ISAnsp9
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009675 | ND | Anaeromyxobacter sp. | Anaeromyxobacter sp. Fw109-5 |
DNA section
IS Length : 1704 bp
Ends
IR Length : 15/17
IRL : CAGACCTGATTGGTGACCAGTCGGGCGGCCGCCGGCGTCCCTGAGCAGCG
IRR : CAGACCTGATCGGTCACGCCGATCCCAGGGTTAGGCTCTCGTTCCGGGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGGTCCCGA | TGGTACCCGG | GCCGGCGGGC | 10 |
| CCGCCTGTCG | GGGGCCGGCC | GCGCTGGGCG | 10 |
| TGGCGGAGGA | AGCGGGGCCG | GGGCAGGCTG | 10 |
| TCTTTCCCGC | AGTAACGCCG | CCGCGGCGGT | 10 |
DNA sequence
CAGACCTGATTGGTGACCAGTCGGGCGGCCGCCGGCGTCCCTGAGCAGCGCCGCAGGGTTGAGGTCCAAGCCGATCCACGACCCGGCGTGCGCAAGTTCG
CACGCTGATCTCACCGAGGGTACGAAGAAAGAGCGGCGGGTGATCCTAGCCGATCACCCGCCGCGAACGGCCTGTCGCTGGGTAGGAGCCCGGCGTGAGC
CAACGACCCCGAGATCTTACGGGAGGAGATCGGTGAGGGAAAGACGAGTTCGCCGGGTGGCCGGGCTGCTGCGTGCCCGCCTCCCGGAGCTGGACCTTGA
GGCGGTGCCCGACGTCCGCGCCAGGGAGGGACGCTGGTCGCTGGCGGAGATCCTCACGGGGGTCCTTCTCGGCATCGTGGCCGGGGCGCGGAGCTTGGCC
GAGGCCGAGGAGCTGACCGACGGGATGAGCCCCGCGGCACGCCGGCTCGCCAGCGTGCCACGACGGCTTCCGGACACCACGGCGCGCGACGCGCTCTGCG
CCGTGCCGCTCGACGGGCTTCGCGCGGCGCTGCACCGGCTCGTGCGGGCCGCGTGGCGCCGCAAAGCGCTCACGCCGGTGGACCTGCCGGTCGGGGTGGT
CGCGCTCGACGGCAAGGTCACGGCGTTGCCGACGCTGAACCATCCGCTCATCCAGAACCAGCACCCCGACGTCGGGCTGCCCTACGGCCTCGCCCGCACG
GTCACCTGCGCGCTCGTCTCGGCGCCGGGGCGGCCGTGCATCGACGCGGTCCCGATCCCGGCGGAGACAAACGAGGCGGGTCACTTCCAGCACGTCCTCG
CGGGCCTCGTTGAGACCTACGGCGCGTTGTTCCAGGTGGTGACCTACGACGCGGGCGCGCTGTCCGAAGCCAACGGCGCTGCGGTAGTCGCGGCGGGCAA
GGACTACGTGTTCGCCCTAAAGAACGATCACTTCACGATGGTGAAGCTCGCGACCGAGCTGCTCGACCCGCACGAGATCGCGGCGCGGCGCGAGGACGTC
CTCGACAACGCGACGACGGCAACGCGCGAGATCCAGATCCTCGCCGTGGACCCGAGCCACGGATACGGCGCGGGCAAAGGGCCCGAGGAGTCGGTCTGGT
CGCATGCGAGGACCTTCCTGCGCGTGACCTCGACGGTGCGCCGCTCCGGCGTCGTGATCGAGCGTGACAGTCGGCTCTTCGTGTCGAGCCGAGCGGCCGA
CCAGCTCACGCCGGACCAGTGGCTCCAGGTCGTCCGCGCGCACTGGGGTGTCGAGAACAACAACCACCACACGCTCGACACCGCCTTCGCCGAGGACGAG
CGGCCGTGGATCGCCGCCGACGCGAACGGCATGCTGGCGGTGCTCCTGCTCCGCCGCATCGCGTACACGCTGCTCGCGCTCTTCCGGGCGGTGACGCTCC
GCTCGGACGACCACCGCGCGATGCGCTGGCTCGCCCTGCTGCGCTGGGTGCGCGACGCGCTCATCGTCCTCTCCGCGGAGCACGTCGAGAACCTGCGTCT
TCGCTCGCTCGCCGTCGCCACACGCTGACATCGCCGGGCTCCTACCCGCGGCGAGCGAACATCGAAGGGACCTGAGGGCGGGCGGCGGGCGCGTCGGCGC
CGGCCGGCTGCGGCCGCTGCTTGCCTCGACGTCCAGGCCGACCGCCGGCCCGGCACCCCGGAACGAGAGCCTAACCCTGGGATCGGCGTGACCGATCAGG
TCTG
CACGCTGATCTCACCGAGGGTACGAAGAAAGAGCGGCGGGTGATCCTAGCCGATCACCCGCCGCGAACGGCCTGTCGCTGGGTAGGAGCCCGGCGTGAGC
CAACGACCCCGAGATCTTACGGGAGGAGATCGGTGAGGGAAAGACGAGTTCGCCGGGTGGCCGGGCTGCTGCGTGCCCGCCTCCCGGAGCTGGACCTTGA
GGCGGTGCCCGACGTCCGCGCCAGGGAGGGACGCTGGTCGCTGGCGGAGATCCTCACGGGGGTCCTTCTCGGCATCGTGGCCGGGGCGCGGAGCTTGGCC
GAGGCCGAGGAGCTGACCGACGGGATGAGCCCCGCGGCACGCCGGCTCGCCAGCGTGCCACGACGGCTTCCGGACACCACGGCGCGCGACGCGCTCTGCG
