ISAzba6

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Azospirillum brasilense
Azospirillum brasilense
DNA section
IS Length : 1138 bp

Ends


IR Length : 17/22

IRL : GTGCACTGACGCAGACATAGGATTCACAGCGGCCGGCCGACGTGCGATTC
IRR : GTGCACTGACTCATTCAGAAGGTGCAGGGAGCCGGGCGATCTTGGCGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGTACGACCTAGATTGCAGCC2
CTCGCGCACCTAGCAAAGACGC2
CCGGGCCAGCTAGGTCACATCC2

DNA sequence

GTGCACTGACGCAGACATAGGATTCACAGCGGCCGGCCGACGTGCGATTCTGTCGGCATGGCCCAGACCGTCAGCATCATCGTTGGAGCGGAGGACCGCG
CGCGCTTGGCCGCGATCCTCGGCGACCGGAACCGCCCTCAGAAGCATGTGCAGCGGGCGACCATCATCGTGCTCTCGGCCGAGCGGCTACCGGTGCAGGA
GGTGGCGCGCCGCGCCGGTGTCAGCCGCCCGGCGGTCTGGCGCTGGCAGGTGCGCTACGCCGAACAGGGCGTGGACGGGCTGCTGCGCGACAAGACGCGT
AAACCTGGGCGGGCGCCGCTGCCCACCGCTACGGTAGCCAAGGTGCTGGCGCTGACCTGCTCGGAACCACCCGGCGCGGTGACGCATTGGACCGGCCGGG
CGGTGGCCAAGGCGGTCGGCATCAGCCTGCGCGCCGTGCAGCGCATCTGGGAGGCCAATCGCCTTCAGCCCCATCGCATCCGCACCTTCAAGCGCTCCAA
CGACCCGGCCTTTGCCGCCAAGGTCGAGGACATCGTCGGGCTCTACATGGACCCGCCGTGCCACGCAGTGGTGCTGTCCATCGACGAGAAGAGCCAGATC
CAGGCGCTCGACCGCACCCAGCCCGGCCTGCCGCTGAAGCCCGGCAAGTGCGGGACGATGACGCACGACTACAAGCGCAACGGCACCACCACGCTGTTCG
CCGCGCTGAACACGCTGGACGGCACGGTGGTCGGGCGCTGCCTGCCCAAGCACACCCACAAGGAGTTCATCAAGTTCCTGAACGCTGTGGAGCGCGCCGT
CCCGGCGGGCAAGGTGATCCATGCCATCGTCGATAATTACGCCACCCACAAGCATCCCAAGGTCCTGGAATGGCTGGCTGATCACCCGCGCTGGGTCTTC
CACTTCACGCCTACCTCGGCCTCCTGGATCAATGCCGTCGAGGGCTTCTTCTCGATCATCACCCGCAGACGCATTCGGCGCGGCGTCTTCAAGTCCGTGG
CCGACCTCCAGGACGCCATCGCCCGCTACATCCGCGAGCACAACAAGGCATCCAAACCCTTCGTCTGGATCAAGCCCGCCGACACCATCCTCGCCAAGAT
CGCCCGGCTCCCTGCACCTTCTGAATGAGTCAGTGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp356 aa581128+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQTVSIIVGAEDRARLAAILGDRNRPQKHVQRATIIVLSAERLPVQEVARRAGVSRPAVWRWQVRYAEQGVDGLLRDKTRKPGRAPLPTATVAKVLALT
CSEPPGAVTHWTGRAVAKAVGISLRAVQRIWEANRLQPHRIRTFKRSNDPAFAAKVEDIVGLYMDPPCHAVVLSIDEKSQIQALDRTQPGLPLKPGKCGT
MTHDYKRNGTTTLFAALNTLDGTVVGRCLPKHTHKEFIKFLNAVERAVPAGKVIHAIVDNYATHKHPKVLEWLADHPRWVFHFTPTSASWINAVEGFFSI
ITRRRIRRGVFKSVADLQDAIARYIREHNKASKPFVWIKPADTILAKIARLPAPSE

 

Blast result :
Comments
ISAzba6 is 72% aa similar to IS870.
References
1] ISfinder annotation (2009)