ISPlan1

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Planococcus antarcticus
Planococcus antarcticus DSM 14505
DNA section
IS Length : 1352 bp

Ends


IR Length : 15/17

IRL : CTCTAAATGAGCAAATTCAGAACCATTTTTTACCAGTTAAAACAACAAAA
IRR : CTCTAAATGAGCATTTTTGCAGTTAAAAATTCCCAACGAATGTGAACAGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTGTTTATCTATATAAGTTGAACTAG7

DNA sequence

CTCTAAATGAGCAAATTCAGAACCATTTTTTACCAGTTAAAACAACAAAAAAAGACAAACGCGCTAATTTGGGATAGAATCAAGGTGCCTAAACCAATAT
CTATCCAAAGGAGCGTCGTTTGCCCATGAACAGATTATCATATCAACAGGAAATCGACAATGGATTCGCCGACTGGAACCTTGGTTTTTACTTCTCGAAA
CCGGTTCTGAAGCACCTGGTCCATTTTACCGATGGCATCTTAAGTATTGGATTCACCGGCAAGTTGACGGAAATCCACACCGCTAGCCGAAATGAGAATC
ACCGGACCCTTTTGGGGCATTTCTTGAAACAGGGCGTTTGGAATGAACAATTCCTCCTCGGACAGACCCAGCAGCACATTTTGCGAAAGGTAGCGAAAGA
CGAACCCCTTTTCGTCCTGATAGACGACACCATCTGTAAAAAGACAAAGCCTTCGTCACGGGCCAAGTCTCCAATAGATGCCTGCGGGTTTCATTATTCG
CATGCAGACGGAAAAAGTGTTTGGGGCCACCAGGGGGTGGAGATGATGGTGAAGTCGGCTGGCCGGGCGTTTCCGTTTGACTTCCGGCTGTATACCAAAG
AGACAGGGGAAAGCAAAATTCAATTGGCAGATGACATGATCCGTCAGCTTCCCACTTTGAAGCAGACTGCCTATGTGCTGTTTGATACTTGGTATACGGC
CAGTTCCCTCATCAAAGCTGCCCGGTCAAAAAATCTCCATGTCATCAGCGCACTAAAAAGCAATCGGATCATCTATCCCAATGGGATCCGTATCCAGGTG
AAGGAATTCGCCGCTTCCATTCAGGAGGTGGACACCGACTTGGTGACAGTCGGAAAAGCCACCTACCGGGTGTACCGCTACGTAGGCCCGCTGAGCGATG
GGACGACAGGCACTGTCCTCTTGTCCTGGACCCCGGATCAGCCGATGGATCCCAAGCTGATGCGCTGTTTTTTCAGCACGGATGCAACATTAACCAGCGA
ACAGATTCTCCGTTATTATGGCGAACGGTGGAGCATCGAGACCTACTTTCAGACCGTCAAAAAACAGCTTGGGTTCGCGGGCTATCAAATCCGAAACGAA
CGGGCGATCCGCCGCTACTGGACAATCGTCCAGTTCACCTACGTCTTCGCGATGTATTTGCGGGACGAGGTTTTCCAGATTGCCATCCGGCAACTACGGC
GCCAAAAGATGGGCAGTCTCATCGAGTTTGTCTATGAGGAATGCCAGAACGGAGTGGCGCTTGACCACATCAAAAATGAGCTACAGCCAGCGTAGGCACC
CGTCTGTTCACATTCGTTGGGAATTTTTAACTGCAAAAATGCTCATTTAGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1261295+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNRLSYQQEIDNGFADWNLGFYFSKPVLKHLVHFTDGILSIGFTGKLTEIHTASRNENHRTLLGHFLKQGVWNEQFLLGQTQQHILRKVAKDEPLFVLID
DTICKKTKPSSRAKSPIDACGFHYSHADGKSVWGHQGVEMMVKSAGRAFPFDFRLYTKETGESKIQLADDMIRQLPTLKQTAYVLFDTWYTASSLIKAAR
SKNLHVISALKSNRIIYPNGIRIQVKEFAASIQEVDTDLVTVGKATYRVYRYVGPLSDGTTGTVLLSWTPDQPMDPKLMRCFFSTDATLTSEQILRYYGE
RWSIETYFQTVKKQLGFAGYQIRNERAIRRYWTIVQFTYVFAMYLRDEVFQIAIRQLRRQKMGSLIEFVYEECQNGVALDHIKNELQPA

 

Blast result :
Comments
ISPlan1 is 51% aa similar to ISCth16.
Genome in progress : Accession number : NZ_AJYB01000086.
References
1] ISfinder submission (2012)
2] Sanchez,B. and Margolles,A. (2012) Direct submission GenBank.