ISAcma22

  • Family IS701
  • Group ISAba11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009925 ND Acaryochloris marina
Acaryochloris marina MBIC11017
DNA section
IS Length : 1136 bp

Ends


IR Length : 20/22

IRL : TAGAAGTTACGCATTGACAGAATAACAACGCTGTAGTGTATTAAGCAGCC
IRR : TAGGAGTTACGCATTGATAGAAGTGCATTGATCCATTTCGGCAAAAGTAG

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTCGTATCTACGGTACAGAACAC5

DNA sequence

TAGAAGTTACGCATTGACAGAATAACAACGCTGTAGTGTATTAAGCAGCCCTTGCTTCGACCCAGTATTCAAACCTCATGCGTCAGATATCTAAACCTTC
CACAGCAAAGTGTAATAGCACTCTCTACACCCTATTCCTGCTGGCGGAGCCTCGATATGTCAGCTGTATGCGGTTATCAGAGATTCTGTCAGAGTTGAGT
CACGATAGCGTGAATCGATTTCTATTACGCGAGAACTACACCCCCAAAGATTTATTGGATGAGGTCAAAGCCCATATTGGTTGGACAGTAGGCATCCTCA
GCGTTGACGACAGTGTGGAAGACAAACCCTATCGGGACCTGAGCAAAAGTGCCTTTGTCGATTACTTCTGGTCAGGCAAGCACAAGCGGAGTGTCAAAGG
ACTCAATTTAATCACGTTGTACTACACCGATACAGCGGGTCATTCTTATCCCATCAACTTTCGCATTTACGACAAACAGGAGGGCAAAACCAAAAACGAT
TACTTCCGGGAGATGGTGCTTGAGGTCAAACAATGGGGCATTACACCGGCTTGGGTGACAGGTGATAGTTGGTATTCAAGCCTGGAAAACCTGAAGTTTC
TCAGAAACGAGAAAGTGGGTTTTCTCTTTGGCATCGCCAGCAATCGTCAGGTCTCTGTAGAGCGAGGCTCCTTAGTACAGGTTAAACAGCTAGATATACC
TGATACAGGGAGGATGGTTTATCTCAAAGCCTTTGGTTGGGTGAAGGTATTTTGTCAGCCGTTCAAAGACGAACTGCGACACTACATCTTGTACCAACCC
GAATTAGAACGATTGCAACATCTCACTCGCAAGATCTTCAAAGCGGTGCATGATGACCACTGGAAAATTGAATGCTTCCATAGAGTCATTAAACAAGTAT
GCAATATCGAACGATTCTATGTCCGAGATGAGCAAGCCATTCGTAATCATTGCTTTTGTGCGCTCAGAGCGTTCTGTCGCCTGCAAACGATGTGCATCCA
AGGATTGCTCAACAACTGTTATCAAATATCAAGACAATTGTTTGTACCCGTGATTCGCCAGTTTATTTTGGACAATCTGACGATATCTACTTTTGCCGAA
ATGGATCAATGCACTTCTATCAATGCGTAACTCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1053 bp350 aa781130+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRQISKPSTAKCNSTLYTLFLLAEPRYVSCMRLSEILSELSHDSVNRFLLRENYTPKDLLDEVKAHIGWTVGILSVDDSVEDKPYRDLSKSAFVDYFWSG
KHKRSVKGLNLITLYYTDTAGHSYPINFRIYDKQEGKTKNDYFREMVLEVKQWGITPAWVTGDSWYSSLENLKFLRNEKVGFLFGIASNRQVSVERGSLV
QVKQLDIPDTGRMVYLKAFGWVKVFCQPFKDELRHYILYQPELERLQHLTRKIFKAVHDDHWKIECFHRVIKQVCNIERFYVRDEQAIRNHCFCALRAFC
RLQTMCIQGLLNNCYQISRQLFVPVIRQFILDNLTISTFAEMDQCTSINA

 

Blast result :
Comments
ISAcma22 is 56% aa similar to ISMhu9.
There is a MITE inserted inside this IS, in order to reconstruct this IS we have deleted this MITE.
File updated: September 07 2011.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)