ISPa22
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002516 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa PA01 |
DNA section
IS Length : 1664 bp
Ends
IR Length : 14/15
IRL : CAGGCTGTGTAAAAACGTGGCTAGTGCTCTTGTTATCCTGCCGTCGGCAG
IRR : CAGGCCGTGTAAAAAACACAGCGAGCGCTGGGTAGCCGGATATGGAATGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGGCAGCAACCGGAC | GGCCGATTGCGGCCC | 0 |
DNA sequence
CAGGCTGTGTAAAAACGTGGCTAGTGCTCTTGTTATCCTGCCGTCGGCAGTCATAGCGGGGACAGTCCATGAAGCGTTTCATCCAAGGCGAGCATCGAGG
CCAATGCACACTGCTGCCCGAGAGACTGGATGATTACGTCGCGGACACCAATCCGGTGCGAGTAGTCGATGTGTTCGTCGATGAACTCGATCTCGGGCGG
TTGGGTTTCGGCGGCGTGGTTCCCGCCGAAACTGGCCGCCCTGCGTATCACCCGGCCGTCCTGCTGAAGATCTGTATCTACGGTTACCTCAACCGCATCC
AGTCGAGTCGCCGCCTCGAACGTGAAGCACAACGCAACGTCGAGTTGATGTGGCTGACCGGACGCCTGATGCCGGACTTCAAGACCATCGCCAACTTCCG
CAAGGACAACGGCAAAGCCATTCGTGGTGTCTGCCGGCAGTTCGTGGTGCTGTGCCAGCAACTCAGTTTGTTCTCCGAAGCGCTGGTGGCAATCGACGGC
AGCAAGTTCAAGGCGGTCAACATTCGCGACCGCAACTTCACCAGTGCCAAGCTGCAACGGCGAATGGAGGAGATCGAATCCTGCATCAGCCGCTACCTCA
CTGCGCTGGACACTGCCGACCGGCAAGAGCCTGCTGTGGCACGGGCCAAATCCGAGCGTTTGCACAGCAAGATTGCCGCCCTGAAGATGCAGGAACTCAG
GGATATCGAAGTTCAGTTGGAGGCCACCCCGGACAAACAGATTTCGCTTACTGATCCCGACGCACATTCTATGATGACGCGCGGCACTAGCATGGTCGGT
TACAACGTCCAGGCTGCGGTTGAGGCGAAGCATCATCTGATCGTGACGCACGAGGTCACCAACAATGGCATCGACCGCGATCAACTGAGTGCGATGGCCA
AGCAGGCGTGGGTGGCAATGGGAACGCAATCGCTGTCGGTGGTTGCCGATCGTGGATACTTCAAAGGCGAAGAAATCCTCTCCTGCCACGAGGCTGGCAT
CACCACCTTCGTCCCCAAAGCCAAGACTTCAGGCGCTGCCGCAGCGGGTCGCTTTGGTCGAGATGATTTTATTTACGACACAGCCCAGAACGAGTACCGC
TGCCCAGCGGGAGAACGCCTGATCTGGCGTTTTGCGACGGTTGAGAAAGGCCTGAAGCTGCACCGTTACTGGAATTCGAATTGCCAAGGCTGTGCGTTGA
AAGATCAGTGCACACCGAGCGCGCAGCGGCGAGTGAGTCGCTGGGAGCACGAGTCGGTGCTCAACGCGGTGCAGTCCCGCCTGGATCAGGCACCGGAGAT
GATGCGTATCCGCCGCCAGACAGTGGAGCATCCTTTCGGCACACTGAAGGCATGGATGGGCGCCACCCATTTCCTTACCAAGACGCTCAACCGCGTGAGC
ACGGAAATGAGCCTGCATGTGCTCGCCTACAACTTCAAACGGGTGCTGAACCTGCTGGGCAATAGTGCGCTGATAGCGGCAATGAAGGCCTGAAACCTCA
