ISPlan1
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Planococcus antarcticus | Planococcus antarcticus DSM 14505 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 15/17
IRL : CTCTAAATGAGCAAATTCAGAACCATTTTTTACCAGTTAAAACAACAAAA
IRR : CTCTAAATGAGCATTTTTGCAGTTAAAAATTCCCAACGAATGTGAACAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTGTTTATC | TATATAA | GTTGAACTAG | 7 |
DNA sequence
CTCTAAATGAGCAAATTCAGAACCATTTTTTACCAGTTAAAACAACAAAAAAAGACAAACGCGCTAATTTGGGATAGAATCAAGGTGCCTAAACCAATAT
CTATCCAAAGGAGCGTCGTTTGCCCATGAACAGATTATCATATCAACAGGAAATCGACAATGGATTCGCCGACTGGAACCTTGGTTTTTACTTCTCGAAA
CCGGTTCTGAAGCACCTGGTCCATTTTACCGATGGCATCTTAAGTATTGGATTCACCGGCAAGTTGACGGAAATCCACACCGCTAGCCGAAATGAGAATC
ACCGGACCCTTTTGGGGCATTTCTTGAAACAGGGCGTTTGGAATGAACAATTCCTCCTCGGACAGACCCAGCAGCACATTTTGCGAAAGGTAGCGAAAGA
CGAACCCCTTTTCGTCCTGATAGACGACACCATCTGTAAAAAGACAAAGCCTTCGTCACGGGCCAAGTCTCCAATAGATGCCTGCGGGTTTCATTATTCG
CATGCAGACGGAAAAAGTGTTTGGGGCCACCAGGGGGTGGAGATGATGGTGAAGTCGGCTGGCCGGGCGTTTCCGTTTGACTTCCGGCTGTATACCAAAG
AGACAGGGGAAAGCAAAATTCAATTGGCAGATGACATGATCCGTCAGCTTCCCACTTTGAAGCAGACTGCCTATGTGCTGTTTGATACTTGGTATACGGC
CAGTTCCCTCATCAAAGCTGCCCGGTCAAAAAATCTCCATGTCATCAGCGCACTAAAAAGCAATCGGATCATCTATCCCAATGGGATCCGTATCCAGGTG
AAGGAATTCGCCGCTTCCATTCAGGAGGTGGACACCGACTTGGTGACAGTCGGAAAAGCCACCTACCGGGTGTACCGCTACGTAGGCCCGCTGAGCGATG
GGACGACAGGCACTGTCCTCTTGTCCTGGACCCCGGATCAGCCGATGGATCCCAAGCTGATGCGCTGTTTTTTCAGCACGGATGCAACATTAACCAGCGA
ACAGATTCTCCGTTATTATGGCGAACGGTGGAGCATCGAGACCTACTTTCAGACCGTCAAAAAACAGCTTGGGTTCGCGGGCTATCAAATCCGAAACGAA
CGGGCGATCCGCCGCTACTGGACAATCGTCCAGTTCACCTACGTCTTCGCGATGTATTTGCGGGACGAGGTTTTCCAGATTGCCATCCGGCAACTACGGC
GCCAAAAGATGGGCAGTCTCATCGAGTTTGTCTATGAGGAATGCCAGAACGGAGTGGCGCTTGACCACATCAAAAATGAGCTACAGCCAGCGTAGGCACC
CGTCTGTTCACATTCGTTGGGAATTTTTAACTGCAAAAATGCTCATTTAGAG
CTATCCAAAGGAGCGTCGTTTGCCCATGAACAGATTATCATATCAACAGGAAATCGACAATGGATTCGCCGACTGGAACCTTGGTTTTTACTTCTCGAAA
CCGGTTCTGAAGCACCTGGTCCATTTTACCGATGGCATCTTAAGTATTGGATTCACCGGCAAGTTGACGGAAATCCACACCGCTAGCCGAAATGAGAATC
ACCGGACCCTTTTGGGGCATTTCTTGAAACAGGGCGTTTGGAATGAACAATTCCTCCTCGGACAGACCCAGCAGCACATTTTGCGAAAGGTAGCGAAAGA
