAA
CGGAACCGTACGATACTAATGGATAAAATCCGTATTCTCTTGGAGCAGGTGGATGAAGCCATTGCACAGGAGAACTCTATAAAAGACACATCCGTGGAGT
TTACTCCCTGCAGGCTCTCTGACATAGTGGATGAACTTAAAGAAGCCCTGGAACACCAGCCTGCAACAAAGGATAAGGAAGAAAAGAAAGCCCTGCGCAA
AAAGAAGAAGCAGGTCATGGAACTTGAAGGGTATCGTGACAAGCTGATAGAATACGACAATCACCTTGATACCCTTGGAGAACGCAACTCCTATTCCAAG
ACCGATCCTGGTGCCACATTCATGCGCATGAAAGAAGATGCCATGAAGAACGGGCAGACCAAACCCGGATATAATCTGCAAATAGGTACTGAAAACCAAT
TCATCACAGACTTCCGTCTGTTTCCCAACCCTACCGATACACTGACCCTCATACCTTTTTTCCACTCTTTCCAATACCGCTATAACCGTTTACCGAATAT
CTGTGTGGCAGACTCCGGTTACGGTTCGGAAGAAAATTACCGGTTCATGCAGGAGAATGGGATAGAAGCCTTCATCAAGTACAATTACTTCCATAAAGAA
CAGCGTCCTCGTTATACTCCCAACCCGTTCCATGCCGAAAGTCTCCATTACAATGCCCAAGAGGATTATTACGTTTGTCCTATGGGACAGCACATGAACC
GTATAGGAACCAAACGTGACAAGACAGCGAGCGGATACATCATCGAAAGTGCCCGGTATAAAGCAAAAAGATGCGAAGGTTGCCCTTTGCGTGGCAGTTG
TTTTAAAGCTCGGGGGAACCGTATTATAGAAGTCAACCACCGATTAAATCAATACAAACGGCAGGCACGGGAAAGGTTGCTCTCAGAAGAAGGTATCAAG
CATAGAGGCAGGAGGTGTATAGAACCAGAGGCCGTGTTTGGACAAATGAAATACAACATGGCATACAGAAGATTCCGGCATGTGGGAGAAGACAAGGTTA
CAATGGACTTTGCTTTCTTTGCTATAGCCTTTAATATCAAAAAAATGTGTGCTAAACTGATAAAAGAAGGAAAGGGGCTCATTACAGTTGCCAAATATAT
GTTTATGGGACTATTTATAACCCGATATAATTGGAATATAGCAACTTGTTGCCAAATGCATGAGGAAAAAGCAGCATAGCCAAAAGAAAATATAGCAGAA
CTGTAAAATATAAAAGAGGTTGTGCCAACGTTTTGACACAACCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1662 bp | 553 aa | 118 | 1779 | + | No |
Chemistry : DDE
ORF sequence :
MAKLHFRPYIPNQTVLFPQRIDENIAATDPVRIVNAVIDNLNLESFKKLYKETGRCPYHPKMMLKVIIYAYMNNIYSCRKIEKYLLRDIHYIWLAGNEHP
DFITINRFRNRVKEEINNVFTQLVLVLADKGFISLDVEYIDGTKIESKANKYTFVWRKTVERNRTILMDKIRILLEQVDEAIAQENSIKDTSVEFTPCRL
SDIVDELKEALEHQPATKDKEEKKALRKKKKQVMELEGYRDKLIEYDNHLDTLGERNSYSKTDPGATFMRMKEDAMKNGQTKPGYNLQIGTENQFITDFR
LFPNPTDTLTLIPFFHSFQYRYNRLPNICVADSGYGSEENYRFMQENGIEAFIKYNYFHKEQRPRYTPNPFHAESLHYNAQEDYYVCPMGQHMNRIGTKR
DKTASGYIIESARYKAKRCEGCPLRGSCFKARGNRIIEVNHRLNQYKRQARERLLSEEGIKHRGRRCIEPEAVFGQMKYNMAYRRFRHVGEDKVTMDFAF
FAIAFNIKKMCAKLIKEGKGLITVAKYMFMGLFITRYNWNIATCCQMHEEKAA
DFITINRFRNRVKEEINNVFTQLVLVLADKGFISLDVEYIDGTKIESKANKYTFVWRKTVERNRTILMDKIRILLEQVDEAIAQENSIKDTSVEFTPCRL
SDIVDELKEALEHQPATKDKEEKKALRKKKKQVMELEGYRDKLIEYDNHLDTLGERNSYSKTDPGATFMRMKEDAMKNGQTKPGYNLQIGTENQFITDFR
LFPNPTDTLTLIPFFHSFQYRYNRLPNICVADSGYGSEENYRFMQENGIEAFIKYNYFHKEQRPRYTPNPFHAESLHYNAQEDYYVCPMGQHMNRIGTKR
DKTASGYIIESARYKAKRCEGCPLRGSCFKARGNRIIEVNHRLNQYKRQARERLLSEEGIKHRGRRCIEPEAVFGQMKYNMAYRRFRHVGEDKVTMDFAF
FAIAFNIKKMCAKLIKEGKGLITVAKYMFMGLFITRYNWNIATCCQMHEEKAA
Blast result :
Comments
ISBf3 is 92% aa similar to ISBthe2. There is one copy in plasmid pBFY46 of Bacteroides fragilis YCH46 at coordinates : 1010-2854.
References
1] ISfinder annotation (2005)
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924
2] Kuwahara,T., Yamashita,A., Hirakawa,H., Nakayama,H., Toh,H., Okada,N., Kuhara,S., Hattori,M., Hayashi,T. and Ohnishi,Y. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (41), 14919-14924