ISAnsp6

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011145 ND Anaeromyxobacter sp.
Anaeromyxobacter sp. K
DNA section
IS Length : 1515 bp

Ends


IR Length : 11/15

IRL : CACGGTTGCCCAAAACAGGAGTTGAGGTCAGAGGCGCGGGATGATCTTCT
IRR : CAGGGTTGATCAGAATTCCTCGACGAGCACGTAGACACAGCGAACCCGCT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCGGAGGGCTGAGAGAGCGTGA3
TCACGCGCTCTGAGCGCGCGTCG3
GCCGCAGGCCTGAGAGCACGTGA3

DNA sequence

CACGGTTGCCCAAAACAGGAGTTGAGGTCAGAGGCGCGGGATGATCTTCTGCGCGCGATGACGCTCACGCCCCCGCCGACCGAGCCCGCCCAAGTTCGCC
GCAGGCAGCGCCGAGATCCCGATCCGCACTTCAAGCCGGACACGAGCCACCAGCTCGACGCGATCCTGGGCTGCCCGGCGGAGAGCGTCCCGAAGGATCA
TCTCGCCTGGGCGGTGCTCGAGATCGTCGAGCAGCTCGACACATCGGCGGTCGAGGCCGGCTACTCGTCGCTCGGCCGTCACGGTTATCACCCGAAGAGC
ACGCTCGCCGTCTGGGTGTACGCGAGCCTCATCGGACTTCATCACTCGACCAAGGTGGCCCGCGCGCTGGGGACGGACGCGGCGATGCGGCTCGTCGCAC
GTGGCGGGAAGCACTCGGGCGCGACGCTGCGCCGGTTCCGGCAGCGCAATGCCGTGCTGTTCGCCGCCGCCATCGACGCCACGGTGCGCCTCGCGCACGA
GCGCGGGCTGCTCGACGCGAAGGACCTCGCCATCGACAGCGTCCGAATCCGGGCGCACGCCTCGACGAAGGCGGTGAGGACGCGCGAGCGCTCCACGCGG
CGGCTCCGCGAACTCGAGGGGATCGATCCGCGAGACCTGCCGAAGGGCAGCCGGATGGAGCACGCGGCAAAGCTCAAGAAGCATCGCGAGGCGCTGGCGC
TGTGCGACGAGCGCGACGTCACGAACGTGGTGCTGACGAGCCCCGCGGCCGCACTGATGAAGTTCCCGTCGGGCGCGGGTCTGCCGGGTCATCGCGTCAC
CGTCACCGCGAGCGGGCAGAGGACCCGCTTCGTGATCTCCGTGCTGGTGGACGCGGCGACGAACGACTACGGCAAGCTCGAGGGAGCGGTGAACCAAGCG
CGAGAGGCCCTCCTGCGGGCGGGTGTGCCGGAGGAATCGAAGCTCCAGTTCGCCGCGGACGCAGGTTACTGGAGCGAGCCGGATCTTTCGTTCGCACTGC
GTTCCCGCGAGTGGGCCGACATCCTCGTCGCCGAACCCGGCAAGGAGAACGGGCATGACGACAGGACGGCTCCGTACTTTGGGCGGCGCGCCTTCGAGAT
CGACGGCGAAACCGCCGTCTGCCCGGCAGGCACGCGTATGCGCGGCCCCTATCAGGACTCGGCGGTCGGCCGGCTGAAGTGGATCGGCGTCGGCTGCGCG
GAGTGCCCGCAGAAGCCGCAGTGCACGCCCGGACGTGAGCGCGCCCTCACCGTGAGTCCGGCTGCGGAGGCGATGCGGGACCGGCTACAGGGCAAGGGGG
CACGCGAGCGCTACAACCGGCGCATCGCGACCGTTGAGCCGGTGTTCTCCGCCATCGAAGACACGATGGGGTTCCGTCGCGTCAGCTCGCGGCTCCCCGA
GACGGTCCGGGCGGAGATCCTGCTCAAGATCCTCGCCCACAACGTCGGTCGCCTCGTCACGGCGAAGCGGGTTCGCTGTGTCTACGTGCTCGTCGAGGAA
TTCTGATCAACCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1449 bp482 aa581506+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTLTPPPTEPAQVRRRQRRDPDPHFKPDTSHQLDAILGCPAESVPKDHLAWAVLEIVEQLDTSAVEAGYSSLGRHGYHPKSTLAVWVYASLIGLHHSTKV
ARALGTDAAMRLVARGGKHSGATLRRFRQRNAVLFAAAIDATVRLAHERGLLDAKDLAIDSVRIRAHASTKAVRTRERSTRRLRELEGIDPRDLPKGSRM
EHAAKLKKHREALALCDERDVTNVVLTSPAAALMKFPSGAGLPGHRVTVTASGQRTRFVISVLVDAATNDYGKLEGAVNQAREALLRAGVPEESKLQFAA
DAGYWSEPDLSFALRSREWADILVAEPGKENGHDDRTAPYFGRRAFEIDGETAVCPAGTRMRGPYQDSAVGRLKWIGVGCAECPQKPQCTPGRERALTVS
PAAEAMRDRLQGKGARERYNRRIATVEPVFSAIEDTMGFRRVSSRLPETVRAEILLKILAHNVGRLVTAKRVRCVYVLVEEF

 

Blast result :
Comments
ISAnsp6 is 37% aa similar to ISThsp1.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,Ovchinnikiva,G. and Beliaev,A. (2008) Direct submission GenBank