ISfinder Mirror Site

ISAcma39

Family IS200/IS605
Group IS200

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_009925	ND	Acaryochloris marina	Acaryochloris marina MBIC11017

DNA section

IS Length : 584 bp

Ends

Left end : TATCCTGTATAAGCCTGCGCTTTGAGCGCAGGACTCGTCAGGTTCCACCTATACCGCGGTAGAAAGGTCTCCTTTGAAGTCTTCAAAGGAGACAGAATGA II struct. : Yes
Right end : AGGAGCAAAAGCTTGAGCAATTGAACTTGTTTCGGGCGTAGCCCAAATCCCCTTTAAGGGGTTCTAATTCAAGCCTCCGGTTTTACCGGAGGTATCTGAC II struct. : Yes

Insertion site

Left flank	LE cleavage site	Right flank	RE cleavage site
CGCTTTGGCTAGATTGTC	TAAC	TTGTCGCTGACGC	tgac

DNA sequence

TATCCTGTATAAGCCTGCGCTTTGAGCGCAGGACTCGTCAGGTTCCACCTATACCGCGGTAGAAAGGTCTCCTTTGAAGTCTTCAAAGGAGACAGAATGA
CATATCGCAAGTTATCCCATAGTGTGTGGGAATGCAAATATCATGTAGTATTTGTGCCGAAATATCGAAAGAGAAGAATATATGGACGAATTAGGCAGAA
TTTAGGTGATATATTTCATGAACTGGCACGACATAAAGAGAGTGCCATAGAAGAAGGCCATTTAATGCTAGATCATGTTCATATGTTGTTGAGTATTCCG
CCGAAATACTCTGTGTCCAATGTGGTGGGCTATGTAAAAGGTAAGAGTGCCATTTATATCGCTCGAGAGTTAGGCAATAGCCGGAATGCGACAGGCCATA
AGTTTTGGTCTAGAGGGTATTTTGTCTCAACAGTCGGCAGAGATGAGGAAGTGATTCGTCGATATATCAGACATCAGGAACAAGAGGAGCAAAAGCTTGA
GCAATTGAACTTGTTTCGGGCGTAGCCCAAATCCCCTTTAAGGGGTTCTAATTCAAGCCTCCGGTTTTACCGGAGGTATCTGAC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
429 bp	142 aa	102	530	+	No

ORF function : Transposase
Chemistry : Y1

ORF sequence :

MTYRKLSHSVWECKYHVVFVPKYRKRRIYGRIRQNLGDIFHELARHKESAIEEGHLMLDHVHMLLSIPPKYSVSNVVGYVKGKSAIYIARELGNSRNATG
HKFWSRGYFVSTVGRDEEVIRRYIRHQEQEEQKLEQLNLFRA

Blast result :

Comments

ISAcma39 is 86% aa similar to ISCARN10.

References

1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)