ISEfa11
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FJ866609 | ND | Enterococcus faecium | Enterococcus faecium C864 |
DNA section
IS Length : 1514 bp
Ends
IR Length : 17/26
IRL : GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCA
IRR : GGCTCTTTGTCAATAAGGACTGATGAGTTGTGCAAAATCAAATCTGAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATAACGCTA | ACAAAAAC | GCACATAGAC | 8 |
DNA sequence
GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCATTTTCATTTTAGGTATTAAAAAACATATCGTTCTCTAGTATGATTAAATC
ACCACAAAATAAACAACTGAGAGGACGATACGCTATATGAATGATTCTATCAAAAAAATGCTGAGAATAACAGAGAAAGATTTGATGATTACAGAGGTCT
CTTACGAGACCCTTCAGAAGAAAAAGACGTTGGTCGTCGATGCTGTTCTCTCGCCTACTCCTCGTGCTTGTAGAAGTTGTGGTTCTACTGTGGTAGATGG
AAACGGGAAAGCAATTATAGTGAAAAATGGAAAAAAGGAAACGATTGTCCGTTTTGAACAATACAATCATATGCCTTTGGTTATGCGCCTAAAAAAGCAA
CGCTATACCTGTAAAAACTGTCGCACCCATTGGACGGCTCAAAGTTATTTTGTCCAACCCAGACATTCAATCGCAAATCATGTTAGATATAAAATTGCTT
CTTTACTGACTGAAAAAGTATCTTTATCTTTTATTGCGAAAAGCTGTCAGGTATCTTTGACCACCGTTATTCGTACATTGAAAGAGTTTAAAAGCTATTT
ACCAAAGCAATCTAAGAAGATCCTCCCCAGAGTATTGATGGTTGACGAATTTCGTTCGCATGCTTCCATAAAAGATAAGATGAGCTTTATTTGCGCGGAT
GGCGAAACAGGAAAATTAATAGATGTTTTGCCTACGCGTAAATTACCTCGATTAACAAGCTATTTCTTAGGTTGTACCAATCCAGAAGAAGTAGAATTCT
TGGTGACAGACATGAACGCCGCCTACTTCCAGCTCACCAAACGTGTTCTGCCAAATGCGAAAGTCGTGATTGATCGGTTTCATATTGTCAAACACATGAA
TCAAGCGTTCAATGAGTTGCGTATCCGTGAAATGAATGAACTTCGTAAAGCCGGACAGAAAAGCCAGGCAGAAAAACTGAAAAAGAACTGGCGCTTTTTG
CTAAAAAATCGTGCAAACATCAACCATTATGAATACAAAACATGGAAAAGTTTCCGAGCACCAAAATACCCATTTCTTACTGAAGCAATGATGATTGATC
GATTGCTTGAGTTTTCTCCGCCCCTAAAGGAGGCGTATCCCTTTTTTCATGAATTAGTTGAAGCCTTTCGAGACAAAGACCCTGACTTATTTTTCTCCTT
ATTGGCAGAACTTCCCGAAACGTTAGATGACAGCTTTCGGGAAAAGCTTCAAAACCTTCTGACCTATGAAGAAGGCATCACCAACGCAATGATCTATCCT
TATTCCAATGGAAAAATAGAAGCGAAGAATACCCACATAAAGACAATGAAACGAGTATCCTACGGATTTAAATCATTTGAGAACATGAGAATTAGAATCT
TTTTGATCAATCAATTAATCAATGTAAGATAACAAAAAATCTGAGCCAGAATGTGGTTCATTCTGACTCAGATTTGATTTTGCACAACTCATCAGTCCTT
ATTGACAAAGAGCC
ACCACAAAATAAACAACTGAGAGGACGATACGCTATATGAATGATTCTATCAAAAAAATGCTGAGAATAACAGAGAAAGATTTGATGATTACAGAGGTCT
CTTACGAGACCCTTCAGAAGAAAAAGACGTTGGTCGTCGATGCTGTTCTCTCGCCTACTCCTCGTGCTTGTAGAAGTTGTGGTTCTACTGTGGTAGATGG
AAACGGGAAAGCAATTATAGTGAAAAATGGAAAAAAGGAAACGATTGTCCGTTTTGAACAATACAATCATATGCCTTTGGTTATGCGCCTAAAAAAGCAA
