ISfinder Mirror Site

ISVsa4

Family IS6
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_011311	ND	Aliivibrio salmonicida	Aliivibrio salmonicida LFI1238 plasmid pVSAL840

DNA section

IS Length : 861 bp

Ends

IR Length : 15/18

IRL : GGGGTTGTTGCAAAAAATTCAGTTTAACGCCAAGATCCCACAATCCTTCA
IRR : GGGGCTGTTGCAACTAATCTGAGTCAGTAAATAAGTCCTACAATAGACTT

Insertion site

Left flank	Direct repeat	Right flank	DR Length

DNA sequence

GGGGTTGTTGCAAAAAATTCAGTTTAACGCCAAGATCCCACAATCCTTCATACTATTTCGTAGCCAATGACCAATCCTGACTTTAAATGGAAACACTTTG
CACCAGAAATTATACTTTGGTGTTTACGTTGGTATGGTTCAACACCAATGAGTTACGCAAATCTCAGTGATATGCTCGCAGAGCGAGGCATATCGGTTAA
TCGCTCCACTATTTACCGTTGGTTTATTGAATATTCCCCTAAATTACGAAAAAAGTTACGTCGTAATTATCAATTCATCAAAACCGACTCATCCTGGCAA
CTTGATGAAACCTACGTCAAAGTGAAGGGGAAATGGCACTACCTTTACCGTGCTATTAATAAGCAAGGAGAGACACTCGATTTTTATTTTTCCCACAAGC
GCAATAAAGAAGCGGCCTACCAATTCCTTAAGCGTTGCTTAAGATATTACGACATAGACAATCAACCTAAAACGTTAAACACGGACAAACATTCCTCATA
CGCCAATGCTATTGCTAGACTGAAGAAGGAAGGACGACTACGAGAGGATGTCGAGCAGCGGCAAGTTAAATGCCTCAATAATGGCATTGAGTCCGATCAT
GCCCCCATTAAGAAATTGATCGTGGCCGCCGGTGGTTTCAAACTGAGGAAGCGAGCTTGGTCAACCATTCAAGGATTTGAATCTTTACGAATGTTGAATA
AGGGACAATTTGATTTCTGGTTACGTAATGATAAACGTAAAACCGTAGTGCGGGAGAGATCCGCCTTCATAAACCGATTATTCAATGTTGAGGTTATTTT
CGAATAATAATAAGTCTATTGTAGGACTTATTTACTGACTCAGATTAGTTGCAACAGCCCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
741 bp	246 aa	67	807	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTNPDFKWKHFAPEIILWCLRWYGSTPMSYANLSDMLAERGISVNRSTIYRWFIEYSPKLRKKLRRNYQFIKTDSSWQLDETYVKVKGKWHYLYRAINKQ
GETLDFYFSHKRNKEAAYQFLKRCLRYYDIDNQPKTLNTDKHSSYANAIARLKKEGRLREDVEQRQVKCLNNGIESDHAPIKKLIVAAGGFKLRKRAWST
IQGFESLRMLNKGQFDFWLRNDKRKTVVRERSAFINRLFNVEVIFE

Blast result :

Comments

ISVsa4 is 97% aa similar to ISPpr9.

References

1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.