ISAcma23
- Family ISL3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009925 | ND | Acaryochloris marina | Acaryochloris marina MBIC11017 Acaryochloris marina plasmid pREB2 |
DNA section
IS Length : 1810 bp
Ends
IR Length : 22/25
IRL : GGCTCTTGTCCTCTTTTGGTGATGCCAACTATGCGGTAGAGGATAGAGGA
IRR : GGATCTAGTCCACTTTTGGTGATGCTTGAGAAAATGCACGCAAAGCTATA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAGTGGACTAGATCCTAACCTCG | GAACATTGGCAGCAAATGGCA | 0 | |
| TCACCAATTTGACTGATTTTTA | TAACCTCG | GCATGTAAGTGACCATTTGC | 8 |
| TAACCTCATGCGTATTTGCATAGCTT | CG | AGGTTACGAGAATACGCAGTTC | 2 |
| AATTTCACGAGTGCAAGAACATTG | TAACCTCGGGCTCTTGTCCTC | 0 |
DNA sequence
GGCTCTTGTCCTCTTTTGGTGATGCCAACTATGCGGTAGAGGATAGAGGAGTAAACCCTTGCCAGGTCTGGTTATGGAACTCTTCCAACAATTCCTTCCG
TGCCAAGACACCCTTCACTTGGACAGTTGGGATCTTGACTCCACAAACCATCAGATGACCTTCCATGTTTCTTCAACTCAAGCTTTGGCTTGTTGCCCAG
TCTGCCATCAAACATCACACCGGGTTCACAGTCGCTATGAGCGGACCTTGAGAGATCTTCCCTGTGTGGAATTCTGTCTGACTATTCTGCTTCAAGTTTG
CAAGTTCTTCTGTTCCAATAAAACTTGTAAGCGTCGCATTTTTACTGAGCGACTACCCCAGGTCGCGGTTCCTTGGGCTCGGAGGACAGTTCGCTTTGCA
GAACACCTTAGTTCGATTGGCTTGGCCCTTGGTGGTGCAGCTGCAGCCCGGCTGAGTTATCAAATCAATTATGGAAGTAGTCGCAATACTATGTTGAGAG
CCCTCTTCAAGCTTCCACTTCCCTCAGTGACAACGCCCAAAATATTAGGGGTGGATGATTTTGCACTTCGCAGAGGCCATGAATATGGCACCATTCTTGT
GGACCTTGAAAAGCATCAACCTATTGTCTTGTTAACAGATCGCAAAGCAGACACGTTAGCAGATTGGTTGAACGAGCACCCTGGTGTCGAAGTCATTTCT
CGTGATCGCTCCAAGGCATATAAATCAGGAGCAAGTGAAGGGGCACCTGATGCATTGCAGGTTGCAGACCGCTTTCATCTACTCCAGAACCTTGAAGAAA
TTCTAGAAAACGTGTTTAGCTCTCATTCCCAAGTAATCAAGACAGTCGAGTACACCCTGCTGAAAGCTACACTTGCTGAGCATCAAGACACAGAAGCAAT
GAGCCAGCCTGTGGTGAAACCTCAAGTTGATCCTAATTCTCGTAAGGCTCAAAATCGGGCTCGAAGATTGGAAAAATACGAGCAGACTCATGCTTTACGC
AAGCAAGGTTACCTGATCAAAGATATTGCTCATCATCTGGGGATTGGCAAACGCACTGTGTATACCTACCTAGCTGCTGATACATTTCAAGAGTATAAAA
CCCATCCCCGACGAGGATGGAGTGGTCTTAACCCTTACAAAGCCTACCTGCTTGAACAATGGAATAAAGGTCGTCAGAATTCCAAACAATTATTAGCAGA
