ISAch1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Achromobacter sp.
Achromobacter sp. BP3
DNA section
IS Length : 1192 bp

Ends


IR Length : 13/18

IRL : GGAAACTCTGAAGAAGACTTCCTGATTTGGCAAAATGCCCAGACTCTCCA
IRR : GGATGGTCTGAAGTAGTCACGTATTTCTGGCTGACTTCAGCCCTGCCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCGGTGATCGGACCCATTAATCTGTGCTTCATT4

DNA sequence

GGAAACTCTGAAGAAGACTTCCTGATTTGGCAAAATGCCCAGACTCTCCACCCGCCCGAGTTTCCGATGAAGCAGATGACCTTCGCCGACGCCGAGTACG
CCGGTAATCGCAAGCAGACCCGCAAGGAATTGTTCCTGATCGAGATGGATCGGGTTGTGCCATGGAAGGGTTTGATTGCCTTGATCGAGCCGTATTACCC
CAAGGGCGAAGGCGGCCGACCCGCCTATCCGCTGATGGCGATGCTGCGCGTGTATCTGATGCAAAACTGGTTCGGCTACAGCGATCCGGCGATGGAGGAA
GCGCTGTACGAGACCACCATCCTGCGTCAGTTCGCCGGGTTGAGACTGGAGCGCATTCCGGACGAGACCACCATCCTCAATTTCCGCCGGCTGCTGGAGA
AGCGTGAGTTGGCGGCCGGTATCCTTGGCGTGATCAATGGCTACCTGGGAGATCGCGGCCTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACGCTGAT
CAATGCGCCGAGTTCGACCAAGAACAAGGACGGCAAACGCGACCCGGAGATGCACCAGACCAAGAAGGGTAACCAATATTACTTCGGCATGAAGGCCCAC
ATCGGAGTGGATGATGAGTCGGGTCTGGTACACAGCGTAGTCGGTACGCCAGCCAACGTGGCGGATGTCACTCAGGTCGACAAGTTACTGCACGGCGACG
AAAACGTCGTTTGCGCCGATGCCGGCTACACGGGCGTCGAAAAGCGCTCCGAACATGAAGGCCGGGCGGTGATCTGGCAGGTCGCGGCACGCCGCAGCAC
TTACAAGAAGCTTGGCAAGAGCAGCCCGCTCTACAAAGCCAAGCGCAAGGTCGAGAAGGCCAAGGCGCAGGTGCGGGCGAAGGTCGAGCACCCGTTTCGG
GTGATCAAGCGCCAGTTTGGTTACACCAAAGTTCGCTTTCGAGGGCTGGTGAAGAACACGGCGCAGTTAGTGACGCTGTTCGCCCTGTCGAACCTGTGGA
TGGCGCGCCGACATTTACTGGCGAATACAGGAGAGGTGCGCCTGTAATGTGGGAAATGGTCGGCGCGAGGTGCTCGCGGCGGCTAAAAATCCAGAAAAAA
TGGATGATTCGATCGTTCTTTAGACGAATCGCCGCTTTTAAAATTGGCAGGGCTGAAGTCAGCCAGAAATACGTGACTACTTCAGACCATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa671047+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGNRKQTRKELFLIEMDRVVPWKGLIALIEPYYPKGEGGRPAYPLMAMLRVYLMQNWFGYSDPAMEEALYETTILRQFAGLRLERIPDE
TTILNFRRLLEKRELAAGILGVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGVDDESGLVHSVVGTPANVAD
VTQVDKLLHGDENVVCADAGYTGVEKRSEHEGRAVIWQVAARRSTYKKLGKSSPLYKAKRKVEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLVKNTAQ
LVTLFALSNLWMARRHLLANTGEVRL

 

Blast result :
Comments
ISAch1 is 96% aa similar to ISPst7.
References
1] ISfinder annotation (2009)
2] Dong,X., Hong,Q. and Li,S. Direct submission GenBank (2008)