ISTha2

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU327987 ND Thauera sp.
Thauera sp. E7
DNA section
IS Length : 1268 bp

Ends


IR Length : 22/27

IRL : CAGGGCAATCGCACCGACTTCGCATAAGCAAATGCAATAACGCTTTTTGC
IRR : CAGGGCAATCGCACCTTCATGTCATAACCCCAAGCAACTCGGCACGAAAT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCACAAGCGCCGCATGAGCCCCGCCGTTCGC10

DNA sequence

CAGGGCAATCGCACCGACTTCGCATAAGCAAATGCAATAACGCTTTTTGCTTTCATGACCTTGCGAGACTCCTGTTCACATTGTCATAAGTTGTGTAGTT
TCCTACCTTTTTGGGTATCCCATGAAGGCAGGAAACGTCATGCCGCTGACGCAGGTGTTCGTCTCGATTTCCGACCCGCGCAGCGCGCGGCATGCGCGCC
ACGACCTGACCGAGTTGCTGACGGTGGCGGTGTGCGCGGTGCTCTCGGGTGTCGACGACTTCGTCGACATCGAGTTGTGGGCCGAGGCCAAGATCGACTG
GTTGCGAGGCTTCATGAAGCTTGAGCATGGCATCCCGTCTCACGACACGATCGGACGCGTGTTCGGCCTGATCGCGCCCGACGAGTTCGAGTCCGCGTTC
CGGCGCTGGGTGGGCATGGTGGTGCCGGCGCTGGCCGGGGATACGGTCGTGGCGATCGACGGCAAGACGAGCCGGCGCTCGGGCGGCAAGAGCAAGACTG
ACGCCAGTCCGTTGCACCTGGTGAGCGCGTTTGCGGCCGGCATGGGCGTCGTGCTGGGCCAGACGGCGACCGCCGAGAAGTCGAACGAGATCACCGCGAT
TCCCGAACTGCTTGCCAAGTTGGCGATCGAGGGCTGCGTGGTGACGATCGACGCGATGGGCACCCAGACAAAGATCGCCCGCACGATCCGCGAGCGCGGC
GCGCATTACGTGCTGTGTGTGAAGGAGAACCATCCGAACCTGCACGATTCGATCCTGTTTGCCGACATCGATCCGCGAGGGCCGCTGACGCCGAGCTCGA
CCCATGAGACCACGATCAAGGACCACGGTCGCATCGAGATCCGCCGATGCCGCGCCTACGCCGCGATCGATCGCCTCTACAAGTCCGAGGACTGGCAGGA
TCTGGCAAGCTTCGCGGTGGTCGAGCGCATTCGCACCGTGGGCGATCACACCAGCACCGAGCGCGTCTTCTACATCAGCAGCCTGCCCGCCGACGCCGAG
CGCATCGCTCGAGCCGTACGCAGTCACTGGGAGGTGGAGAATCGGCTTCACTGGTGTCTGGACGTGCAGTTCAACGAGGATCAGTCACGCGTTCGCACCG
GCTACGCTGCCAACAATTTCGCCATCGTTCGCCACATCGTGATGAACCTGCTGCGGCTCAACACGACCCGCAAGGTGAGCATCAAGTCCAAGCGCATGCT
GGCGGCGACGATCGACGAATTTCGTGCCGAGTTGCTTGGGGTTATGACATGAAGGTGCGATTGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1131 bp376 aa1221252+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKAGNVMPLTQVFVSISDPRSARHARHDLTELLTVAVCAVLSGVDDFVDIELWAEAKIDWLRGFMKLEHGIPSHDTIGRVFGLIAPDEFESAFRRWVGMV
VPALAGDTVVAIDGKTSRRSGGKSKTDASPLHLVSAFAAGMGVVLGQTATAEKSNEITAIPELLAKLAIEGCVVTIDAMGTQTKIARTIRERGAHYVLCV
KENHPNLHDSILFADIDPRGPLTPSSTHETTIKDHGRIEIRRCRAYAAIDRLYKSEDWQDLASFAVVERIRTVGDHTSTERVFYISSLPADAERIARAVR
SHWEVENRLHWCLDVQFNEDQSRVRTGYAANNFAIVRHIVMNLLRLNTTRKVSIKSKRMLAATIDEFRAELLGVMT

 

Blast result :
Comments
ISTha2 is 81% aa similar to ISAzo8.
References
1] ISfinder annotation
2] Gillings,M., Boucher,Y., Labbate,M., Holmes,A., Krishnan,S., Holley,M. and Stokes,H. (2008) J. Bacteriol. 190 (14), 5095-5100