ISAcma24
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009925 | ND | Acaryochloris marina | Acaryochloris marina MBIC11017 Acaryochloris marina plasmid pREB3 |
DNA section
IS Length : 1428 bp
Ends
IR Length : 25/26
IRL : AGTTATCGCTCTTTCATCACTCTAGGAGGAGGATAATGAGTTCAACGCCG
IRR : AGTTATCGCTCTTTCATCACTCTAGGCAGATAAAAACGGCGTTTTCACCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTTAATTTCTGGTGTAATTATCTGGC | ATCATCTGACAAGCGCTGTATCGTCAT | 0 |
DNA sequence
AGTTATCGCTCTTTCATCACTCTAGGAGGAGGATAATGAGTTCAACGCCGTCAAAGAGTTTTGATGCTCATGACTCCTCCACGTCCAGCCGCCACCACCT
TGACCTTCATTGATGAGTACTGTCAGTGCTACCGTCCTTTATTTACAGATGTCAGAAGCTATGAAGCGTTCAAATACTTGCATCTGGGAATGATGTCTGA
CATTAAACACAAGAGTCTTCCTGCCATTGCTCGTATCTGTGGTCTCGCCAATGAACAAGGTCTCCTCCATTTTTTGACAGAATCTCCTTGGCGTCCCTCA
GCCCTTGAACAAGCAAGACTTAACCTGATCTTGCAAGTACTTTCGGGACGACCGCTCACCTTGATCATTGATGAGACAGAAGACCGCAAAAAGGGCAAAC
AGACGGATTACGTTCAACGCCAGTATCTCGGTAATTTAGGCAAAGTTGACAATGGCATCGTTGCTGTCACGGCTTATGGAGTAGTGGAGCATATGACCTT
GCCGTTAATGTTTCGAGTGTACAAACCCAAGAGTCGCCTCCAGTCAGGAGATGTCTATCACAGCAAACCTGAAATTGCGGTTTCGATGATTGATGAGCTC
CTTGCTCATGGTTGTCAATTTGATTTGGTACTTGCGGATAGTTTGTATGGCGAAAGTGGTAGTACCTTCGTCTCCCACTTGCAAGCATTGCAGCTTCCTT
ATGTCGTTGCCATTCGCAGCAATCATGGATTGTGGTTGCCGAAAGAACAACGGGTTCGATGTAATCGCTGGCGAGCATTTGAACATGTTTTTTCAGACGG
TTCCTGTGAAACTCGCTATATCCGAGAAGTCATTTATGGTCAGCGTCTTGCCCAACAATTTTGGGATATTACCACTGATCCACAAAACTTACCTAAAGCC
TCTACCTGGTATGTAATGAGCGAAATAGAAGGCGTCAAATATCACCAAATAGGCAATTTCTATGGTCTGAGAAACTGGGTCGAATATGGTCTCAAGCAAA
GCAAGAATGAGTTAGGCTGGGCCGATTTTCGGGTCACGGATTATGACCAGATTGAACGATGGTGGCAGGTCGTCATGAGTGCGTACCTGATGGTGAGTCT
TCACTCTGATAGGTTTGAACTACCGACAGGATTATCCATGAAACAGCAAGTCCCTCCTGTGATAGAGACGTTTTCGCAGCACCGATATTGGCAGACAGGG
AAAGGGTGGAAACATCTGCTCAACAACTTGAGGTTAGTGATAATACAATCGTTGATTCTATTCGATCAGATTCAACCTTGGTTGGAGGTTTTTCCCATTC
CCAGATTATCACTGGGATTTCCACAATTGATTGTGATGATGAATCAACTCCATGGAGCCATACCCAGGGCTGCGCCTGGGGTGAAAACGCCGTTTTTATC
TGCCTAGAGTGATGAAAGAGCGATAACT
TGACCTTCATTGATGAGTACTGTCAGTGCTACCGTCCTTTATTTACAGATGTCAGAAGCTATGAAGCGTTCAAATACTTGCATCTGGGAATGATGTCTGA
CATTAAACACAAGAGTCTTCCTGCCATTGCTCGTATCTGTGGTCTCGCCAATGAACAAGGTCTCCTCCATTTTTTGACAGAATCTCCTTGGCGTCCCTCA
GCCCTTGAACAAGCAAGACTTAACCTGATCTTGCAAGTACTTTCGGGACGACCGCTCACCTTGATCATTGATGAGACAGAAGACCGCAAAAAGGGCAAAC