CCGTGCCGCTCGACGGGCTTCGCGCGGCGCTGCACCGGCTCGTGCGGGCCGCGTGGCGCCGCAAAGCGCTCACGCCGGTGGACCTGCCGGTCGGGGTGGT
CGCGCTCGACGGCAAGGTCACGGCGTTGCCGACGCTGAACCATCCGCTCATCCAGAACCAGCACCCCGACGTCGGGCTGCCCTACGGCCTCGCCCGCACG
GTCACCTGCGCGCTCGTCTCGGCGCCGGGGCGGCCGTGCATCGACGCGGTCCCGATCCCGGCGGAGACAAACGAGGCGGGTCACTTCCAGCACGTCCTCG
CGGGCCTCGTTGAGACCTACGGCGCGTTGTTCCAGGTGGTGACCTACGACGCGGGCGCGCTGTCCGAAGCCAACGGCGCTGCGGTAGTCGCGGCGGGCAA
GGACTACGTGTTCGCCCTAAAGAACGATCACTTCACGATGGTGAAGCTCGCGACCGAGCTGCTCGACCCGCACGAGATCGCGGCGCGGCGCGAGGACGTC
CTCGACAACGCGACGACGGCAACGCGCGAGATCCAGATCCTCGCCGTGGACCCGAGCCACGGATACGGCGCGGGCAAAGGGCCCGAGGAGTCGGTCTGGT
CGCATGCGAGGACCTTCCTGCGCGTGACCTCGACGGTGCGCCGCTCCGGCGTCGTGATCGAGCGTGACAGTCGGCTCTTCGTGTCGAGCCGAGCGGCCGA
CCAGCTCACGCCGGACCAGTGGCTCCAGGTCGTCCGCGCGCACTGGGGTGTCGAGAACAACAACCACCACACGCTCGACACCGCCTTCGCCGAGGACGAG
CGGCCGTGGATCGCCGCCGACGCGAACGGCATGCTGGCGGTGCTCCTGCTCCGCCGCATCGCGTACACGCTGCTCGCGCTCTTCCGGGCGGTGACGCTCC
GCTCGGACGACCACCGCGCGATGCGCTGGCTCGCCCTGCTGCGCTGGGTGCGCGACGCGCTCATCGTCCTCTCCGCGGAGCACGTCGAGAACCTGCGTCT
TCGCTCGCTCGCCGTCGCCACACGCTGACATCGCCGGGCTCCTACCCGCGGCGAGCGAACATCGAAGGGACCTGAGGGCGGGCGGCGGGCGCGTCGGCGC
CGGCCGGCTGCGGCCGCTGCTTGCCTCGACGTCCAGGCCGACCGCCGGCCCGGCACCCCGGAACGAGAGCCTAACCCTGGGATCGGCGTGACCGATCAGG
TCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1296 bp | 431 aa | 233 | 1528 | + | No |
Chemistry : Unknow
ORF sequence :
MRERRVRRVAGLLRARLPELDLEAVPDVRAREGRWSLAEILTGVLLGIVAGARSLAEAEELTDGMSPAARRLASVPRRLPDTTARDALCAVPLDGLRAAL
HRLVRAAWRRKALTPVDLPVGVVALDGKVTALPTLNHPLIQNQHPDVGLPYGLARTVTCALVSAPGRPCIDAVPIPAETNEAGHFQHVLAGLVETYGALF
QVVTYDAGALSEANGAAVVAAGKDYVFALKNDHFTMVKLATELLDPHEIAARREDVLDNATTATREIQILAVDPSHGYGAGKGPEESVWSHARTFLRVTS
TVRRSGVVIERDSRLFVSSRAADQLTPDQWLQVVRAHWGVENNNHHTLDTAFAEDERPWIAADANGMLAVLLLRRIAYTLLALFRAVTLRSDDHRAMRWL
ALLRWVRDALIVLSAEHVENLRLRSLAVATR
HRLVRAAWRRKALTPVDLPVGVVALDGKVTALPTLNHPLIQNQHPDVGLPYGLARTVTCALVSAPGRPCIDAVPIPAETNEAGHFQHVLAGLVETYGALF
QVVTYDAGALSEANGAAVVAAGKDYVFALKNDHFTMVKLATELLDPHEIAARREDVLDNATTATREIQILAVDPSHGYGAGKGPEESVWSHARTFLRVTS
TVRRSGVVIERDSRLFVSSRAADQLTPDQWLQVVRAHWGVENNNHHTLDTAFAEDERPWIAADANGMLAVLLLRRIAYTLLALFRAVTLRSDDHRAMRWL
ALLRWVRDALIVLSAEHVENLRLRSLAVATR
Blast result :
Comments
ISAnsp9 is 44% aa similar to ISAli14.
In this sequence there were another possibility for ends of the sequence at coordinates (178-1548) with IRs of 17/18 and DR of 2.
There were 4 copies of this sequence in the genome.
In this sequence there were another possibility for ends of the sequence at coordinates (178-1548) with IRs of 17/18 and DR of 2.
There were 4 copies of this sequence in the genome.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Fields,M. and Richardson,P.(2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Fields,M. and Richardson,P.(2007) Direct submission GenBank.