ISMex34

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 658 bp

Ends


Left end : AATCCCACAGGGAGTTCCCCCGGCTTTGCCGGGGAGGCAGTAGGCGTTTGACGTTTTCGGCAGTGTCCATCGAAGAACATCTCTCCGTGAGCCGCCAAGC II struct. : Yes
Right end : CCGACCGGTGGTCCCACCATTGGGACCGCGTCAGCGATCCCTATAGCCGCCCTGGGCGGCCCAGATCGGAAAGCCCCCGGCTTTGCCGGGGGATGCTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTCTCGTAAGTTCTTTCCTATGCCttac

DNA sequence

AATCCCACAGGGAGTTCCCCCGGCTTTGCCGGGGAGGCAGTAGGCGTTTGACGTTTTCGGCAGTGTCCATCGAAGAACATCTCTCCGTGAGCCGCCAAGC
ACACGGGAAGATGTTCAACGATGGACGAGTTCGAGAGCTTAAGCCACACCAAGTGGACGTGCAAATACCACGTGGTCTTCATCCCAAAGGGACGTAGGAA
GGCGCTCTACGGGACGCTGCGCCCCCATCTCGGCGAGGTGTTCCGCACCCTGGCGCAGCAGAAGGAGAGCCGGATCGAGGAGGGGCATCTCCTGGCCGAT
CACGTGCACATGATGATCGCCATCCCTCCCAAATACGCCGTCTCTCAGGTGATCGGATACATCAAAGGCAAGAGCGCCATCCATCTCGCACGGGTGTATG
GCGAGCGCAGGCGCAATTTCGTTGGGCAGCACTTCTGGGCCAGGGGCTACTTCGTCTCGACCGTCGGTCGCGACGAGGCCGTGATCCGCGCCTACATCAA
GCAGCAGGAACAGGAGGACCAGCGCCTGGAGCAGTTGAACCTCTGGCGCTGACACCCACCGACCGGTGGTCCCACCATTGGGACCGCGTCAGCGATCCCT
ATAGCCGCCCTGGGCGGCCCAGATCGGAAAGCCCCCGGCTTTGCCGGGGGATGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
432 bp143 aa121552+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MDEFESLSHTKWTCKYHVVFIPKGRRKALYGTLRPHLGEVFRTLAQQKESRIEEGHLLADHVHMMIAIPPKYAVSQVIGYIKGKSAIHLARVYGERRRNF
VGQHFWARGYFVSTVGRDEAVIRAYIKQQEQEDQRLEQLNLWR

 

Blast result :
Comments
ISMex34 is 88% aa similar to ISCARN10.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.(2009)PLoS ONE Submitted.