TTGGCAGCCCTCCGAACGCCTCGCACAGAATCGTGGAAGCAGCACTTGCCGAATCAGCTGAATGCCCCGGATGGACACACCACGCGTCCAGGAGGCCGCC
GGATATCATTAAAACCATTCCATATCCGGCTACCCAGCGCTCGCTGTGTTTTTTACACGGCCTG
CCAATGCACACTGCTGCCCGAGAGACTGGATGATTACGTCGCGGACACCAATCCGGTGCGAGTAGTCGATGTGTTCGTCGATGAACTCGATCTCGGGCGG
TTGGGTTTCGGCGGCGTGGTTCCCGCCGAAACTGGCCGCCCTGCGTATCACCCGGCCGTCCTGCTGAAGATCTGTATCTACGGTTACCTCAACCGCATCC
AGTCGAGTCGCCGCCTCGAACGTGAAGCACAACGCAACGTCGAGTTGATGTGGCTGACCGGACGCCTGATGCCGGACTTCAAGACCATCGCCAACTTCCG
CAAGGACAACGGCAAAGCCATTCGTGGTGTCTGCCGGCAGTTCGTGGTGCTGTGCCAGCAACTCAGTTTGTTCTCCGAAGCGCTGGTGGCAATCGACGGC
AGCAAGTTCAAGGCGGTCAACATTCGCGACCGCAACTTCACCAGTGCCAAGCTGCAACGGCGAATGGAGGAGATCGAATCCTGCATCAGCCGCTACCTCA
CTGCGCTGGACACTGCCGACCGGCAAGAGCCTGCTGTGGCACGGGCCAAATCCGAGCGTTTGCACAGCAAGATTGCCGCCCTGAAGATGCAGGAACTCAG
GGATATCGAAGTTCAGTTGGAGGCCACCCCGGACAAACAGATTTCGCTTACTGATCCCGACGCACATTCTATGATGACGCGCGGCACTAGCATGGTCGGT
TACAACGTCCAGGCTGCGGTTGAGGCGAAGCATCATCTGATCGTGACGCACGAGGTCACCAACAATGGCATCGACCGCGATCAACTGAGTGCGATGGCCA
AGCAGGCGTGGGTGGCAATGGGAACGCAATCGCTGTCGGTGGTTGCCGATCGTGGATACTTCAAAGGCGAAGAAATCCTCTCCTGCCACGAGGCTGGCAT
CACCACCTTCGTCCCCAAAGCCAAGACTTCAGGCGCTGCCGCAGCGGGTCGCTTTGGTCGAGATGATTTTATTTACGACACAGCCCAGAACGAGTACCGC
TGCCCAGCGGGAGAACGCCTGATCTGGCGTTTTGCGACGGTTGAGAAAGGCCTGAAGCTGCACCGTTACTGGAATTCGAATTGCCAAGGCTGTGCGTTGA
AAGATCAGTGCACACCGAGCGCGCAGCGGCGAGTGAGTCGCTGGGAGCACGAGTCGGTGCTCAACGCGGTGCAGTCCCGCCTGGATCAGGCACCGGAGAT
GATGCGTATCCGCCGCCAGACAGTGGAGCATCCTTTCGGCACACTGAAGGCATGGATGGGCGCCACCCATTTCCTTACCAAGACGCTCAACCGCGTGAGC
ACGGAAATGAGCCTGCATGTGCTCGCCTACAACTTCAAACGGGTGCTGAACCTGCTGGGCAATAGTGCGCTGATAGCGGCAATGAAGGCCTGAAACCTCA
TTGGCAGCCCTCCGAACGCCTCGCACAGAATCGTGGAAGCAGCACTTGCCGAATCAGCTGAATGCCCCGGATGGACACACCACGCGTCCAGGAGGCCGCC
GGATATCATTAAAACCATTCCATATCCGGCTACCCAGCGCTCGCTGTGTTTTTTACACGGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1425 bp | 474 aa | 69 | 1493 | + | No |
Chemistry : DDE
ORF sequence :
