ISStma7
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010943 | ND | Stenotrophomonas maltophilia | Stenotrophomonas maltophilia K279a |
DNA section
IS Length : 1223 bp
Ends
Left end : TATCTGATGAAAATCTGTCAGCGTAGGTGTCGAGAGCCGGCGTGGGCCGCCGTACGAGCCTGGATCTCGACGATCGCCATGTAGCTTGGCGCCCACGCCG
Right end : GCCAGCCAGGGCGCAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTCTCATGGAGGGGCCAAGTCCCTCCATCAACACAGTTGCTACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGATGGCGCGACCGAGCCT | TGGACGTATTTACGGCGTCC | 0 | |
TGGATGCGGCGACCAAGCCT | TGGACGTATTTACGGCGTCC | 0 | |
TGGATGCGGCGACCAAGCCT | TGGAGGTATTTACGGCGTCC | 0 | |
TGGATGCGGCGACCGAGCCT | TGGACGTATTTACGGCGTCC | 0 | |
TGGATGCGGCGACCGAGCCT | AGGACGTATTCACGGCGTCC | 0 | |
TGGATGCGGCTGCCAAGCCT | CGGACGTACTTGCGGCGTCC | 0 |
DNA sequence
TATCTGATGAAAATCTGTCAGCGTAGGTGTCGAGAGCCGGCGTGGGCCGCCGTACGAGCCTGGATCTCGACGATCGCCATGTAGCTTGGCGCCCACGCCG
GAATCTCCCTTGATCCGCCCGAACAGTTGCTGGAGCTGACACTCGAAGCGATAAGACTGGGCAAGCGGGGGAGCTCTCGACCCTTCCAGACTATACGGAG
TCGGGCAATGAACGGGATCGGGATCGATGTGAGCAAGCGCCGATTGGATATCGGCACGACAGACGGCCAGACCCTGCAGGTCAGCAATAGCCCCTCTGGC
TATGCCGAGTTGAGCACTTGGTTGAGTACGCGGCCGGCCATTCAGATCGTTTTGGAAGCCACCGGCGGCTATGAGCAGACTGTCCTGGACTTCCTTCACA
AGGCCGGCCATCCGGTGATCCGTGCCAACGCACTGCGAGCGCGTAGACTGGCTCAGGGGCTGGGTAAAGTGGCCAAGACGGACCGCTTGGACGCTCTTGT
ATTGGCGCAGATGGCCGCGCTGGTGGAATTGCCTTCCTATCAGCCGCTGGAGCCCTGGCAGCGGAAACTGCGTGAGTTTGTGCGGGCGCGTCGACAAACG
ATGCAGGCACTGACCGTAGCCCGCCAACAGCAGGAAATGGTGACTGACCGCGAGCTACGCCGGCAGATGCAAGGCAACATCATTCGCCTGCAAACACTGG
TCGAGCGGCTGGGCAAGCAGATCTCTGAACAGGTCGCGCAGCAGCCTCAACTGGCAGTGCTGAAGTCAATGAAAGGGGTCGGCCCGGCATTGCAGGCGGT
ACTGGCCAGCTACCTGCCTGAGTTGGGTCAGATCAGCGGAAAAGCCATTGCCAGCCTGGTCGGCGTGGCGCCGATCTCCCACGACAGCGGAGCCATGCGA
GGGAGGCGAAGCATCCATGGCGGCAGGGCCGAGATCCGCCAGGTGCTCTACATGGCAGCCATGTCGGCCATGCGACATGAGCCACGATTGCGGGACTTTT
ACCGGTCGCTGCGGGCCCGCGGCAAGGAAGGAAAAGTAGCGATCGTGGCGGTGATGAGGAAGATGCTGGTGATCCTCAACGCCCGGGTGCGCGACGCTGA
AAACGGGCTGGTCCCTGCCTAAGGCCAGCCAGGGCGCAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTCTCATGGAGGGGCCAAGTC
