ISPa22

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002516 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa PA01
DNA section
IS Length : 1664 bp

Ends


IR Length : 14/15

IRL : CAGGCTGTGTAAAAACGTGGCTAGTGCTCTTGTTATCCTGCCGTCGGCAG
IRR : CAGGCCGTGTAAAAAACACAGCGAGCGCTGGGTAGCCGGATATGGAATGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGCAGCAACCGGACGGCCGATTGCGGCCC0

DNA sequence

CAGGCTGTGTAAAAACGTGGCTAGTGCTCTTGTTATCCTGCCGTCGGCAGTCATAGCGGGGACAGTCCATGAAGCGTTTCATCCAAGGCGAGCATCGAGG
CCAATGCACACTGCTGCCCGAGAGACTGGATGATTACGTCGCGGACACCAATCCGGTGCGAGTAGTCGATGTGTTCGTCGATGAACTCGATCTCGGGCGG
TTGGGTTTCGGCGGCGTGGTTCCCGCCGAAACTGGCCGCCCTGCGTATCACCCGGCCGTCCTGCTGAAGATCTGTATCTACGGTTACCTCAACCGCATCC
AGTCGAGTCGCCGCCTCGAACGTGAAGCACAACGCAACGTCGAGTTGATGTGGCTGACCGGACGCCTGATGCCGGACTTCAAGACCATCGCCAACTTCCG
CAAGGACAACGGCAAAGCCATTCGTGGTGTCTGCCGGCAGTTCGTGGTGCTGTGCCAGCAACTCAGTTTGTTCTCCGAAGCGCTGGTGGCAATCGACGGC
AGCAAGTTCAAGGCGGTCAACATTCGCGACCGCAACTTCACCAGTGCCAAGCTGCAACGGCGAATGGAGGAGATCGAATCCTGCATCAGCCGCTACCTCA
CTGCGCTGGACACTGCCGACCGGCAAGAGCCTGCTGTGGCACGGGCCAAATCCGAGCGTTTGCACAGCAAGATTGCCGCCCTGAAGATGCAGGAACTCAG
GGATATCGAAGTTCAGTTGGAGGCCACCCCGGACAAACAGATTTCGCTTACTGATCCCGACGCACATTCTATGATGACGCGCGGCACTAGCATGGTCGGT
TACAACGTCCAGGCTGCGGTTGAGGCGAAGCATCATCTGATCGTGACGCACGAGGTCACCAACAATGGCATCGACCGCGATCAACTGAGTGCGATGGCCA
AGCAGGCGTGGGTGGCAATGGGAACGCAATCGCTGTCGGTGGTTGCCGATCGTGGATACTTCAAAGGCGAAGAAATCCTCTCCTGCCACGAGGCTGGCAT
CACCACCTTCGTCCCCAAAGCCAAGACTTCAGGCGCTGCCGCAGCGGGTCGCTTTGGTCGAGATGATTTTATTTACGACACAGCCCAGAACGAGTACCGC
TGCCCAGCGGGAGAACGCCTGATCTGGCGTTTTGCGACGGTTGAGAAAGGCCTGAAGCTGCACCGTTACTGGAATTCGAATTGCCAAGGCTGTGCGTTGA
AAGATCAGTGCACACCGAGCGCGCAGCGGCGAGTGAGTCGCTGGGAGCACGAGTCGGTGCTCAACGCGGTGCAGTCCCGCCTGGATCAGGCACCGGAGAT
GATGCGTATCCGCCGCCAGACAGTGGAGCATCCTTTCGGCACACTGAAGGCATGGATGGGCGCCACCCATTTCCTTACCAAGACGCTCAACCGCGTGAGC
ACGGAAATGAGCCTGCATGTGCTCGCCTACAACTTCAAACGGGTGCTGAACCTGCTGGGCAATAGTGCGCTGATAGCGGCAATGAAGGCCTGAAACCTCA
TTGGCAGCCCTCCGAACGCCTCGCACAGAATCGTGGAAGCAGCACTTGCCGAATCAGCTGAATGCCCCGGATGGACACACCACGCGTCCAGGAGGCCGCC
GGATATCATTAAAACCATTCCATATCCGGCTACCCAGCGCTCGCTGTGTTTTTTACACGGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1425 bp474 aa691493+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRFIQGEHRGQCTLLPERLDDYVADTNPVRVVDVFVDELDLGRLGFGGVVPAETGRPAYHPAVLLKICIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNGKAIRGVCRQFVVLCQQLSLFSEALVAIDGSKFKAVNIRDRNFTSAKLQRRMEEIESCISRYLTALDTADRQEPAVARAKSERLHS
KIAALKMQELRDIEVQLEATPDKQISLTDPDAHSMMTRGTSMVGYNVQAAVEAKHHLIVTHEVTNNGIDRDQLSAMAKQAWVAMGTQSLSVVADRGYFKG
EEILSCHEAGITTFVPKAKTSGAAAAGRFGRDDFIYDTAQNEYRCPAGERLIWRFATVEKGLKLHRYWNSNCQGCALKDQCTPSAQRRVSRWEHESVLNA
VQSRLDQAPEMMRIRRQTVEHPFGTLKAWMGATHFLTKTLNRVSTEMSLHVLAYNFKRVLNLLGNSALIAAMKA

 

Blast result :
Comments
ISPa22 is 92% aa similar to ISPa7. there is only one copy in the Pseudomoans aeruginosa genome.
References
1] ISfinder annotation (2005)
2] Stover,C.K., Pham,X.-Q.T., Erwin,A.L., Mizoguchi,S.D., Warrener,P., Hickey,M.J., Brinkman,F.S.L., Hufnagle,W.O., Kowalik,D.J., Lagrou,M., Garber,R.L., Goltry,L., Tolentino,E., Westbrook-Wadman,S., Yuan,Y., Brody,L.L., Coulter,S.N., Folger,K.R., Kas,A., Larbig,K., Lim,R.M., Smith,K.A., Spencer,D.H., Wong,G.K.-S., Wu,Z., Paulsen,I.T., Reizer,J., Saier,M.H., Hancock,R.E.W., Lory,S. and Olson,M.V. (2000) Nature 406 (6799), 959-964