ISBthe2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004663 | ND | Bacteroides thetaiotaomicron | Bacteroides thetaiotaomicron VPI-5482 |
DNA section
IS Length : 1849 bp
Ends
IR Length : 21/27
IRL : GAGGTTGTGTCAAAACGCTGGCACAACCTTTTTTTATGCACAAAGCCCAG
IRR : GGGGCTGTGTCAAAACTAAGGCACATCCCCTTCTTTTTTTAATATAAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAAATAAAA | AT | TTTTTTTATT | 2 |
DNA sequence
GAGGTTGTGTCAAAACGCTGGCACAACCTTTTTTTATGCACAAAGCCCAGACTTTCACAAGCCCGGGCTTTGTTATTACCCAAAGTTTTTGTATCTTTAG
GCATAAAGTTTTTCGTTATGGCAAAGTTACATTTTCGTCCTTACATTCCCAACCAAACAGTTCTTTTTCCCGGAAGAATTGATGAAAACATAGCAGCGAA
CGATCCGGTTCGCATAGTTCATACTGTTGTTGATAATCTCAATCTTGACAATTTCAAGAAGCTTTATAAAGCAACCGGTCGTTGTCCTTATCATCCTAAA
ATGATGCTTAAGGTGATTATTTACGCCTACATGAACAATATCTATTCGTGCCGCAAAATAGAGAAGCTTCTCCTACGTGATATTCATTATATCTGGCTTT
CCGGTAATGAACATCCGGATTTTATTACCATCAACCGTTTTCGAAACCGTGTAAAAGAGGAAATAAATACTGTATTCACGCAGTTGGTTCTTGTCCTTGC
CGACAAAGGTTTCATCAGCCTTGACGTAGAGTATATTGACGGTACCAAGATTGAGTCGAAAGCCAACAAATATACTTTTGTCTGGCGCAAGACAGTCGAA
AAGAACCGTACAAAGCTGATGGATAAGATCCGCATTCTCCTGAAGCAGGTGGATGAAGTCATAGCCCAAGAGAACTCCATGAAAGATACACCCGTAGAGT
TCACTCCCGCCATGCTCTCAGATATAGTGAATGAACTTAAAGAGGTGCTGGAACACCAGCCTGTAACAAAGGACAAGGAACAAAAGAAGGTCATCCGGGA
AAAGAAGAAACAGGTCCGGGAACTTGAGGAGTACCGTGACAAGTTGATAGAATACGACAACCATCTTGATACTCTTGGAGAACGCAACTCCTACTCCAAG
ACCGATCCTGATGCCACCTTCATGCGCATGAAAGAAGACGCCATGAGAAACGGACAGACCAAACCCGGATATAATCTGCAAATAGGTACCGAGAACCAAT
TCCTCATAGACTTCCGACTGTTTCCCAACCCAACCGATACACTGACCCTCATACCTTTCTTCCACTCCTTTGAGCAACGCTATAACCGCTTACCAACTGT
CGGTGTGGCAGACTCCGGTTACGGCTCGGAAGAAAATTATCGGTTCATGCAAGATAATGGGATAGAAGCCTTTGTCAAGTACAACTACTTCCATAAAGAA
CAGCGTCCCCGTTATACCCCCAATCCATTCCATGCGGAGAGTCTCCATTACAATGCGGGGGAGGATTATTACGTTTGTCCTATGGGGCAGCACATGAACC
GTATAGGAACCAGACGTGACAAAACAGCAAGCGGATACATCACCGAAAGTGCCCGGTATAAAGCACAAAGATGTGAAGGGTGTCCTTTGTGTGGCAGTTG
CTTTAAAGCTAGGGGGAACCGTATGATAGAAGTCAACCACCGGTTAAACCAATACAAACGGCAGGCACGGGAAAGGTTACTCTCGGAAGAAGGCATCAGG
CATAGGGGAAGGCGATGTATAGAACCGGAAGCAGTTTTTGGACAAATGAAACACAACATGGCATACAAAAGGTTCCGGCATGTGGGAGAAGACAAGGTTA
CAATGGACTTTGCCTTCTTTGCTATAGCTTTTAATATCAAAAAGATGTGTACAAAACTACTAAAAGCAGGAAAGAGAAGGAGTGCACACACTATATTTAT
CTTTATCAGACCACGTGTGACTCAAAATACGACGAATATTAAGCCTTATTACCTAATTACTGAAAAAATAGTCGCATAGACAAAAAAAGAGGAACGACTA
TTTTATATTAAAAAAAGAAGGGGATGTGCCTTAGTTTTGACACAGCCCC
GCATAAAGTTTTTCGTTATGGCAAAGTTACATTTTCGTCCTTACATTCCCAACCAAACAGTTCTTTTTCCCGGAAGAATTGATGAAAACATAGCAGCGAA
CGATCCGGTTCGCATAGTTCATACTGTTGTTGATAATCTCAATCTTGACAATTTCAAGAAGCTTTATAAAGCAACCGGTCGTTGTCCTTATCATCCTAAA
ATGATGCTTAAGGTGATTATTTACGCCTACATGAACAATATCTATTCGTGCCGCAAAATAGAGAAGCTTCTCCTACGTGATATTCATTATATCTGGCTTT
CCGGTAATGAACATCCGGATTTTATTACCATCAACCGTTTTCGAAACCGTGTAAAAGAGGAAATAAATACTGTATTCACGCAGTTGGTTCTTGTCCTTGC
CGACAAAGGTTTCATCAGCCTTGACGTAGAGTATATTGACGGTACCAAGATTGAGTCGAAAGCCAACAAATATACTTTTGTCTGGCGCAAGACAGTCGAA
