ISRce1

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011420 ND Rhodospirillum centenum
Rhodospirillum centenum SW
DNA section
IS Length : 1267 bp

Ends


IR Length : 13/19

IRL : CAGGGCACTGAACTCATGTGACAGCGGGTGACAGATTGCGGAACTGCTGA
IRR : CAGGGCTTCGAATCCAAGTTAAGGGATGGCGGGGTTGAGGAGAGAGGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTCAACCGCCCCGACCAGCCGCCCGCGACCGGCCC10

DNA sequence

CAGGGCACTGAACTCATGTGACAGCGGGTGACAGATTGCGGAACTGCTGATTCTGTGGGCCGGTGTTATCGGACGGCACGGGATCGGCGTCATGGACGAG
GACGATTGGGGTTCGAAGTCGCGGCTTCGGGTGCTTTTGGAGCATTTCAGCCGGATAGAGGACCCGCGGGATGAGCGGCGGATCCTGCATCCGCTGCCGG
AGATCCTGCTTTTGGTGGTGTGCGGCACGATGGCGGACTGCGACGACTACGAGAACATCGCGGCCTGGGGTGCGGCGCACCTGCCGTTCCTGCGTCGGCA
TCTGCCCTACGCGCACGGCGTTCCCGGCGAGCGGTGGCTGACGATCCTGATGAACCGGATCGATCCGGCGCTGTTCTCGGCCGCCTTCACCGCGTGGGTA
CGTGCGACCTTTCCGGGGCGGGCCGACTTCGTCGCCATCGACGGCAAGACCTCGCGGCGCAGCCACGACCGCCGCGCCGGGACCGCGCCGATCCACCTCG
TATCCGCCTTCGCGACGACCTCCCGCCTGGTGCTCGCCCAGGAGGCGGTCCCCGACAAGGCCAACGAGCTTGCGGCGATTCCGGTGCTGCTCGATCGGCT
CGGCGAGAACGGCGGGCTGGCCGGCGCCCTCGTCTCCATCGACGCCATCGCCACCAACCCGACCATCGCCGCCGCGATCCGGGGCCAGGGCGCCGACTAC
CTCCTCGCCGTCAAGGCCAACCAGCCCACGCTGCGCGCGGAGCTCGAGGCGGCGTTCGCCGTCGGCGACGGCGCTGACCACCACCACGACCTCGACAAGG
GGCACGGCCGGGTCGAAGAACGCCACGTGAGCGTGATCCGTGAGGTCGACTGGCTCTCCGGCACGCGCCGGTTTCCTGGGGAGATGCGCCTGCCCGACGT
CGCCGCCATCGTCCGCGTCCACACCACAGCCCACATCGCCGACCGGACGCGGACCGACACCCGCTACTTCATCTCCTCCGCCCCGCTCACCGCCGAACAC
GCCGCCGACGCCGTCCGCGGGCACTGGGGCATCGAGAACAGGCTGCACTGGGTGCTCGACGTCCTCTTCAAGGACGATCTCTCGCGCTTGCGAACCGGCC
ACGGTGCCAAGAACATGGCCGTCGTCCGCCACTTCGCCCTCAACCTCATCCGCGCAGCCAACGACCAAAAGTCGCTCAAGACGCGCCGAAAAATGGCCGG
ATGGTCGGACGACTACCTCGCCTCTCTCCTCAACCCCGCCATCCCTTAACTTGGATTCGAAGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1158 bp385 aa921249+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDEDDWGSKSRLRVLLEHFSRIEDPRDERRILHPLPEILLLVVCGTMADCDDYENIAAWGAAHLPFLRRHLPYAHGVPGERWLTILMNRIDPALFSAAFT
AWVRATFPGRADFVAIDGKTSRRSHDRRAGTAPIHLVSAFATTSRLVLAQEAVPDKANELAAIPVLLDRLGENGGLAGALVSIDAIATNPTIAAAIRGQG
ADYLLAVKANQPTLRAELEAAFAVGDGADHHHDLDKGHGRVEERHVSVIREVDWLSGTRRFPGEMRLPDVAAIVRVHTTAHIADRTRTDTRYFISSAPLT
AEHAADAVRGHWGIENRLHWVLDVLFKDDLSRLRTGHGAKNMAVVRHFALNLIRAANDQKSLKTRRKMAGWSDDYLASLLNPAIP

 

Blast result :
Comments
ISRce1 is 66% aa similar to ISAli14.
References
1] ISfinder annotation (2009)
2] Touchman,J.W., Bauer,C. and Blankenship,R.E. ( 2007) Direct submission GenBank.