ISStma6
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010943 | ND | Stenotrophomonas maltophilia | Stenotrophomonas maltophilia K279a |
DNA section
IS Length : 1093 bp
Ends
Left end : GGCGACCGTGTGGATCCAGGTCTTGCGACCGAGAAGTAGCTTGGGTCCCCACGCCGGATTCTCCCTGAACCGCCCGAACAGTTGGTTGAGTTGGCGCTCG
Right end : GCGCTCGTGGCGGTCATGCGCAAAATGCTGGTGATCCTCAACGCCCGTAAGCGAGACGCCGAGGTGGCCCTCGGCTGCCCCTGACAAGACAGTTGCTACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTGCCGAGAGCCCGGCGTG | GGGGCTACCGGATTGGGTCC | 0 | |
GGTGCCGAGAGCCCGGCGTG | GGGTGCAGCTTTTGCCTTTG | 0 | |
GGTGCCGAGAGCCCGGCGTG | TCAGCGCTTCCCCGTCCAAC | 0 | |
GGTGCCGAGAGCCCGGCGTG | GACCACCACCCACGGGAATG | 0 | |
GCCGACCGTTGGTCGGCACT | GCCGAGCGGCTTCTACTGCC | 0 |
DNA sequence
GGCGACCGTGTGGATCCAGGTCTTGCGACCGAGAAGTAGCTTGGGTCCCCACGCCGGATTCTCCCTGAACCGCCCGAACAGTTGGTTGAGTTGGCGCTCG
AACTGATAAGACTGGGCAAGCGGGGAGAGCTCTCGACCCTGTCAGCCTAGCGGAGTTCTGCCATGTTTGGGATCGGGATCGATGTGAGCAAAGCCACGCT
GGATGTGGCCGTCCATGGAGAGCAGTTTCGCCAATTCAGCAACGACAAGCGCGGCTTTGTGCGCTTGATTCGGTGGCTGAAGACGTGGCCGATCAAGCAG
GTCGTTCTTGAGGCAAGCGGGGGTTACGAGCGTGCTGCTCTGGATGTATTGCACGCCGCTGGCCTGCCGATGGTACGAATCAATCCGGCGCGTGCACGGC
GATTTGCCCAAGGCACGGGCCGTGCCGCCAAGACCGATCGGCTCGATGCGACAGTGCTGGCACAGATGGCCCATTTGTTGCCGCTGACCCGCTACGTACC
GCCTGCTCCTTGGCAGCAGCGTCTGGCTGAATTTGCGCAATGCCGCAGGCAACTGGTGCAGATGCGGGTCAGTGAGATGCAGCGCTTGCGGCGATTGGTC
GATCCGGATCTGATTGCGATGAAGCAACGCCATATAGCTCAGCTATCTGACGACCTGAAGCAGTTGGATAAAGCTATTGCCGAGCAGCTTGAGGGGCAGC
CTGGCTGGAAGAATATCGGCGCGCTCAAAGGCGTCGGCCCCATCCTGATCAGCACACTGGCCTGCGAGTTGCCCGAACTGGGCAGCTTGGGAAGCAAAGC
CATAGCATCGCTGGTGGGGTTGGCCCCGATGAACCGCGAAAGTGGCACCTGGCAGGGCCAACGGCGGATCAGTGGTGGGCGCGCGGTGGTACGCGAAGCC
CTTTACATGGCGGCCCTGACGGCCATCCGGTACGAGCCAAGGCTGCGCGCGTTTTACGCTGGCCTGAAGGCCAAGGGCAAAGCGAGCAAGGTGGCGCTCG
TGGCGGTCATGCGCAAAATGCTGGTGATCCTCAACGCCCGTAAGCGAGACGCCGAGGTGGCCCTCGGCTGCCCCTGACAAGACAGTTGCTACT
AACTGATAAGACTGGGCAAGCGGGGAGAGCTCTCGACCCTGTCAGCCTAGCGGAGTTCTGCCATGTTTGGGATCGGGATCGATGTGAGCAAAGCCACGCT
GGATGTGGCCGTCCATGGAGAGCAGTTTCGCCAATTCAGCAACGACAAGCGCGGCTTTGTGCGCTTGATTCGGTGGCTGAAGACGTGGCCGATCAAGCAG
GTCGTTCTTGAGGCAAGCGGGGGTTACGAGCGTGCTGCTCTGGATGTATTGCACGCCGCTGGCCTGCCGATGGTACGAATCAATCCGGCGCGTGCACGGC
GATTTGCCCAAGGCACGGGCCGTGCCGCCAAGACCGATCGGCTCGATGCGACAGTGCTGGCACAGATGGCCCATTTGTTGCCGCTGACCCGCTACGTACC
GCCTGCTCCTTGGCAGCAGCGTCTGGCTGAATTTGCGCAATGCCGCAGGCAACTGGTGCAGATGCGGGTCAGTGAGATGCAGCGCTTGCGGCGATTGGTC
GATCCGGATCTGATTGCGATGAAGCAACGCCATATAGCTCAGCTATCTGACGACCTGAAGCAGTTGGATAAAGCTATTGCCGAGCAGCTTGAGGGGCAGC
CTGGCTGGAAGAATATCGGCGCGCTCAAAGGCGTCGGCCCCATCCTGATCAGCACACTGGCCTGCGAGTTGCCCGAACTGGGCAGCTTGGGAAGCAAAGC
CATAGCATCGCTGGTGGGGTTGGCCCCGATGAACCGCGAAAGTGGCACCTGGCAGGGCCAACGGCGGATCAGTGGTGGGCGCGCGGTGGTACGCGAAGCC
CTTTACATGGCGGCCCTGACGGCCATCCGGTACGAGCCAAGGCTGCGCGCGTTTTACGCTGGCCTGAAGGCCAAGGGCAAAGCGAGCAAGGTGGCGCTCG
TGGCGGTCATGCGCAAAATGCTGGTGATCCTCAACGCCCGTAAGCGAGACGCCGAGGTGGCCCTCGGCTGCCCCTGACAAGACAGTTGCTACT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
915 bp | 304 aa | 163 | 1077 | + | No |
Chemistry : DEDD
ORF sequence :
MFGIGIDVSKATLDVAVHGEQFRQFSNDKRGFVRLIRWLKTWPIKQVVLEASGGYERAALDVLHAAGLPMVRINPARARRFAQGTGRAAKTDRLDATVLA
QMAHLLPLTRYVPPAPWQQRLAEFAQCRRQLVQMRVSEMQRLRRLVDPDLIAMKQRHIAQLSDDLKQLDKAIAEQLEGQPGWKNIGALKGVGPILISTLA
CELPELGSLGSKAIASLVGLAPMNRESGTWQGQRRISGGRAVVREALYMAALTAIRYEPRLRAFYAGLKAKGKASKVALVAVMRKMLVILNARKRDAEVA
LGCP
QMAHLLPLTRYVPPAPWQQRLAEFAQCRRQLVQMRVSEMQRLRRLVDPDLIAMKQRHIAQLSDDLKQLDKAIAEQLEGQPGWKNIGALKGVGPILISTLA
CELPELGSLGSKAIASLVGLAPMNRESGTWQGQRRISGGRAVVREALYMAALTAIRYEPRLRAFYAGLKAKGKASKVALVAVMRKMLVILNARKRDAEVA
LGCP
Blast result :
Comments
ISStma6 is 57% aa similar to ISHne3. There are 5 copies in the genome.
References
1] ISfinder annotation (2009)
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74