MKRFIQGEHRGQCTLLPERLDDYVADTNPVRVVDVFVDELDLGRLGFGGVVPAETGRPAYHPAVLLKICIYGYLNRIQSSRRLEREAQRNVELMWLTGRL
MPDFKTIANFRKDNGKAIRGVCRQFVVLCQQLSLFSEALVAIDGSKFKAVNIRDRNFTSAKLQRRMEEIESCISRYLTALDTADRQEPAVARAKSERLHS
KIAALKMQELRDIEVQLEATPDKQISLTDPDAHSMMTRGTSMVGYNVQAAVEAKHHLIVTHEVTNNGIDRDQLSAMAKQAWVAMGTQSLSVVADRGYFKG
EEILSCHEAGITTFVPKAKTSGAAAAGRFGRDDFIYDTAQNEYRCPAGERLIWRFATVEKGLKLHRYWNSNCQGCALKDQCTPSAQRRVSRWEHESVLNA
VQSRLDQAPEMMRIRRQTVEHPFGTLKAWMGATHFLTKTLNRVSTEMSLHVLAYNFKRVLNLLGNSALIAAMKA
MPDFKTIANFRKDNGKAIRGVCRQFVVLCQQLSLFSEALVAIDGSKFKAVNIRDRNFTSAKLQRRMEEIESCISRYLTALDTADRQEPAVARAKSERLHS
KIAALKMQELRDIEVQLEATPDKQISLTDPDAHSMMTRGTSMVGYNVQAAVEAKHHLIVTHEVTNNGIDRDQLSAMAKQAWVAMGTQSLSVVADRGYFKG
EEILSCHEAGITTFVPKAKTSGAAAAGRFGRDDFIYDTAQNEYRCPAGERLIWRFATVEKGLKLHRYWNSNCQGCALKDQCTPSAQRRVSRWEHESVLNA
VQSRLDQAPEMMRIRRQTVEHPFGTLKAWMGATHFLTKTLNRVSTEMSLHVLAYNFKRVLNLLGNSALIAAMKA
Blast result :
Comments
ISPa22 is 92% aa similar to ISPa7. there is only one copy in the Pseudomoans aeruginosa genome.
References
1] ISfinder annotation (2005)
2] Stover,C.K., Pham,X.-Q.T., Erwin,A.L., Mizoguchi,S.D., Warrener,P., Hickey,M.J., Brinkman,F.S.L., Hufnagle,W.O., Kowalik,D.J., Lagrou,M., Garber,R.L., Goltry,L., Tolentino,E., Westbrook-Wadman,S., Yuan,Y., Brody,L.L., Coulter,S.N., Folger,K.R., Kas,A., Larbig,K., Lim,R.M., Smith,K.A., Spencer,D.H., Wong,G.K.-S., Wu,Z., Paulsen,I.T., Reizer,J., Saier,M.H., Hancock,R.E.W., Lory,S. and Olson,M.V. (2000) Nature 406 (6799), 959-964
2] Stover,C.K., Pham,X.-Q.T., Erwin,A.L., Mizoguchi,S.D., Warrener,P., Hickey,M.J., Brinkman,F.S.L., Hufnagle,W.O., Kowalik,D.J., Lagrou,M., Garber,R.L., Goltry,L., Tolentino,E., Westbrook-Wadman,S., Yuan,Y., Brody,L.L., Coulter,S.N., Folger,K.R., Kas,A., Larbig,K., Lim,R.M., Smith,K.A., Spencer,D.H., Wong,G.K.-S., Wu,Z., Paulsen,I.T., Reizer,J., Saier,M.H., Hancock,R.E.W., Lory,S. and Olson,M.V. (2000) Nature 406 (6799), 959-964