ISRce1
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011420 | ND | Rhodospirillum centenum | Rhodospirillum centenum SW |
DNA section
IS Length : 1267 bp
Ends
IR Length : 13/19
IRL : CAGGGCACTGAACTCATGTGACAGCGGGTGACAGATTGCGGAACTGCTGA
IRR : CAGGGCTTCGAATCCAAGTTAAGGGATGGCGGGGTTGAGGAGAGAGGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTCAACCGCCCCG | ACCAGCCGCC | CGCGACCGGCCC | 10 |
DNA sequence
CAGGGCACTGAACTCATGTGACAGCGGGTGACAGATTGCGGAACTGCTGATTCTGTGGGCCGGTGTTATCGGACGGCACGGGATCGGCGTCATGGACGAG
GACGATTGGGGTTCGAAGTCGCGGCTTCGGGTGCTTTTGGAGCATTTCAGCCGGATAGAGGACCCGCGGGATGAGCGGCGGATCCTGCATCCGCTGCCGG
AGATCCTGCTTTTGGTGGTGTGCGGCACGATGGCGGACTGCGACGACTACGAGAACATCGCGGCCTGGGGTGCGGCGCACCTGCCGTTCCTGCGTCGGCA
TCTGCCCTACGCGCACGGCGTTCCCGGCGAGCGGTGGCTGACGATCCTGATGAACCGGATCGATCCGGCGCTGTTCTCGGCCGCCTTCACCGCGTGGGTA
CGTGCGACCTTTCCGGGGCGGGCCGACTTCGTCGCCATCGACGGCAAGACCTCGCGGCGCAGCCACGACCGCCGCGCCGGGACCGCGCCGATCCACCTCG
TATCCGCCTTCGCGACGACCTCCCGCCTGGTGCTCGCCCAGGAGGCGGTCCCCGACAAGGCCAACGAGCTTGCGGCGATTCCGGTGCTGCTCGATCGGCT
CGGCGAGAACGGCGGGCTGGCCGGCGCCCTCGTCTCCATCGACGCCATCGCCACCAACCCGACCATCGCCGCCGCGATCCGGGGCCAGGGCGCCGACTAC
CTCCTCGCCGTCAAGGCCAACCAGCCCACGCTGCGCGCGGAGCTCGAGGCGGCGTTCGCCGTCGGCGACGGCGCTGACCACCACCACGACCTCGACAAGG
GGCACGGCCGGGTCGAAGAACGCCACGTGAGCGTGATCCGTGAGGTCGACTGGCTCTCCGGCACGCGCCGGTTTCCTGGGGAGATGCGCCTGCCCGACGT
CGCCGCCATCGTCCGCGTCCACACCACAGCCCACATCGCCGACCGGACGCGGACCGACACCCGCTACTTCATCTCCTCCGCCCCGCTCACCGCCGAACAC
GCCGCCGACGCCGTCCGCGGGCACTGGGGCATCGAGAACAGGCTGCACTGGGTGCTCGACGTCCTCTTCAAGGACGATCTCTCGCGCTTGCGAACCGGCC
ACGGTGCCAAGAACATGGCCGTCGTCCGCCACTTCGCCCTCAACCTCATCCGCGCAGCCAACGACCAAAAGTCGCTCAAGACGCGCCGAAAAATGGCCGG
ATGGTCGGACGACTACCTCGCCTCTCTCCTCAACCCCGCCATCCCTTAACTTGGATTCGAAGCCCTG
GACGATTGGGGTTCGAAGTCGCGGCTTCGGGTGCTTTTGGAGCATTTCAGCCGGATAGAGGACCCGCGGGATGAGCGGCGGATCCTGCATCCGCTGCCGG
AGATCCTGCTTTTGGTGGTGTGCGGCACGATGGCGGACTGCGACGACTACGAGAACATCGCGGCCTGGGGTGCGGCGCACCTGCCGTTCCTGCGTCGGCA
TCTGCCCTACGCGCACGGCGTTCCCGGCGAGCGGTGGCTGACGATCCTGATGAACCGGATCGATCCGGCGCTGTTCTCGGCCGCCTTCACCGCGTGGGTA
