ISfinder Mirror Site

ISAcma21

Family IS1380
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_009925	ND	Acaryochloris marina	Acaryochloris marina MBIC11017

DNA section

IS Length : 1474 bp

Ends

IR Length : 14/15

IRL : CCTGGATTATTCACGAGGTATTTGAGTGCCATAGAGAAAAGAGCTTGAAC
IRR : CCTGGATTATTCATGCCCCTATGGGATGCGAGTCTAAAGTGAGTGGCATT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GAAACAATTTGGCAATGATGC	CTAA	AAATGGCCTCAATTCTCTTGA	4

DNA sequence

CCTGGATTATTCACGAGGTATTTGAGTGCCATAGAGAAAAGAGCTTGAACCATAGTAGACTCAAGCTCTCCAAGAAATTTGTAGCTTTATTGTGCCATGA
CACCGTGTGACAGTGATGTAACCCTCGACTTTTATCAAGACCATCCGTTATGTGTTCAATTTTCAGACCTTGACTTGAGTTCAGATGTTGGCATTCTACT
CGCTGCTCAAGCCGAGTCACGAATCCACATTTGCCAAGATATCGCAGACTGTATTGAAGAATGGCGAGATCCTGACAAACTCACCCATTCCCTACCTCAG
TTAGTGGCTCAACGGGTATACCAACTCATCGGAGGCTACGAGGATGCCAATGATAGCGATAGTTTACGGCATGACCCCATCTTCAAAATCGCCTGCGAGT
ACTTGCCTATTCCAGAGTCCAACGTATTGGCGAGTCAACTGACTATCAGTCGTCTAGAGAATCAGGTCACAACTGACCAGACTGCAGCAATGCGTCGTCA
ATTTATTGACCGGTTCATTGCCAGCTATCCTCACCCGCCATCGACTATCGTTTTAGACATTGATGGTTGGGATGACCCGACTCATGGTGACCAGGAAGGG
AGTGCGTTTCATGGCTACTATGGTCAGCATATGTATTTCCCCGTGTTAATCAATGAAGCTCAGAGTGGGTTTCCCTTGGTATGCCAACTGCGTCGAGGCA
ACTCTCATCCTGGTAAAGCAGTGGCCGGGATTCTGCGTTGGCTGTTTTGGCGTCTCAAACGAGCCTGGCCTGGTGTGACCATTGTTCTACGGGCTGATGC
TGGATTCTCACTGCCTGAAATTCTGAGGGTCTGTGAGCGTTCTGGCATTCACTATGCCATTGGCTTTAGCTCGAATGCTGTGCTGAAGCGGAAAATCTCT
AATGTACTAGAGCAGGCCCGACTCCAGTATTGTCGAACCCAACAAAAGGCTCGATTGTTTGATGATGTCTACTACGCAGCTGCCACCTGGGACTATCCTC
GACGTCTGGTGATGAAGGCTGAATATCTTCCCAAAGGGGCCAATCCTCGGTTTGTCCTGACCGATATGATGCTCAGTCCACAGCAGCTCTACGATACGTT
TTATGTTCAGCGTGGTGGGGATAGTGAGCATCCCATTAAAGAACTCAAACGAGGCATTCAAGCAGACCGACTCAGTTGTCACCGGTTTACGGCGAATCAA
TTTCGTCTGCTGTTAGCGCAGGCAGCGTATTTGCTAATGATTACGTTACGATAGGCTGCCCAGGGAACGGAGTTAGCGACGGCTCAAGTGGAACGCCTAC
GATGTGCCCTGATTAAAGGGGCTGCTCGGGTCAGAGTGTCTGTTCGACGGGTCCTTGTAGAGCTTGCAACATTTTGTCCCTTTGAAAAAGAGATTCGCTT
AATTGCTCAACGTTTATGTGACCCAATGCCACTCACTTTAGACTCGCATCCCATAGGGGCATGAATAATCCAGG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1158 bp	385 aa	97	1254	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPCDSDVTLDFYQDHPLCVQFSDLDLSSDVGILLAAQAESRIHICQDIADCIEEWRDPDKLTHSLPQLVAQRVYQLIGGYEDANDSDSLRHDPIFKIAC
EYLPIPESNVLASQLTISRLENQVTTDQTAAMRRQFIDRFIASYPHPPSTIVLDIDGWDDPTHGDQEGSAFHGYYGQHMYFPVLINEAQSGFPLVCQLRR
GNSHPGKAVAGILRWLFWRLKRAWPGVTIVLRADAGFSLPEILRVCERSGIHYAIGFSSNAVLKRKISNVLEQARLQYCRTQQKARLFDDVYYAAATWDY
PRRLVMKAEYLPKGANPRFVLTDMMLSPQQLYDTFYVQRGGDSEHPIKELKRGIQADRLSCHRFTANQFRLLLAQAAYLLMITLR

Blast result :

Comments

ISAcma21 is 55% aa similar to ISSp1 .

References

1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)