ISAar2

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1473 bp

Ends


Left end : CCCGTTATGTTGTTGACAGCTCCTTAACTCCGAGGAATATAGGAGCTGTCGGCCGACCAATCTCGGCATGGTGTCTTGCCCCTGCTTATCCAATAGTCCG
Right end : ACCGACGGCTCACAGTCCTGTTCGCCATGATCCGTGACGGGTCACTCTATGACGTGCCAGAGCTGAAAATAGCTTGACTTTTTACATAGGGGCACCCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
CCAAGGAGCGGACCGCGTGG0
CGAGAGCCGCTTTCCCGGCC0

DNA sequence

CCCGTTATGTTGTTGACAGCTCCTTAACTCCGAGGAATATAGGAGCTGTCGGCCGACCAATCTCGGCATGGTGTCTTGCCCCTGCTTATCCAATAGTCCG
GGGGGTGTTGCCACCGAGATTGGGATGGCAGCGAGGTGATTGCTAATTAGGGGCGCGGCGCCAAAATGGACGCCTGTCATAACGTGGATGTAAGACTTTG
CTACCGACGGTTGGTCGACCTTGAACAAAAACTAGTTCAAAGGAGCACTAGTCATGATCACCACAGACATCGAGATTTTCCTCGGCCTGGACGTCGGGAA
AACCGACCACTGGGCCTGCGCTGTCACCCAAGACGGCACCAAAATCTGGAACAAAACCCTACCCAACGACGAAGCCAAACTCACCGCCGTGTATCAGAAG
CTTTTAGCTCTAGGACATGTCTTGGTGGTCGTGGATCAGCCAGCCACCATCGGCGCCCTGGCCGTTGCGGTCGCTCAGCACCTCGGCATTCCGGTGGCAT
ACCTGCCTGGGCTCTCGATGCGGCGCATCGCAGATATGTATCCTGGGACGGCGAAAACAGACGAAAAAGATGCCTTTATCATCGCGGATGCGGCCCGTAC
CATGCCGCATACCTTGCGTAGCATCCAGGTCTCTGACGAGGACGAAGCCACCTTAGGCATGCTCACCGGTTTCGACCTGGACCTGGCCCGTCAGATCACT
CAGACCAGCAACCGGATCCGCGGGCTATTCACCCAGATCCACCCACCCCTGGAACGAGTGATCGGACCTTGGCTGGAGCATGATGCTGTTTTGGAGGTCC
TCGCCACCTGGCCCACCCCAGCGCAACTGAAGCACGCGGGCAAAGCGCGGATCGATGCGAAGCTGAAAAAGCAGGGAGCCCGCCGTCACACTGCTTGGGC
CGGAGCCATCATGGATGCACTGGATGAGCAAACAGTGGTCGTGGTCGGCACCGACGCAGCCGGCCTGGTCCTCCCGCATCTGGCCCGCCAGATGATCTCG
TTGCATGCTCAGCGTGTGGACGTGGCCACGCATTTGGAGGCAATGGTGGAGGCCCACCCTCTTTACCCGGTCCTGACATCCATGCCCGGGGTCGCCGTCA
GGACCGCCGCGATCATCATCGCCGAGACCTCCGGCAAGACCTTCGCCAGTGCCGCATCACTGTCCTCTTACGCTGGGCTTGCGCCAAACACGCGCCAGTC
TGGCACCTCGATCAAGTCCGAGCGCGTCAGCCATTCAGGCAACAAACGGCTGAAGCGAGCGCTCTTCCTCTCGGCGTTTGCCTCGATCAGGTTCGACCCG
ACCAGCCGGGCCTACTACGACCGGAAACGTGCTCAAGGCAAACGCCATAACCAAGCACTTATCGCACTGGCCCACCGACGGCTCACAGTCCTGTTCGCCA
TGATCCGTGACGGGTCACTCTATGACGTGCCAGAGCTGAAAATAGCTTGACTTTTTACATAGGGGCACCCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1197 bp398 aa2541450+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MITTDIEIFLGLDVGKTDHWACAVTQDGTKIWNKTLPNDEAKLTAVYQKLLALGHVLVVVDQPATIGALAVAVAQHLGIPVAYLPGLSMRRIADMYPGTA
KTDEKDAFIIADAARTMPHTLRSIQVSDEDEATLGMLTGFDLDLARQITQTSNRIRGLFTQIHPPLERVIGPWLEHDAVLEVLATWPTPAQLKHAGKARI
DAKLKKQGARRHTAWAGAIMDALDEQTVVVVGTDAAGLVLPHLARQMISLHAQRVDVATHLEAMVEAHPLYPVLTSMPGVAVRTAAIIIAETSGKTFASA
ASLSSYAGLAPNTRQSGTSIKSERVSHSGNKRLKRALFLSAFASIRFDPTSRAYYDRKRAQGKRHNQALIALAHRRLTVLFAMIRDGSLYDVPELKIA

 

Blast result :
Comments
ISAar2 is 75% aa similar to ISBma3.
References
1] ISfinder annotation (2009).