ISBthe2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004663 ND Bacteroides thetaiotaomicron
Bacteroides thetaiotaomicron VPI-5482
DNA section
IS Length : 1849 bp

Ends


IR Length : 21/27

IRL : GAGGTTGTGTCAAAACGCTGGCACAACCTTTTTTTATGCACAAAGCCCAG
IRR : GGGGCTGTGTCAAAACTAAGGCACATCCCCTTCTTTTTTTAATATAAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGAAATAAAAATTTTTTTTATT2

DNA sequence

GAGGTTGTGTCAAAACGCTGGCACAACCTTTTTTTATGCACAAAGCCCAGACTTTCACAAGCCCGGGCTTTGTTATTACCCAAAGTTTTTGTATCTTTAG
GCATAAAGTTTTTCGTTATGGCAAAGTTACATTTTCGTCCTTACATTCCCAACCAAACAGTTCTTTTTCCCGGAAGAATTGATGAAAACATAGCAGCGAA
CGATCCGGTTCGCATAGTTCATACTGTTGTTGATAATCTCAATCTTGACAATTTCAAGAAGCTTTATAAAGCAACCGGTCGTTGTCCTTATCATCCTAAA
ATGATGCTTAAGGTGATTATTTACGCCTACATGAACAATATCTATTCGTGCCGCAAAATAGAGAAGCTTCTCCTACGTGATATTCATTATATCTGGCTTT
CCGGTAATGAACATCCGGATTTTATTACCATCAACCGTTTTCGAAACCGTGTAAAAGAGGAAATAAATACTGTATTCACGCAGTTGGTTCTTGTCCTTGC
CGACAAAGGTTTCATCAGCCTTGACGTAGAGTATATTGACGGTACCAAGATTGAGTCGAAAGCCAACAAATATACTTTTGTCTGGCGCAAGACAGTCGAA
AAGAACCGTACAAAGCTGATGGATAAGATCCGCATTCTCCTGAAGCAGGTGGATGAAGTCATAGCCCAAGAGAACTCCATGAAAGATACACCCGTAGAGT
TCACTCCCGCCATGCTCTCAGATATAGTGAATGAACTTAAAGAGGTGCTGGAACACCAGCCTGTAACAAAGGACAAGGAACAAAAGAAGGTCATCCGGGA
AAAGAAGAAACAGGTCCGGGAACTTGAGGAGTACCGTGACAAGTTGATAGAATACGACAACCATCTTGATACTCTTGGAGAACGCAACTCCTACTCCAAG
ACCGATCCTGATGCCACCTTCATGCGCATGAAAGAAGACGCCATGAGAAACGGACAGACCAAACCCGGATATAATCTGCAAATAGGTACCGAGAACCAAT
TCCTCATAGACTTCCGACTGTTTCCCAACCCAACCGATACACTGACCCTCATACCTTTCTTCCACTCCTTTGAGCAACGCTATAACCGCTTACCAACTGT
CGGTGTGGCAGACTCCGGTTACGGCTCGGAAGAAAATTATCGGTTCATGCAAGATAATGGGATAGAAGCCTTTGTCAAGTACAACTACTTCCATAAAGAA
CAGCGTCCCCGTTATACCCCCAATCCATTCCATGCGGAGAGTCTCCATTACAATGCGGGGGAGGATTATTACGTTTGTCCTATGGGGCAGCACATGAACC
GTATAGGAACCAGACGTGACAAAACAGCAAGCGGATACATCACCGAAAGTGCCCGGTATAAAGCACAAAGATGTGAAGGGTGTCCTTTGTGTGGCAGTTG
CTTTAAAGCTAGGGGGAACCGTATGATAGAAGTCAACCACCGGTTAAACCAATACAAACGGCAGGCACGGGAAAGGTTACTCTCGGAAGAAGGCATCAGG
CATAGGGGAAGGCGATGTATAGAACCGGAAGCAGTTTTTGGACAAATGAAACACAACATGGCATACAAAAGGTTCCGGCATGTGGGAGAAGACAAGGTTA
CAATGGACTTTGCCTTCTTTGCTATAGCTTTTAATATCAAAAAGATGTGTACAAAACTACTAAAAGCAGGAAAGAGAAGGAGTGCACACACTATATTTAT
CTTTATCAGACCACGTGTGACTCAAAATACGACGAATATTAAGCCTTATTACCTAATTACTGAAAAAATAGTCGCATAGACAAAAAAAGAGGAACGACTA
TTTTATATTAAAAAAAGAAGGGGATGTGCCTTAGTTTTGACACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1662 bp553 aa1181779+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKLHFRPYIPNQTVLFPGRIDENIAANDPVRIVHTVVDNLNLDNFKKLYKATGRCPYHPKMMLKVIIYAYMNNIYSCRKIEKLLLRDIHYIWLSGNEHP
DFITINRFRNRVKEEINTVFTQLVLVLADKGFISLDVEYIDGTKIESKANKYTFVWRKTVEKNRTKLMDKIRILLKQVDEVIAQENSMKDTPVEFTPAML
SDIVNELKEVLEHQPVTKDKEQKKVIREKKKQVRELEEYRDKLIEYDNHLDTLGERNSYSKTDPDATFMRMKEDAMRNGQTKPGYNLQIGTENQFLIDFR
LFPNPTDTLTLIPFFHSFEQRYNRLPTVGVADSGYGSEENYRFMQDNGIEAFVKYNYFHKEQRPRYTPNPFHAESLHYNAGEDYYVCPMGQHMNRIGTRR
DKTASGYITESARYKAQRCEGCPLCGSCFKARGNRMIEVNHRLNQYKRQARERLLSEEGIRHRGRRCIEPEAVFGQMKHNMAYKRFRHVGEDKVTMDFAF
FAIAFNIKKMCTKLLKAGKRRSAHTIFIFIRPRVTQNTTNIKPYYLITEKIVA

 

Blast result :
Comments
ISBthe2 is 57% aa similar to IS660. There are one full and one partial copy in Bacteroides thetaiotaomicron VPI-5482 genome at coordinates : 2490354-2492202.
References
1] ISfinder annotation (2005)
2] Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. (2003) Science 299 (5615), 2074-2076