ISAcma19

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009925 ND Acaryochloris marina
Acaryochloris marina MBIC11017
DNA section
IS Length : 1316 bp

Ends


IR Length : 15/17

IRL : CTTTGGAGATGACAACGCGCTTCAACTCTAGAGTCAGCAGTAGATAGGGC
IRR : CTTTGGGGATGACAAGGATTTTACAACGTAGTCTGAATCAGTGATAGCGC

Insertion site


Left flankDirect repeatRight flankDR Length
AACCGATGTCAGCGTTCTCAACCTTCTGATACCAGAGAATCGTGAAGGACT9

DNA sequence

CTTTGGAGATGACAACGCGCTTCAACTCTAGAGTCAGCAGTAGATAGGGCAGTGTGATTTCAAAGAAAATAGGGTGGCCAAAACGACTACCCTATCCAAA
ATATGTTGCCAACATGCTACCAAAAAGTTCTACGTGCTCACCTGAGCGAAAGCCAATATTTGACCTTGCAATTGTTGATACTGCTATTGCAAAGTCATCG
TCAAATTCAACTGGCTCGTCTAGCCAGCATGTTTCCTCAACCGATTCATTACAGCAGTCGCATCCGCAACTTGCAGCGGTTCTTAGTCCTACCCCAGTTG
AGTGTACGTCTGTTATGGTTTCCCATTCTTAAGCACTGGCTTTCAGAAGAATTCAAGACAGGCCATGGCAATCGAGCCTATCGCCGAGCCCGCCTCAAAC
GCACCATTGATGGCTATGTGGTGATGGCCGTTGACCGCACCCAATGGAAGGGACGTAATCTGATGATGGTGACAGTGGTGTGGGGTAAACATGCCTTGCC
CGTGTATTGGGCACCATTGCCCAAATCAGGCAGTAGTAGTCTCAAACAGCAACTCCGTTTGTTGAAAACGGCTCTAAAAATCTTCAAACCTTATCCAGTT
GTGGTACTAGCAGACCGAGATTTCCACAGTCCTAAACTGGCTCTGTGGCTGAGCCAACGACAGGTTGAGTTTGTGCTCAGGCAAAAGAAGAGTGCTTATG
TCCAGCTCCAAGGTGAAGTAGACTATCAACCCCTCAAAGAGAGAGGATTTGCCCCAGGCCAGAAAGGTTTCCTTTGCGATGTCTATTGGGGAAAGCGAGA
CCAGTTAGGGCCGTTTAACCTCGCGTTTTACTGGAAGCGACAGTATCGGGGCAAGGGGGGAAAAGATCCTTGGTTTATCATGACAAGTCTGCCAACCCTG
GAGCAGGCTCTCTCGCTTTACGCTTGCCGATGGGGAATAGAGATGATGTTCAAAGACTGTAAGAGTGGGGGATACAATCTCGAACGAACGAAAGTCAATG
ATGCTCGTTTTCTAGCTTTGGTACTGGTGATGGCGATGGCCTATTGTTTGGCAACGCTTGCTGGCTATGGATTGAAAAAATTGAAAGTCAACCACTATGT
TGCTCGGCTCAATGAGCACTCTCGACGGCGGCCTCGACACAGTGATTTTGGCACGGCGTTGTATGGACACTTATGGTGTTGTGGCATGGAGGTCTGGACT
TTATTAGCCACTGAATTAATGCAACTGAAACCCCATAAACGACTCAATTATCAGAGAGGCATGAGGGCGCTATCACTGATTCAGACTACGTTGTAAAATC
CTTGTCATCCCCAAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa1031269+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLPTCYQKVLRAHLSESQYLTLQLLILLLQSHRQIQLARLASMFPQPIHYSSRIRNLQRFLVLPQLSVRLLWFPILKHWLSEEFKTGHGNRAYRRARLKR
TIDGYVVMAVDRTQWKGRNLMMVTVVWGKHALPVYWAPLPKSGSSSLKQQLRLLKTALKIFKPYPVVVLADRDFHSPKLALWLSQRQVEFVLRQKKSAYV
QLQGEVDYQPLKERGFAPGQKGFLCDVYWGKRDQLGPFNLAFYWKRQYRGKGGKDPWFIMTSLPTLEQALSLYACRWGIEMMFKDCKSGGYNLERTKVND
ARFLALVLVMAMAYCLATLAGYGLKKLKVNHYVARLNEHSRRRPRHSDFGTALYGHLWCCGMEVWTLLATELMQLKPHKRLNYQRGMRALSLIQTTL

 

Blast result :
Comments
ISAcma19 is 73% aa similar to IS8402.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)