ISEfa11

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FJ866609 ND Enterococcus faecium
Enterococcus faecium C864
DNA section
IS Length : 1514 bp

Ends


IR Length : 17/26

IRL : GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCA
IRR : GGCTCTTTGTCAATAAGGACTGATGAGTTGTGCAAAATCAAATCTGAGTC

Insertion site


Left flankDirect repeatRight flankDR Length
GATAACGCTAACAAAAACGCACATAGAC8

DNA sequence

GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCATTTTCATTTTAGGTATTAAAAAACATATCGTTCTCTAGTATGATTAAATC
ACCACAAAATAAACAACTGAGAGGACGATACGCTATATGAATGATTCTATCAAAAAAATGCTGAGAATAACAGAGAAAGATTTGATGATTACAGAGGTCT
CTTACGAGACCCTTCAGAAGAAAAAGACGTTGGTCGTCGATGCTGTTCTCTCGCCTACTCCTCGTGCTTGTAGAAGTTGTGGTTCTACTGTGGTAGATGG
AAACGGGAAAGCAATTATAGTGAAAAATGGAAAAAAGGAAACGATTGTCCGTTTTGAACAATACAATCATATGCCTTTGGTTATGCGCCTAAAAAAGCAA
CGCTATACCTGTAAAAACTGTCGCACCCATTGGACGGCTCAAAGTTATTTTGTCCAACCCAGACATTCAATCGCAAATCATGTTAGATATAAAATTGCTT
CTTTACTGACTGAAAAAGTATCTTTATCTTTTATTGCGAAAAGCTGTCAGGTATCTTTGACCACCGTTATTCGTACATTGAAAGAGTTTAAAAGCTATTT
ACCAAAGCAATCTAAGAAGATCCTCCCCAGAGTATTGATGGTTGACGAATTTCGTTCGCATGCTTCCATAAAAGATAAGATGAGCTTTATTTGCGCGGAT
GGCGAAACAGGAAAATTAATAGATGTTTTGCCTACGCGTAAATTACCTCGATTAACAAGCTATTTCTTAGGTTGTACCAATCCAGAAGAAGTAGAATTCT
TGGTGACAGACATGAACGCCGCCTACTTCCAGCTCACCAAACGTGTTCTGCCAAATGCGAAAGTCGTGATTGATCGGTTTCATATTGTCAAACACATGAA
TCAAGCGTTCAATGAGTTGCGTATCCGTGAAATGAATGAACTTCGTAAAGCCGGACAGAAAAGCCAGGCAGAAAAACTGAAAAAGAACTGGCGCTTTTTG
CTAAAAAATCGTGCAAACATCAACCATTATGAATACAAAACATGGAAAAGTTTCCGAGCACCAAAATACCCATTTCTTACTGAAGCAATGATGATTGATC
GATTGCTTGAGTTTTCTCCGCCCCTAAAGGAGGCGTATCCCTTTTTTCATGAATTAGTTGAAGCCTTTCGAGACAAAGACCCTGACTTATTTTTCTCCTT
ATTGGCAGAACTTCCCGAAACGTTAGATGACAGCTTTCGGGAAAAGCTTCAAAACCTTCTGACCTATGAAGAAGGCATCACCAACGCAATGATCTATCCT
TATTCCAATGGAAAAATAGAAGCGAAGAATACCCACATAAAGACAATGAAACGAGTATCCTACGGATTTAAATCATTTGAGAACATGAGAATTAGAATCT
TTTTGATCAATCAATTAATCAATGTAAGATAACAAAAAATCTGAGCCAGAATGTGGTTCATTCTGACTCAGATTTGATTTTGCACAACTCATCAGTCCTT
ATTGACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1296 bp431 aa1371432+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNDSIKKMLRITEKDLMITEVSYETLQKKKTLVVDAVLSPTPRACRSCGSTVVDGNGKAIIVKNGKKETIVRFEQYNHMPLVMRLKKQRYTCKNCRTHWT
AQSYFVQPRHSIANHVRYKIASLLTEKVSLSFIAKSCQVSLTTVIRTLKEFKSYLPKQSKKILPRVLMVDEFRSHASIKDKMSFICADGETGKLIDVLPT
RKLPRLTSYFLGCTNPEEVEFLVTDMNAAYFQLTKRVLPNAKVVIDRFHIVKHMNQAFNELRIREMNELRKAGQKSQAEKLKKNWRFLLKNRANINHYEY
KTWKSFRAPKYPFLTEAMMIDRLLEFSPPLKEAYPFFHELVEAFRDKDPDLFFSLLAELPETLDDSFREKLQNLLTYEEGITNAMIYPYSNGKIEAKNTH
IKTMKRVSYGFKSFENMRIRIFLINQLINVR

 

Blast result :
Comments
Complete IS element detected inside vanS of Enterococcus faecium C864 isolated in Spain.
ISEfa11 is 94% nts and 93% aa similar to ISEfa5.
References
1] Carmen Torres (2009) Direct submission.