AAGAACCGTACAAAGCTGATGGATAAGATCCGCATTCTCCTGAAGCAGGTGGATGAAGTCATAGCCCAAGAGAACTCCATGAAAGATACACCCGTAGAGT
TCACTCCCGCCATGCTCTCAGATATAGTGAATGAACTTAAAGAGGTGCTGGAACACCAGCCTGTAACAAAGGACAAGGAACAAAAGAAGGTCATCCGGGA
AAAGAAGAAACAGGTCCGGGAACTTGAGGAGTACCGTGACAAGTTGATAGAATACGACAACCATCTTGATACTCTTGGAGAACGCAACTCCTACTCCAAG
ACCGATCCTGATGCCACCTTCATGCGCATGAAAGAAGACGCCATGAGAAACGGACAGACCAAACCCGGATATAATCTGCAAATAGGTACCGAGAACCAAT
TCCTCATAGACTTCCGACTGTTTCCCAACCCAACCGATACACTGACCCTCATACCTTTCTTCCACTCCTTTGAGCAACGCTATAACCGCTTACCAACTGT
CGGTGTGGCAGACTCCGGTTACGGCTCGGAAGAAAATTATCGGTTCATGCAAGATAATGGGATAGAAGCCTTTGTCAAGTACAACTACTTCCATAAAGAA
CAGCGTCCCCGTTATACCCCCAATCCATTCCATGCGGAGAGTCTCCATTACAATGCGGGGGAGGATTATTACGTTTGTCCTATGGGGCAGCACATGAACC
GTATAGGAACCAGACGTGACAAAACAGCAAGCGGATACATCACCGAAAGTGCCCGGTATAAAGCACAAAGATGTGAAGGGTGTCCTTTGTGTGGCAGTTG
CTTTAAAGCTAGGGGGAACCGTATGATAGAAGTCAACCACCGGTTAAACCAATACAAACGGCAGGCACGGGAAAGGTTACTCTCGGAAGAAGGCATCAGG
CATAGGGGAAGGCGATGTATAGAACCGGAAGCAGTTTTTGGACAAATGAAACACAACATGGCATACAAAAGGTTCCGGCATGTGGGAGAAGACAAGGTTA
CAATGGACTTTGCCTTCTTTGCTATAGCTTTTAATATCAAAAAGATGTGTACAAAACTACTAAAAGCAGGAAAGAGAAGGAGTGCACACACTATATTTAT
CTTTATCAGACCACGTGTGACTCAAAATACGACGAATATTAAGCCTTATTACCTAATTACTGAAAAAATAGTCGCATAGACAAAAAAAGAGGAACGACTA
TTTTATATTAAAAAAAGAAGGGGATGTGCCTTAGTTTTGACACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1662 bp | 553 aa | 118 | 1779 | + | No |
Chemistry : DDE
ORF sequence :
MAKLHFRPYIPNQTVLFPGRIDENIAANDPVRIVHTVVDNLNLDNFKKLYKATGRCPYHPKMMLKVIIYAYMNNIYSCRKIEKLLLRDIHYIWLSGNEHP
DFITINRFRNRVKEEINTVFTQLVLVLADKGFISLDVEYIDGTKIESKANKYTFVWRKTVEKNRTKLMDKIRILLKQVDEVIAQENSMKDTPVEFTPAML
SDIVNELKEVLEHQPVTKDKEQKKVIREKKKQVRELEEYRDKLIEYDNHLDTLGERNSYSKTDPDATFMRMKEDAMRNGQTKPGYNLQIGTENQFLIDFR
LFPNPTDTLTLIPFFHSFEQRYNRLPTVGVADSGYGSEENYRFMQDNGIEAFVKYNYFHKEQRPRYTPNPFHAESLHYNAGEDYYVCPMGQHMNRIGTRR
DKTASGYITESARYKAQRCEGCPLCGSCFKARGNRMIEVNHRLNQYKRQARERLLSEEGIRHRGRRCIEPEAVFGQMKHNMAYKRFRHVGEDKVTMDFAF
FAIAFNIKKMCTKLLKAGKRRSAHTIFIFIRPRVTQNTTNIKPYYLITEKIVA
DFITINRFRNRVKEEINTVFTQLVLVLADKGFISLDVEYIDGTKIESKANKYTFVWRKTVEKNRTKLMDKIRILLKQVDEVIAQENSMKDTPVEFTPAML
SDIVNELKEVLEHQPVTKDKEQKKVIREKKKQVRELEEYRDKLIEYDNHLDTLGERNSYSKTDPDATFMRMKEDAMRNGQTKPGYNLQIGTENQFLIDFR
LFPNPTDTLTLIPFFHSFEQRYNRLPTVGVADSGYGSEENYRFMQDNGIEAFVKYNYFHKEQRPRYTPNPFHAESLHYNAGEDYYVCPMGQHMNRIGTRR
DKTASGYITESARYKAQRCEGCPLCGSCFKARGNRMIEVNHRLNQYKRQARERLLSEEGIRHRGRRCIEPEAVFGQMKHNMAYKRFRHVGEDKVTMDFAF
FAIAFNIKKMCTKLLKAGKRRSAHTIFIFIRPRVTQNTTNIKPYYLITEKIVA
Blast result :
Comments
ISBthe2 is 57% aa similar to IS660. There are one full and one partial copy in Bacteroides thetaiotaomicron VPI-5482 genome at coordinates : 2490354-2492202.
References
1] ISfinder annotation (2005)
2] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2003) Science 299 (5615), 2074-2076
2] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2003) Science 299 (5615), 2074-2076