CCTCCATCAACACAGTTGCTACA
GAATCTCCCTTGATCCGCCCGAACAGTTGCTGGAGCTGACACTCGAAGCGATAAGACTGGGCAAGCGGGGGAGCTCTCGACCCTTCCAGACTATACGGAG
TCGGGCAATGAACGGGATCGGGATCGATGTGAGCAAGCGCCGATTGGATATCGGCACGACAGACGGCCAGACCCTGCAGGTCAGCAATAGCCCCTCTGGC
TATGCCGAGTTGAGCACTTGGTTGAGTACGCGGCCGGCCATTCAGATCGTTTTGGAAGCCACCGGCGGCTATGAGCAGACTGTCCTGGACTTCCTTCACA
AGGCCGGCCATCCGGTGATCCGTGCCAACGCACTGCGAGCGCGTAGACTGGCTCAGGGGCTGGGTAAAGTGGCCAAGACGGACCGCTTGGACGCTCTTGT
ATTGGCGCAGATGGCCGCGCTGGTGGAATTGCCTTCCTATCAGCCGCTGGAGCCCTGGCAGCGGAAACTGCGTGAGTTTGTGCGGGCGCGTCGACAAACG
ATGCAGGCACTGACCGTAGCCCGCCAACAGCAGGAAATGGTGACTGACCGCGAGCTACGCCGGCAGATGCAAGGCAACATCATTCGCCTGCAAACACTGG
TCGAGCGGCTGGGCAAGCAGATCTCTGAACAGGTCGCGCAGCAGCCTCAACTGGCAGTGCTGAAGTCAATGAAAGGGGTCGGCCCGGCATTGCAGGCGGT
ACTGGCCAGCTACCTGCCTGAGTTGGGTCAGATCAGCGGAAAAGCCATTGCCAGCCTGGTCGGCGTGGCGCCGATCTCCCACGACAGCGGAGCCATGCGA
GGGAGGCGAAGCATCCATGGCGGCAGGGCCGAGATCCGCCAGGTGCTCTACATGGCAGCCATGTCGGCCATGCGACATGAGCCACGATTGCGGGACTTTT
ACCGGTCGCTGCGGGCCCGCGGCAAGGAAGGAAAAGTAGCGATCGTGGCGGTGATGAGGAAGATGCTGGTGATCCTCAACGCCCGGGTGCGCGACGCTGA
AAACGGGCTGGTCCCTGCCTAAGGCCAGCCAGGGCGCAAGACCAAAGGCTGCCGGCCAGCGGCCGGCACTACCGTGCCCGTCTCATGGAGGGGCCAAGTC
CCTCCATCAACACAGTTGCTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
915 bp | 304 aa | 208 | 1122 | + | No |
Chemistry : DEDD
ORF sequence :
MNGIGIDVSKRRLDIGTTDGQTLQVSNSPSGYAELSTWLSTRPAIQIVLEATGGYEQTVLDFLHKAGHPVIRANALRARRLAQGLGKVAKTDRLDALVLA
QMAALVELPSYQPLEPWQRKLREFVRARRQTMQALTVARQQQEMVTDRELRRQMQGNIIRLQTLVERLGKQISEQVAQQPQLAVLKSMKGVGPALQAVLA
SYLPELGQISGKAIASLVGVAPISHDSGAMRGRRSIHGGRAEIRQVLYMAAMSAMRHEPRLRDFYRSLRARGKEGKVAIVAVMRKMLVILNARVRDAENG
LVPA
QMAALVELPSYQPLEPWQRKLREFVRARRQTMQALTVARQQQEMVTDRELRRQMQGNIIRLQTLVERLGKQISEQVAQQPQLAVLKSMKGVGPALQAVLA
SYLPELGQISGKAIASLVGVAPISHDSGAMRGRRSIHGGRAEIRQVLYMAAMSAMRHEPRLRDFYRSLRARGKEGKVAIVAVMRKMLVILNARVRDAENG
LVPA
Blast result :
Comments
ISStma7 is 60% aa similar to ISAli16. There are 6 copies in the genome.
References
1] ISfinder annotation (2009)
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74