ISMex28

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001511 ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1310 bp

Ends


IR Length : 16/18

IRL : CAGGGTGCTGCAAAAGTCGCTGGCAGCGTGGCTGGGGAGATGATTCACTC
IRR : CAGGCTGCTGCAGAAGTCCTGATTTGACGGTGGCGGAGATGGTTTTTGTC

Insertion site


Left flankDirect repeatRight flankDR Length
GGATCACGCTCTAGTTTGTCCCGG4

DNA sequence

CAGGGTGCTGCAAAAGTCGCTGGCAGCGTGGCTGGGGAGATGATTCACTCTGCCAACGGGGTTTGTGGAGTTTGAGCGATGCGGGGGCGAGAGGCTGGAT
CCGACAACCTGTTCAGCTACGTCCGGCTTGAGGAACGTGTACCGGCCGACCACCCGCTTCGGCCGATCCGGGCTCTGGCCGATGACGTGCTGGCCGGACT
GAACGAACGCTTCGAGAGCCTGTACTCGGGCCTGGGCCGGCCCTCGATCCCGCCGGAGATGTTGCTGCGAGCCACGCTCTTGCAGGCGTTCTTCTCGGTG
CGCTCCGAGCGGATGCTGATGGAGCAGATCGACTATTATCTCTTGTTCCGCTGGTTCGTGGGCCTGGAGATCGATGCGCCGGTCTGGCACCCGACAGTGT
TCACGCACACCCGCGACCGGCTCTTGGAGACGGAGGTGGCCCGTGCCTTCCTGTCGGGTCTGCTTTCGCTCAACCCGGTCAAGCGGTTTCTGTCGAGCGA
GCACTTCTCGGTCGATGGCACTATGATCGATGCCTGGGCCTCGATGAAGAGCTTCCGGCCCAAGGATGGCTCGGGCGAGCCGCCGGGGCCGGGCCGCAAT
GGCGAGCGCGACTTCCGCAAGGAGAAGCGCTCGAACGCGACGCATGCCTCGACCACCGACGCGGATGCGCGGCTCTACCGCAAGGCGGACGGCCAGGAGA
GCCGGCTGTGCTACCTCGGCCACGCGCTGATGGAGAACCGCAACGGCCTGGTGGTGGACGCCAGCCTGACCCACGCCACCGGCACGGCCGAGCGCGAGGC
CGCCCTGCTCATGCTCGATCGTCGTCCCCGCCGGCACCGGATCACGCTGGGTGCGGACAAGCTGTTCGATGTGGAGGCCTTCGTCGGCGATCTGCGGGCG
CGGCAAGTGACGCCGCACGTCGCCATCAACGGGGTCGTGTCGAAAACCAGGCAAGGTGCGCAAGACCGCCCTCGACGGCCGTACGACGCGCCATGCCGGC
TACGCGATCAGCCTGCGCTGCCGCAAGCGGATCGAGGAGGCCTTCGGCTGGATCAAAGCGCAGGCGGGGCTGAGGAAGGTCAAGCTGCGCGGGCGGGCCA
AGGTCGAGGCGCTGTTCACCTTCGCGGTGGCCGCCTACAACCTCGTGCGCCTGCCCAAGCTGCTGGCACCGCCGGCCGCCTGACCGGGCGACACCGCCCC
CCGGCGCGGCAGCCGGGGGGCCAACGCCGGCCCTCGCCGGTCAGGCAAAACCGTTCCGACGACAAAAACCATCTCCGCCACCGTCAAATCAGGACTTCTG
CAGCAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1105 bp367 aa791183+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGREAGSDNLFSYVRLEERVPADHPLRPIRALADDVLAGLNERFESLYSGLGRPSIPPEMLLRATLLQAFFSVRSERMLMEQIDYYLLFRWFVGLEIDA
PVWHPTVFTHTRDRLLETEVARAFLSGLLSLNPVKRFLSSEHFSVDGTMIDAWASMKSFRPKDGSGEPPGPGRNGERDFRKEKRSNATHASTTDADARLY
RKADGQESRLCYLGHALMENRNGLVVDASLTHATGTAEREAALLMLDRRPRRHRITLGADKLFDVEAFVGDLRARQVTPHVAINGVVSKTRKVRKTALDG
RTTRHAGYAISLRCRKRIEEAFGWIKAQAGLRKVKLRGRAKVEALFTFAVAAYNLVRLPKLLAPPAA

 

Blast result :
Comments
ISMex28 is 69% aa similar to ISCARN71. The transposase was reconstructed in silico by joining (77-950;951-1181).
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009)PLoS ONE Submitted.