CGCTATACCTGTAAAAACTGTCGCACCCATTGGACGGCTCAAAGTTATTTTGTCCAACCCAGACATTCAATCGCAAATCATGTTAGATATAAAATTGCTT
CTTTACTGACTGAAAAAGTATCTTTATCTTTTATTGCGAAAAGCTGTCAGGTATCTTTGACCACCGTTATTCGTACATTGAAAGAGTTTAAAAGCTATTT
ACCAAAGCAATCTAAGAAGATCCTCCCCAGAGTATTGATGGTTGACGAATTTCGTTCGCATGCTTCCATAAAAGATAAGATGAGCTTTATTTGCGCGGAT
GGCGAAACAGGAAAATTAATAGATGTTTTGCCTACGCGTAAATTACCTCGATTAACAAGCTATTTCTTAGGTTGTACCAATCCAGAAGAAGTAGAATTCT
TGGTGACAGACATGAACGCCGCCTACTTCCAGCTCACCAAACGTGTTCTGCCAAATGCGAAAGTCGTGATTGATCGGTTTCATATTGTCAAACACATGAA
TCAAGCGTTCAATGAGTTGCGTATCCGTGAAATGAATGAACTTCGTAAAGCCGGACAGAAAAGCCAGGCAGAAAAACTGAAAAAGAACTGGCGCTTTTTG
CTAAAAAATCGTGCAAACATCAACCATTATGAATACAAAACATGGAAAAGTTTCCGAGCACCAAAATACCCATTTCTTACTGAAGCAATGATGATTGATC
GATTGCTTGAGTTTTCTCCGCCCCTAAAGGAGGCGTATCCCTTTTTTCATGAATTAGTTGAAGCCTTTCGAGACAAAGACCCTGACTTATTTTTCTCCTT
ATTGGCAGAACTTCCCGAAACGTTAGATGACAGCTTTCGGGAAAAGCTTCAAAACCTTCTGACCTATGAAGAAGGCATCACCAACGCAATGATCTATCCT
TATTCCAATGGAAAAATAGAAGCGAAGAATACCCACATAAAGACAATGAAACGAGTATCCTACGGATTTAAATCATTTGAGAACATGAGAATTAGAATCT
TTTTGATCAATCAATTAATCAATGTAAGATAACAAAAAATCTGAGCCAGAATGTGGTTCATTCTGACTCAGATTTGATTTTGCACAACTCATCAGTCCTT
ATTGACAAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1296 bp | 431 aa | 137 | 1432 | + | No |
Chemistry : Unknow
ORF sequence :
MNDSIKKMLRITEKDLMITEVSYETLQKKKTLVVDAVLSPTPRACRSCGSTVVDGNGKAIIVKNGKKETIVRFEQYNHMPLVMRLKKQRYTCKNCRTHWT
AQSYFVQPRHSIANHVRYKIASLLTEKVSLSFIAKSCQVSLTTVIRTLKEFKSYLPKQSKKILPRVLMVDEFRSHASIKDKMSFICADGETGKLIDVLPT
RKLPRLTSYFLGCTNPEEVEFLVTDMNAAYFQLTKRVLPNAKVVIDRFHIVKHMNQAFNELRIREMNELRKAGQKSQAEKLKKNWRFLLKNRANINHYEY
KTWKSFRAPKYPFLTEAMMIDRLLEFSPPLKEAYPFFHELVEAFRDKDPDLFFSLLAELPETLDDSFREKLQNLLTYEEGITNAMIYPYSNGKIEAKNTH
IKTMKRVSYGFKSFENMRIRIFLINQLINVR
AQSYFVQPRHSIANHVRYKIASLLTEKVSLSFIAKSCQVSLTTVIRTLKEFKSYLPKQSKKILPRVLMVDEFRSHASIKDKMSFICADGETGKLIDVLPT
RKLPRLTSYFLGCTNPEEVEFLVTDMNAAYFQLTKRVLPNAKVVIDRFHIVKHMNQAFNELRIREMNELRKAGQKSQAEKLKKNWRFLLKNRANINHYEY
KTWKSFRAPKYPFLTEAMMIDRLLEFSPPLKEAYPFFHELVEAFRDKDPDLFFSLLAELPETLDDSFREKLQNLLTYEEGITNAMIYPYSNGKIEAKNTH
IKTMKRVSYGFKSFENMRIRIFLINQLINVR
Blast result :
Comments
Complete IS element detected inside vanS of Enterococcus faecium C864 isolated in Spain.
ISEfa11 is 94% nts and 93% aa similar to ISEfa5.
ISEfa11 is 94% nts and 93% aa similar to ISEfa5.
References
1] Carmen Torres (2009) Direct submission.