ISStma7

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010943 ND Stenotrophomonas maltophilia
Stenotrophomonas maltophilia K279a
DNA section
IS Length : 1223 bp

Ends


Left end : TATCTGATGAAAATCTGTCAGCGTAGGTGTCGAGAGCCGGCGTGGGCCGCCGTACGAGCCTGGATCTCGACGATCGCCATGTAGCTTGGCGCCCACGCCG
Right end : GCCAGCCAGGGCGCAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTCTCATGGAGGGGCCAAGTCCCTCCATCAACACAGTTGCTACA

Insertion site


Left flankDirect repeatRight flankDR Length
TGGATGGCGCGACCGAGCCTTGGACGTATTTACGGCGTCC0
TGGATGCGGCGACCAAGCCTTGGACGTATTTACGGCGTCC0
TGGATGCGGCGACCAAGCCTTGGAGGTATTTACGGCGTCC0
TGGATGCGGCGACCGAGCCTTGGACGTATTTACGGCGTCC0
TGGATGCGGCGACCGAGCCTAGGACGTATTCACGGCGTCC0
TGGATGCGGCTGCCAAGCCTCGGACGTACTTGCGGCGTCC0

DNA sequence

TATCTGATGAAAATCTGTCAGCGTAGGTGTCGAGAGCCGGCGTGGGCCGCCGTACGAGCCTGGATCTCGACGATCGCCATGTAGCTTGGCGCCCACGCCG
GAATCTCCCTTGATCCGCCCGAACAGTTGCTGGAGCTGACACTCGAAGCGATAAGACTGGGCAAGCGGGGGAGCTCTCGACCCTTCCAGACTATACGGAG
TCGGGCAATGAACGGGATCGGGATCGATGTGAGCAAGCGCCGATTGGATATCGGCACGACAGACGGCCAGACCCTGCAGGTCAGCAATAGCCCCTCTGGC
TATGCCGAGTTGAGCACTTGGTTGAGTACGCGGCCGGCCATTCAGATCGTTTTGGAAGCCACCGGCGGCTATGAGCAGACTGTCCTGGACTTCCTTCACA
AGGCCGGCCATCCGGTGATCCGTGCCAACGCACTGCGAGCGCGTAGACTGGCTCAGGGGCTGGGTAAAGTGGCCAAGACGGACCGCTTGGACGCTCTTGT
ATTGGCGCAGATGGCCGCGCTGGTGGAATTGCCTTCCTATCAGCCGCTGGAGCCCTGGCAGCGGAAACTGCGTGAGTTTGTGCGGGCGCGTCGACAAACG
ATGCAGGCACTGACCGTAGCCCGCCAACAGCAGGAAATGGTGACTGACCGCGAGCTACGCCGGCAGATGCAAGGCAACATCATTCGCCTGCAAACACTGG
TCGAGCGGCTGGGCAAGCAGATCTCTGAACAGGTCGCGCAGCAGCCTCAACTGGCAGTGCTGAAGTCAATGAAAGGGGTCGGCCCGGCATTGCAGGCGGT
ACTGGCCAGCTACCTGCCTGAGTTGGGTCAGATCAGCGGAAAAGCCATTGCCAGCCTGGTCGGCGTGGCGCCGATCTCCCACGACAGCGGAGCCATGCGA
GGGAGGCGAAGCATCCATGGCGGCAGGGCCGAGATCCGCCAGGTGCTCTACATGGCAGCCATGTCGGCCATGCGACATGAGCCACGATTGCGGGACTTTT
ACCGGTCGCTGCGGGCCCGCGGCAAGGAAGGAAAAGTAGCGATCGTGGCGGTGATGAGGAAGATGCTGGTGATCCTCAACGCCCGGGTGCGCGACGCTGA
AAACGGGCTGGTCCCTGCCTAAGGCCAGCCAGGGCGCAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTCTCATGGAGGGGCCAAGTC
CCTCCATCAACACAGTTGCTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
915 bp304 aa2081122+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNGIGIDVSKRRLDIGTTDGQTLQVSNSPSGYAELSTWLSTRPAIQIVLEATGGYEQTVLDFLHKAGHPVIRANALRARRLAQGLGKVAKTDRLDALVLA
QMAALVELPSYQPLEPWQRKLREFVRARRQTMQALTVARQQQEMVTDRELRRQMQGNIIRLQTLVERLGKQISEQVAQQPQLAVLKSMKGVGPALQAVLA
SYLPELGQISGKAIASLVGVAPISHDSGAMRGRRSIHGGRAEIRQVLYMAAMSAMRHEPRLRDFYRSLRARGKEGKVAIVAVMRKMLVILNARVRDAENG
LVPA

 

Blast result :
Comments
ISStma7 is 60% aa similar to ISAli16. There are 6 copies in the genome.
References
1] ISfinder annotation (2009)
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74