GATTCAGCAGCAGGGCTTCAAGGGCAGTTATACGATGGTCGTTCGCTACACTCACAAATTGCGTCAGTCTCTACCCCCGCAGCCTCCACGAGATTCCCTC
AATGAGCTACCAGGAAGAGGACCTGTTCCTGAGGCTCAAGAGCTCATCCAAAAGCCTTTGACAGTTCAGAGGGCGGCTTGGTTGGTGATGCGCAAGGTGG
AAAATCTAACGGAAGAGGATGAGACAATTTTGGAACAGCTGAGTAGTCAACCTGAACTCTCAAAAGCCATTGATCTGGCTCAAAGCTTGCTCTTCATCGT
CAGGAAGAGATTACCTCAACATCTAGACCCGTGGTTGGACAGAGCTAAAAATAGTGCACTGAAACCTTTTCAGAGTTTTGCGAAAGGGCTCCTAGACGAC
TACGAAGCGGTCAAAGCTGCCCTAACACTGGAAGTGAGTAATGGCCAGGTTGAAGGACAAAATAATCGATTGAAAATGGTGAAGCGCCAAATGTATGGGA
GGGCTGGTCTCGACCTTTTGAATAAACGCTTGGTGCTTATGAGCTGAAGTAGTTGCTGCTTATAGCTTTGCGTGCATTTTCTCAAGCATCACCAAAAGTG
GACTAGATCC
TGCCAAGACACCCTTCACTTGGACAGTTGGGATCTTGACTCCACAAACCATCAGATGACCTTCCATGTTTCTTCAACTCAAGCTTTGGCTTGTTGCCCAG
TCTGCCATCAAACATCACACCGGGTTCACAGTCGCTATGAGCGGACCTTGAGAGATCTTCCCTGTGTGGAATTCTGTCTGACTATTCTGCTTCAAGTTTG
CAAGTTCTTCTGTTCCAATAAAACTTGTAAGCGTCGCATTTTTACTGAGCGACTACCCCAGGTCGCGGTTCCTTGGGCTCGGAGGACAGTTCGCTTTGCA
GAACACCTTAGTTCGATTGGCTTGGCCCTTGGTGGTGCAGCTGCAGCCCGGCTGAGTTATCAAATCAATTATGGAAGTAGTCGCAATACTATGTTGAGAG
CCCTCTTCAAGCTTCCACTTCCCTCAGTGACAACGCCCAAAATATTAGGGGTGGATGATTTTGCACTTCGCAGAGGCCATGAATATGGCACCATTCTTGT
GGACCTTGAAAAGCATCAACCTATTGTCTTGTTAACAGATCGCAAAGCAGACACGTTAGCAGATTGGTTGAACGAGCACCCTGGTGTCGAAGTCATTTCT
CGTGATCGCTCCAAGGCATATAAATCAGGAGCAAGTGAAGGGGCACCTGATGCATTGCAGGTTGCAGACCGCTTTCATCTACTCCAGAACCTTGAAGAAA
TTCTAGAAAACGTGTTTAGCTCTCATTCCCAAGTAATCAAGACAGTCGAGTACACCCTGCTGAAAGCTACACTTGCTGAGCATCAAGACACAGAAGCAAT
GAGCCAGCCTGTGGTGAAACCTCAAGTTGATCCTAATTCTCGTAAGGCTCAAAATCGGGCTCGAAGATTGGAAAAATACGAGCAGACTCATGCTTTACGC
AAGCAAGGTTACCTGATCAAAGATATTGCTCATCATCTGGGGATTGGCAAACGCACTGTGTATACCTACCTAGCTGCTGATACATTTCAAGAGTATAAAA
CCCATCCCCGACGAGGATGGAGTGGTCTTAACCCTTACAAAGCCTACCTGCTTGAACAATGGAATAAAGGTCGTCAGAATTCCAAACAATTATTAGCAGA
GATTCAGCAGCAGGGCTTCAAGGGCAGTTATACGATGGTCGTTCGCTACACTCACAAATTGCGTCAGTCTCTACCCCCGCAGCCTCCACGAGATTCCCTC
