ISThsp12

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 2004 bp

Ends


IR Length : 18/19

IRL : GGCCACCCAAGTTCGACACCGCTCCGCCGATTTTCCCCGCTCCAAGGCGC
IRR : GGCCACCCGAGTTCGACACTTCAAGAGCGTAAGTCATTGATTTGACGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCAACCGGCGCCAGGGTCGGTAGGGTGGCGCAGTTTGGCTGGGG0

DNA sequence

GGCCACCCAAGTTCGACACCGCTCCGCCGATTTTCCCCGCTCCAAGGCGCAAGAAGCTCATTGTTGACAGGGGTTTGGCACATCGAGAGCGCGTGGTCCA
GACGACATTTGTAGTGGCACGTTTAATGAGTGATGTAGTTCCTTGTTTCTCGCTGTTGCGCTACACTTGCGCCATGTTTCTCAAGCTCACGAAGTCTGGC
GGCCGGCATTACGCGCAGCTCGTCGCGTCCTTCCGCAACGAGGCCGGCCAGCCGCGCCAGCGCACCATCTGCACGCTGGGCCGGCTGGAGCCCGGCGGTG
ATGTCGACAAGCTGATCGCCTCGTTGCAGCGGGCGCGGGGCCTGGACGCCGCCCCCGCCGGCAACCCGCTCGACGGCCTGCGTTTTGAGGGCAGCCGCTG
TGCCGGCGATGTGTGGGCGCTGTGGCAACTGTGGCGCACCCTGGGCTTCGATGGCCTGGCCACCGCCTGGCGTGGCTCGCGGGTCGAGGTCGATGTGCTG
GGGTGCCTGCGCGCCATGGTCTTCAACCGCCTGTGCGACACCGGCAGCAAGCTCGGCGTGCTGCGCTGGCTGGAGACGGTGGCGTTGCCGCTGGACTTCG
GGTTCGCCGACGGGCCGCCGCAGCACCAGCACCTGCTGCGCGCCATGGACGTCATCGACGAACACAGCGATGCGCTTGGCGCACGACTGGCCACGCTCAT
GCGCCCCCTGATCGACGAAGACTTGTCAGTGGTGTTCTACGACCTCACCACCGTCGAGGTCGCCGGCGAGGCGGTGGTGGCTGACGACGTGCGCGCCTAC
GGGATGAGCAAGTCAGGGATGGTGGCGCGGCAGTTCATGCTGTCGCTGGTGCAGACCGCTGAAGGCCTGCCGATCGCCCATGAGGTGCACCCGGGCAACA
TCGCCGAGGCCAAGACACTGCTGCCGATGATCAAGTCGCTGCTGGCGCGCTACCCGCTCAAGCGTGTGGTGCTGGTGGCCGACCGTGGGCTGCTGAGCGT
GAACAACCTCGACGAGTTGGCCACGCTGCAGGCCACGCTGGCCGGCGAGGGGCGCGCCGTGAGCCTGGAGTACGTGCTGGCGGTGCCGACAGCACGCTAT
GGGGACTTCGCCGAGGCGCTGCGCACCTCGGCCAGCAGCCAGCCTGCCGACCAGCCGTGGGTGGCCGAGAGCACTTGGCAGTCATCCAGCAAGTCGTCGT
CCAAGTCGACGTCACCATCAGCGCCCATCCAGCGCCGACTGGTCATCGCCCACGACCCCGAGGTGGCCCGGCGGCGCACCCAGGCGCGCAACAAGGCGAT
CACGGAGCTGCTGGCCCTGGGTGAGCAGTGGGGCGGCAAGCTCGATGCGCAGGACGCTGGCGCAAGCCGCCGCGGCCGCCCGCTGTCGGACTCGGGTGCG
AAGGCGCGCTTCTATCACGCGGCCCAGGACGCGAGCCTGGCCCACCTGATCAAGGTCGATCTGCAGGCCGAGGCCTTCAGCTTCCACGTCGACGAGGACA
AGCAGCGCGACCTTGAACTGCTCGACGGCAAGCTGCTGCTGGTGACCAACACCGACGCGCCAGCGGTCGAGGTGGTGCAGCGCTACAAGAGCCTGGCCGA
CATCGAGCGAGGCTTCCGGGTGCTGAAGTCCGACATCGAGATCGGTCCGGTGTACCACCGGCTGCCAAAGCGCATTCGCGCGCACGCGCTGGTGTGCTTC
ATGGCGCTGATCCTGTACCGGGTGATGCGCATGCGGCTAAAGGCCAACGACCACGATGAGTCACCGATCCGCCTGCTGCAGCAACTGCAGCGCATCCATC
AGCAGACCGTGCGCACCGCCGACGGGCAAGCTCTGCACGGGCTGACCGAAATGACGCCGACGCAAAAGTCGCTGTTCTCCGTTCTCCAACTGCCAATGCC
GACGCCTGCCGCACTCTCCAAGCCCGTTTTGTAGTCTGCGCCTTTGACCATCGTCCTCGTCAAATCAATGACTTACGCTCTTGAAGTGTCGAACTCGGGT
GGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1761 bp586 aa1741934+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFLKLTKSGGRHYAQLVASFRNEAGQPRQRTICTLGRLEPGGDVDKLIASLQRARGLDAAPAGNPLDGLRFEGSRCAGDVWALWQLWRTLGFDGLATAWR
GSRVEVDVLGCLRAMVFNRLCDTGSKLGVLRWLETVALPLDFGFADGPPQHQHLLRAMDVIDEHSDALGARLATLMRPLIDEDLSVVFYDLTTVEVAGEA
VVADDVRAYGMSKSGMVARQFMLSLVQTAEGLPIAHEVHPGNIAEAKTLLPMIKSLLARYPLKRVVLVADRGLLSVNNLDELATLQATLAGEGRAVSLEY
VLAVPTARYGDFAEALRTSASSQPADQPWVAESTWQSSSKSSSKSTSPSAPIQRRLVIAHDPEVARRRTQARNKAITELLALGEQWGGKLDAQDAGASRR
GRPLSDSGAKARFYHAAQDASLAHLIKVDLQAEAFSFHVDEDKQRDLELLDGKLLLVTNTDAPAVEVVQRYKSLADIERGFRVLKSDIEIGPVYHRLPKR
IRAHALVCFMALILYRVMRMRLKANDHDESPIRLLQQLQRIHQQTVRTADGQALHGLTEMTPTQKSLFSVLQLPMPTPAALSKPVL

 

Blast result :
Comments
ISThsp12 is 65% aa similar to ISAzo14.
References
1] ISfinder annotation (2009)