CGAACCCCTTTTCGTCCTGATAGACGACACCATCTGTAAAAAGACAAAGCCTTCGTCACGGGCCAAGTCTCCAATAGATGCCTGCGGGTTTCATTATTCG
CATGCAGACGGAAAAAGTGTTTGGGGCCACCAGGGGGTGGAGATGATGGTGAAGTCGGCTGGCCGGGCGTTTCCGTTTGACTTCCGGCTGTATACCAAAG
AGACAGGGGAAAGCAAAATTCAATTGGCAGATGACATGATCCGTCAGCTTCCCACTTTGAAGCAGACTGCCTATGTGCTGTTTGATACTTGGTATACGGC
CAGTTCCCTCATCAAAGCTGCCCGGTCAAAAAATCTCCATGTCATCAGCGCACTAAAAAGCAATCGGATCATCTATCCCAATGGGATCCGTATCCAGGTG
AAGGAATTCGCCGCTTCCATTCAGGAGGTGGACACCGACTTGGTGACAGTCGGAAAAGCCACCTACCGGGTGTACCGCTACGTAGGCCCGCTGAGCGATG
GGACGACAGGCACTGTCCTCTTGTCCTGGACCCCGGATCAGCCGATGGATCCCAAGCTGATGCGCTGTTTTTTCAGCACGGATGCAACATTAACCAGCGA
ACAGATTCTCCGTTATTATGGCGAACGGTGGAGCATCGAGACCTACTTTCAGACCGTCAAAAAACAGCTTGGGTTCGCGGGCTATCAAATCCGAAACGAA
CGGGCGATCCGCCGCTACTGGACAATCGTCCAGTTCACCTACGTCTTCGCGATGTATTTGCGGGACGAGGTTTTCCAGATTGCCATCCGGCAACTACGGC
GCCAAAAGATGGGCAGTCTCATCGAGTTTGTCTATGAGGAATGCCAGAACGGAGTGGCGCTTGACCACATCAAAAATGAGCTACAGCCAGCGTAGGCACC
CGTCTGTTCACATTCGTTGGGAATTTTTAACTGCAAAAATGCTCATTTAGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 126 | 1295 | + | No |
Chemistry : DDE
ORF sequence :
MNRLSYQQEIDNGFADWNLGFYFSKPVLKHLVHFTDGILSIGFTGKLTEIHTASRNENHRTLLGHFLKQGVWNEQFLLGQTQQHILRKVAKDEPLFVLID
DTICKKTKPSSRAKSPIDACGFHYSHADGKSVWGHQGVEMMVKSAGRAFPFDFRLYTKETGESKIQLADDMIRQLPTLKQTAYVLFDTWYTASSLIKAAR
SKNLHVISALKSNRIIYPNGIRIQVKEFAASIQEVDTDLVTVGKATYRVYRYVGPLSDGTTGTVLLSWTPDQPMDPKLMRCFFSTDATLTSEQILRYYGE
RWSIETYFQTVKKQLGFAGYQIRNERAIRRYWTIVQFTYVFAMYLRDEVFQIAIRQLRRQKMGSLIEFVYEECQNGVALDHIKNELQPA
DTICKKTKPSSRAKSPIDACGFHYSHADGKSVWGHQGVEMMVKSAGRAFPFDFRLYTKETGESKIQLADDMIRQLPTLKQTAYVLFDTWYTASSLIKAAR
SKNLHVISALKSNRIIYPNGIRIQVKEFAASIQEVDTDLVTVGKATYRVYRYVGPLSDGTTGTVLLSWTPDQPMDPKLMRCFFSTDATLTSEQILRYYGE
RWSIETYFQTVKKQLGFAGYQIRNERAIRRYWTIVQFTYVFAMYLRDEVFQIAIRQLRRQKMGSLIEFVYEECQNGVALDHIKNELQPA
Blast result :
Comments
ISPlan1 is 51% aa similar to ISCth16.
Genome in progress : Accession number : NZ_AJYB01000086.
Genome in progress : Accession number : NZ_AJYB01000086.
References
1] ISfinder submission (2012)
2] Sanchez,B. and Margolles,A. (2012) Direct submission GenBank.
2] Sanchez,B. and Margolles,A. (2012) Direct submission GenBank.