AATGAGCTACCAGGAAGAGGACCTGTTCCTGAGGCTCAAGAGCTCATCCAAAAGCCTTTGACAGTTCAGAGGGCGGCTTGGTTGGTGATGCGCAAGGTGG
AAAATCTAACGGAAGAGGATGAGACAATTTTGGAACAGCTGAGTAGTCAACCTGAACTCTCAAAAGCCATTGATCTGGCTCAAAGCTTGCTCTTCATCGT
CAGGAAGAGATTACCTCAACATCTAGACCCGTGGTTGGACAGAGCTAAAAATAGTGCACTGAAACCTTTTCAGAGTTTTGCGAAAGGGCTCCTAGACGAC
TACGAAGCGGTCAAAGCTGCCCTAACACTGGAAGTGAGTAATGGCCAGGTTGAAGGACAAAATAATCGATTGAAAATGGTGAAGCGCCAAATGTATGGGA
GGGCTGGTCTCGACCTTTTGAATAAACGCTTGGTGCTTATGAGCTGAAGTAGTTGCTGCTTATAGCTTTGCGTGCATTTTCTCAAGCATCACCAAAAGTG
GACTAGATCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1674 bp | 557 aa | 74 | 1747 | + | No |
Chemistry : Unknow
ORF sequence :
MELFQQFLPCQDTLHLDSWDLDSTNHQMTFHVSSTQALACCPVCHQTSHRVHSRYERTLRDLPCVEFCLTILLQVCKFFCSNKTCKRRIFTERLPQVAVP
WARRTVRFAEHLSSIGLALGGAAAARLSYQINYGSSRNTMLRALFKLPLPSVTTPKILGVDDFALRRGHEYGTILVDLEKHQPIVLLTDRKADTLADWLN
EHPGVEVISRDRSKAYKSGASEGAPDALQVADRFHLLQNLEEILENVFSSHSQVIKTVEYTLLKATLAEHQDTEAMSQPVVKPQVDPNSRKAQNRARRLE
KYEQTHALRKQGYLIKDIAHHLGIGKRTVYTYLAADTFQEYKTHPRRGWSGLNPYKAYLLEQWNKGRQNSKQLLAEIQQQGFKGSYTMVVRYTHKLRQSL
PPQPPRDSLNELPGRGPVPEAQELIQKPLTVQRAAWLVMRKVENLTEEDETILEQLSSQPELSKAIDLAQSLLFIVRKRLPQHLDPWLDRAKNSALKPFQ
SFAKGLLDDYEAVKAALTLEVSNGQVEGQNNRLKMVKRQMYGRAGLDLLNKRLVLMS
WARRTVRFAEHLSSIGLALGGAAAARLSYQINYGSSRNTMLRALFKLPLPSVTTPKILGVDDFALRRGHEYGTILVDLEKHQPIVLLTDRKADTLADWLN
EHPGVEVISRDRSKAYKSGASEGAPDALQVADRFHLLQNLEEILENVFSSHSQVIKTVEYTLLKATLAEHQDTEAMSQPVVKPQVDPNSRKAQNRARRLE
KYEQTHALRKQGYLIKDIAHHLGIGKRTVYTYLAADTFQEYKTHPRRGWSGLNPYKAYLLEQWNKGRQNSKQLLAEIQQQGFKGSYTMVVRYTHKLRQSL
PPQPPRDSLNELPGRGPVPEAQELIQKPLTVQRAAWLVMRKVENLTEEDETILEQLSSQPELSKAIDLAQSLLFIVRKRLPQHLDPWLDRAKNSALKPFQ
SFAKGLLDDYEAVKAALTLEVSNGQVEGQNNRLKMVKRQMYGRAGLDLLNKRLVLMS
Blast result :
Comments
ISAcma23 is 56% aa similar to ISAli8.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)
2] ISfinder annotation (2009)