AGACGGATTACGTTCAACGCCAGTATCTCGGTAATTTAGGCAAAGTTGACAATGGCATCGTTGCTGTCACGGCTTATGGAGTAGTGGAGCATATGACCTT
GCCGTTAATGTTTCGAGTGTACAAACCCAAGAGTCGCCTCCAGTCAGGAGATGTCTATCACAGCAAACCTGAAATTGCGGTTTCGATGATTGATGAGCTC
CTTGCTCATGGTTGTCAATTTGATTTGGTACTTGCGGATAGTTTGTATGGCGAAAGTGGTAGTACCTTCGTCTCCCACTTGCAAGCATTGCAGCTTCCTT
ATGTCGTTGCCATTCGCAGCAATCATGGATTGTGGTTGCCGAAAGAACAACGGGTTCGATGTAATCGCTGGCGAGCATTTGAACATGTTTTTTCAGACGG
TTCCTGTGAAACTCGCTATATCCGAGAAGTCATTTATGGTCAGCGTCTTGCCCAACAATTTTGGGATATTACCACTGATCCACAAAACTTACCTAAAGCC
TCTACCTGGTATGTAATGAGCGAAATAGAAGGCGTCAAATATCACCAAATAGGCAATTTCTATGGTCTGAGAAACTGGGTCGAATATGGTCTCAAGCAAA
GCAAGAATGAGTTAGGCTGGGCCGATTTTCGGGTCACGGATTATGACCAGATTGAACGATGGTGGCAGGTCGTCATGAGTGCGTACCTGATGGTGAGTCT
TCACTCTGATAGGTTTGAACTACCGACAGGATTATCCATGAAACAGCAAGTCCCTCCTGTGATAGAGACGTTTTCGCAGCACCGATATTGGCAGACAGGG
AAAGGGTGGAAACATCTGCTCAACAACTTGAGGTTAGTGATAATACAATCGTTGATTCTATTCGATCAGATTCAACCTTGGTTGGAGGTTTTTCCCATTC
CCAGATTATCACTGGGATTTCCACAATTGATTGTGATGATGAATCAACTCCATGGAGCCATACCCAGGGCTGCGCCTGGGGTGAAAACGCCGTTTTTATC
TGCCTAGAGTGATGAAAGAGCGATAACT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1344 bp | 447 aa | 64 | 1407 | + | No |
Chemistry : DDE
ORF sequence :
MLMTPPRPAATTLTFIDEYCQCYRPLFTDVRSYEAFKYLHLGMMSDIKHKSLPAIARICGLANEQGLLHFLTESPWRPSALEQARLNLILQVLSGRPLTL
IIDETEDRKKGKQTDYVQRQYLGNLGKVDNGIVAVTAYGVVEHMTLPLMFRVYKPKSRLQSGDVYHSKPEIAVSMIDELLAHGCQFDLVLADSLYGESGS
TFVSHLQALQLPYVVAIRSNHGLWLPKEQRVRCNRWRAFEHVFSDGSCETRYIREVIYGQRLAQQFWDITTDPQNLPKASTWYVMSEIEGVKYHQIGNFY
GLRNWVEYGLKQSKNELGWADFRVTDYDQIERWWQVVMSAYLMVSLHSDRFELPTGLSMKQQVPPVIETFSQHRYWQTGKGWKHLLNNLRLVIIQSLILF
DQIQPWLEVFPIPRLSLGFPQLIVMMNQLHGAIPRAAPGVKTPFLSA
IIDETEDRKKGKQTDYVQRQYLGNLGKVDNGIVAVTAYGVVEHMTLPLMFRVYKPKSRLQSGDVYHSKPEIAVSMIDELLAHGCQFDLVLADSLYGESGS
TFVSHLQALQLPYVVAIRSNHGLWLPKEQRVRCNRWRAFEHVFSDGSCETRYIREVIYGQRLAQQFWDITTDPQNLPKASTWYVMSEIEGVKYHQIGNFY
GLRNWVEYGLKQSKNELGWADFRVTDYDQIERWWQVVMSAYLMVSLHSDRFELPTGLSMKQQVPPVIETFSQHRYWQTGKGWKHLLNNLRLVIIQSLILF
DQIQPWLEVFPIPRLSLGFPQLIVMMNQLHGAIPRAAPGVKTPFLSA
Blast result :
Comments
ISAcma24 is 71% aa similar to ISNpu5.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)
2] ISfinder annotation (2009)