CGTGCGACCTTTCCGGGGCGGGCCGACTTCGTCGCCATCGACGGCAAGACCTCGCGGCGCAGCCACGACCGCCGCGCCGGGACCGCGCCGATCCACCTCG
TATCCGCCTTCGCGACGACCTCCCGCCTGGTGCTCGCCCAGGAGGCGGTCCCCGACAAGGCCAACGAGCTTGCGGCGATTCCGGTGCTGCTCGATCGGCT
CGGCGAGAACGGCGGGCTGGCCGGCGCCCTCGTCTCCATCGACGCCATCGCCACCAACCCGACCATCGCCGCCGCGATCCGGGGCCAGGGCGCCGACTAC
CTCCTCGCCGTCAAGGCCAACCAGCCCACGCTGCGCGCGGAGCTCGAGGCGGCGTTCGCCGTCGGCGACGGCGCTGACCACCACCACGACCTCGACAAGG
GGCACGGCCGGGTCGAAGAACGCCACGTGAGCGTGATCCGTGAGGTCGACTGGCTCTCCGGCACGCGCCGGTTTCCTGGGGAGATGCGCCTGCCCGACGT
CGCCGCCATCGTCCGCGTCCACACCACAGCCCACATCGCCGACCGGACGCGGACCGACACCCGCTACTTCATCTCCTCCGCCCCGCTCACCGCCGAACAC
GCCGCCGACGCCGTCCGCGGGCACTGGGGCATCGAGAACAGGCTGCACTGGGTGCTCGACGTCCTCTTCAAGGACGATCTCTCGCGCTTGCGAACCGGCC
ACGGTGCCAAGAACATGGCCGTCGTCCGCCACTTCGCCCTCAACCTCATCCGCGCAGCCAACGACCAAAAGTCGCTCAAGACGCGCCGAAAAATGGCCGG
ATGGTCGGACGACTACCTCGCCTCTCTCCTCAACCCCGCCATCCCTTAACTTGGATTCGAAGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1158 bp | 385 aa | 92 | 1249 | + | No |
Chemistry : Unknow
ORF sequence :
MDEDDWGSKSRLRVLLEHFSRIEDPRDERRILHPLPEILLLVVCGTMADCDDYENIAAWGAAHLPFLRRHLPYAHGVPGERWLTILMNRIDPALFSAAFT
AWVRATFPGRADFVAIDGKTSRRSHDRRAGTAPIHLVSAFATTSRLVLAQEAVPDKANELAAIPVLLDRLGENGGLAGALVSIDAIATNPTIAAAIRGQG
ADYLLAVKANQPTLRAELEAAFAVGDGADHHHDLDKGHGRVEERHVSVIREVDWLSGTRRFPGEMRLPDVAAIVRVHTTAHIADRTRTDTRYFISSAPLT
AEHAADAVRGHWGIENRLHWVLDVLFKDDLSRLRTGHGAKNMAVVRHFALNLIRAANDQKSLKTRRKMAGWSDDYLASLLNPAIP
AWVRATFPGRADFVAIDGKTSRRSHDRRAGTAPIHLVSAFATTSRLVLAQEAVPDKANELAAIPVLLDRLGENGGLAGALVSIDAIATNPTIAAAIRGQG
ADYLLAVKANQPTLRAELEAAFAVGDGADHHHDLDKGHGRVEERHVSVIREVDWLSGTRRFPGEMRLPDVAAIVRVHTTAHIADRTRTDTRYFISSAPLT
AEHAADAVRGHWGIENRLHWVLDVLFKDDLSRLRTGHGAKNMAVVRHFALNLIRAANDQKSLKTRRKMAGWSDDYLASLLNPAIP
Blast result :
Comments
ISRce1 is 66% aa similar to ISAli14.
References
1] ISfinder annotation (2009)
2] Touchman,J.W., Bauer,C. and Blankenship,R.E. ( 2007) Direct submission GenBank.
2] Touchman,J.W., Bauer,C. and Blankenship,R.E. ( 2007) Direct submission GenBank.